From unknown Sat Jun 21 12:18:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#71146] [PATCH] gnu: kallisto: Update to 0.50.1 Resent-From: guix@mawumag.com Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 23 May 2024 13:38:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 71146 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 71146@debbugs.gnu.org Cc: Ricardo Wurmus X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.171647144311134 (code B ref -1); Thu, 23 May 2024 13:38:02 +0000 Received: (at submit) by debbugs.gnu.org; 23 May 2024 13:37:23 +0000 Received: from localhost ([127.0.0.1]:59091 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sA8dH-0002tW-3X for submit@debbugs.gnu.org; Thu, 23 May 2024 09:37:23 -0400 Received: from lists.gnu.org ([209.51.188.17]:47672) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sA59J-0000lK-Ii for submit@debbugs.gnu.org; Thu, 23 May 2024 05:54:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sA59C-0001Xs-UZ for guix-patches@gnu.org; Thu, 23 May 2024 05:54:06 -0400 Received: from mail-200165.simplelogin.co ([176.119.200.165]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sA59A-0002Zy-DR for guix-patches@gnu.org; Thu, 23 May 2024 05:54:06 -0400 ARC-Seal: i=1; a=rsa-sha256; d=simplelogin.co; s=arc-20230626; t=1716458041; cv=none; b=Qp1WSHP4XM4FQNZUdGo/91Jl08AgLxR3dSzTLK5zIR/h1tvNBPOWUf1njawFf0kVrJgPvuYct2aN8oGYHlHbaN/oMKj+C7S59p7j6Jjpp1QYAHsggCVopU0nIr/5bFzduTMu2icciOIlO89SJhu/xhHsffZs7JnTWUnGSl2LAK2XGO9yPL2EzY9N6tc9fKhLu3i/rKKKNgPogPxUJVBfl3NdIUWdxkXTSiVXtjm1GCM30mg6BNoE1uRnrDKBr7KpsT3XAZPZdXAqxEXDAe3eIQfjigYlgCpYYgrPf+wRqYXdO4uz3np1vYgld14eYEgRyyQTT0N+9lRUeQEnBQsNvA== ARC-Message-Signature: i=1; a=rsa-sha256; d=simplelogin.co; s=arc-20230626; t=1716458041; c=relaxed/simple; bh=O6+FCe/Bm2IZjEWEga95sDJBDmp6zDCTNawzcuCmUuQ=; h=Date:Subject:From:To:Cc; b=LI7Ckr9MeETsutCk3NdLpxdivPA0wBXGN5u7HfRI6Y4+yDmVN3tY0lONC/gtoGTVxtOaJSZ2+U7Z0P0V6QGb4XnEc69WvkIQh1ivlBGMyADpD1d6eACw2G0y+swLlvQmip8O63ze/Im7HE/ztRSadguWF6n0D18sWWpT4xOAx7slDuvF3dF4x+tzi4AZIOUvXIzAXe/gujSS48+1iPq1gyEWOk7GO7kuTIUH9jiCzE1sjpHsWr58Nci4rOLthbJKk6iXkeygL1Ok0uWQXyK7T+WNXYQlXS47paWzhu64wl8dFFtXBcOBvu0SkWnMsv45ov6MKByrV3ZK0IcKrLeiXw== ARC-Authentication-Results: i=1; mail.protonmail.ch DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=mawumag.com; s=dkim; t=1716458041; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=O6+FCe/Bm2IZjEWEga95sDJBDmp6zDCTNawzcuCmUuQ=; b=KZtfuo39CNVfbs2y5lepJLI8TrX5zMlaTd0QJT3tkW2W0MCOaWLrJ8Hhn/XUoJHdqOwLkP E39o/PYrPlfEB3pJDaeSyr4iAC9ovSPOu7BUhx25nzv/R0cOJqg71Xeu1g50X42+yqe21F nxsKltcSv3qX8GLsut2WywJAHkeqOs4= Date: Thu, 23 May 2024 09:53:54 +0000 MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs" Content-Transfer-Encoding: 7bit From: guix@mawumag.com Message-ID: <171645804083.6.7508412953776945309.337355746@mawumag.com> X-SimpleLogin-Type: Reply X-SimpleLogin-EmailLog-ID: 337355747 X-SimpleLogin-Want-Signing: yes Received-SPF: pass client-ip=176.119.200.165; envelope-from=sl.lmysyibtgm3tgnjvg42dolbagezdknzxge2f2.a6nspo4xe2kk2@mawumag.com; helo=mail-200165.simplelogin.co X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Mailman-Approved-At: Thu, 23 May 2024 09:37:21 -0400 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) This is a multi-part message in MIME format. --b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Updated kallisto to 0.50.1, it now supports more single-cell technologies (= e.g. SPLiT-seq). I had to modify the 'do-not-use-bundled-htslib snippet to make one regex mo= re selective---in this new version it the previous regex was mistakenly mod= ifying parts of CMakeLists.txt other than the intended one. --b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs Content-Type: text/x-patch; name=0001-gnu-kallisto-Update-to-0.50.1.patch Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename=0001-gnu-kallisto-Update-to-0.50.1.patch RnJvbSA5YmVjMWM1YmYxNGI2NDRlZjcxNDdiMWJjNjZhY2FlYTZhOTAzODMwIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpNZXNzYWdlLUlEOiA8OWJlYzFjNWJmMTRiNjQ0ZWY3MTQ3YjFiYzY2YWNh ZWE2YTkwMzgzMC4xNzE2NDU3MjQxLmdpdC5ndWl4QG1hd3VtYWcuY29tPgpGcm9tOiBNYXJjbyBC YWdnaW8gPGd1aXhAbWF3dW1hZy5jb20+CkRhdGU6IFRodSwgMjMgTWF5IDIwMjQgMDg6NTI6MDYg KzAyMDAKU3ViamVjdDogW1BBVENIXSBnbnU6IGthbGxpc3RvOiBVcGRhdGUgdG8gMC41MC4xCgpD aGFuZ2UtSWQ6IEkxYjA0OGJlMzI4ZjZkMWQ1MDM0ZGZlMjk2ODhhNDRmMmFmMGIwMjZhCi0tLQog Z251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSB8IDE0ICsrKysrKystLS0tLS0tCiAxIGZp bGUgY2hhbmdlZCwgNyBpbnNlcnRpb25zKCspLCA3IGRlbGV0aW9ucygtKQoKZGlmZiAtLWdpdCBh L2dudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20gYi9nbnUvcGFja2FnZXMvYmlvaW5mb3Jt YXRpY3Muc2NtCmluZGV4IGI3ZThlNTRkZTIuLjhkZWUzMDAzMjAgMTAwNjQ0Ci0tLSBhL2dudS9w YWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KKysrIGIvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0 aWNzLnNjbQpAQCAtMTQ4MjAsNyArMTQ4MjAsNyBAQCAoZGVmaW5lLXB1YmxpYyBzZWdlbWVobAog KGRlZmluZS1wdWJsaWMga2FsbGlzdG8KICAgKHBhY2thZ2UKICAgICAobmFtZSAia2FsbGlzdG8i KQotICAgICh2ZXJzaW9uICIwLjQ4LjAiKQorICAgICh2ZXJzaW9uICIwLjUwLjEiKQogICAgIChz b3VyY2UgKG9yaWdpbgogICAgICAgICAgICAgICAobWV0aG9kIGdpdC1mZXRjaCkKICAgICAgICAg ICAgICAgKHVyaSAoZ2l0LXJlZmVyZW5jZQpAQCAtMTQ4MjksNyArMTQ4MjksNyBAQCAoZGVmaW5l LXB1YmxpYyBrYWxsaXN0bwogICAgICAgICAgICAgICAoZmlsZS1uYW1lIChnaXQtZmlsZS1uYW1l IG5hbWUgdmVyc2lvbikpCiAgICAgICAgICAgICAgIChzaGEyNTYKICAgICAgICAgICAgICAgIChi YXNlMzIKLSAgICAgICAgICAgICAgICAiMHd4MW5kbWhuZHNkNjA5NTJwaWFhOTI1bGs4YmpyNTlk MnlyMW0yaGNzcWNiNmNkandwbiIpKQorICAgICAgICAgICAgICAgICIwemZzNzltdjc1NTk5Y2Y5 ZDdkM2M1YTNzOGlkZ3o5cXZsNHFmemh2aGJkODd5M2R2N3AwIikpCiAgICAgICAgICAgICAgICht b2R1bGVzICcoKGd1aXggYnVpbGQgdXRpbHMpKSkKICAgICAgICAgICAgICAgKHNuaXBwZXQKICAg ICAgICAgICAgICAgICcoZGVsZXRlLWZpbGUtcmVjdXJzaXZlbHkgImV4dC9odHNsaWIvIikpKSkK QEAgLTE0ODQxLDE2ICsxNDg0MSwxNiBAQCAoZGVmaW5lLXB1YmxpYyBrYWxsaXN0bwogICAgICAg ICAgKGFkZC1hZnRlciAndW5wYWNrICdkby1ub3QtdXNlLWJ1bmRsZWQtaHRzbGliCiAgICAgICAg ICAgIChsYW1iZGEgXwogICAgICAgICAgICAgIChzdWJzdGl0dXRlKiAiQ01ha2VMaXN0cy50eHQi Ci0gICAgICAgICAgICAgICAoKCJeRXh0ZXJuYWxQcm9qZWN0X0FkZCIgbSkKKyAgICAgICAgICAg ICAgICgoIl5FeHRlcm5hbFByb2plY3RfQWRkXFwoaHRzbGliW15cXCldKlxcKSIgbSkKICAgICAg ICAgICAgICAgICAoc3RyaW5nLWFwcGVuZCAiaWYgKE5FVkVSKVxuIiBtKSkKLSAgICAgICAgICAg ICAgICgoIl5cXCkiKQotICAgICAgICAgICAgICAgIChzdHJpbmctYXBwZW5kICIpXG5lbmRpZihO RVZFUikiKSkKICAgICAgICAgICAgICAgICgoImluY2x1ZGVfZGlyZWN0b3JpZXNcXChcXCRcXHto dHNsaWJfUFJFRklYLioiIG0pCiAgICAgICAgICAgICAgICAgKHN0cmluZy1hcHBlbmQgIiMgIiBt KSkpCiAgICAgICAgICAgICAgKHN1YnN0aXR1dGUqICJzcmMvQ01ha2VMaXN0cy50eHQiCiAgICAg ICAgICAgICAgICAoKCJ0YXJnZXRfbGlua19saWJyYXJpZXNcXChrYWxsaXN0byBrYWxsaXN0b19j b3JlIHB0aHJlYWQgXAotXFwkXFx7Q01BS0VfQ1VSUkVOVF9TT1VSQ0VfRElSXFx9Ly4uL2V4dC9o dHNsaWIvbGliaHRzLmFcXCkiKQotICAgICAgICAgICAgICAgICJ0YXJnZXRfbGlua19saWJyYXJp ZXMoa2FsbGlzdG8ga2FsbGlzdG9fY29yZSBwdGhyZWFkIGh0cykiKQorXFwkXFx7Q01BS0VfQ1VS UkVOVF9TT1VSQ0VfRElSXFx9Ly4uL2V4dC9odHNsaWIvbGliaHRzLmEgXAorXFwkXFx7aW5zdGFs bF9kaXJcXH0vYnVpbGQvc3JjL2xpYmJpZnJvc3QuYVxcKSIpCisgICAgICAgICAgICAgICAgInRh cmdldF9saW5rX2xpYnJhcmllcyhrYWxsaXN0byBrYWxsaXN0b19jb3JlIHB0aHJlYWQgaHRzIFwK KyR7aW5zdGFsbF9kaXJ9L2J1aWxkL3NyYy9saWJiaWZyb3N0LmEpIikKICAgICAgICAgICAgICAg ICgoImluY2x1ZGVfZGlyZWN0b3JpZXNcXChcXC5cXC4vZXh0L2h0c2xpYlxcKSIpICIiKSkpKSkp KQogICAgIChpbnB1dHMKICAgICAgKGxpc3QgaGRmNSBodHNsaWItMS45IHpsaWIpKQoKYmFzZS1j b21taXQ6IDM1OTdjNzM2NTg4YzQ1ZWZkZTNjMjJkNTMzZWE4Nzc0YzNmZGQyMzUKLS0gCjIuNDEu MAoK --b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs-- From unknown Sat Jun 21 12:18:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#71146] [PATCH] gnu: kallisto: Update to 0.50.1 Resent-From: Ricardo Wurmus Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 01 Jun 2024 19:14:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 71146 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: guix@mawumag.com Cc: 71146@debbugs.gnu.org Received: via spool by 71146-submit@debbugs.gnu.org id=B71146.171726921123792 (code B ref 71146); Sat, 01 Jun 2024 19:14:01 +0000 Received: (at 71146) by debbugs.gnu.org; 1 Jun 2024 19:13:31 +0000 Received: from localhost ([127.0.0.1]:57441 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sDUAV-0006Bf-0q for submit@debbugs.gnu.org; Sat, 01 Jun 2024 15:13:31 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21114) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sDUAT-0006BV-Kj for 71146@debbugs.gnu.org; Sat, 01 Jun 2024 15:13:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1717269196; cv=none; d=zohomail.com; s=zohoarc; b=EN3i8xBEl0n0/4hYShwEXPm3YmRhvyVUGzFW0y3N/07Cme8a0xozvTSUMwvRUKLdrNPkZg+DaOUT0/AdBMHccD83CREynj6ISx66Cle5CBhZC/hqLPIH6H4FytqZl2n/DfxYtaeBT6DLmygQCy+7r03BqPZtDPFiewJ/Rs3YTh4= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1717269196; h=Content-Type:Cc:Cc:Date:Date:From:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:Subject:To:To:Message-Id:Reply-To; bh=RNAAtcFqwrPJur+S6KWKAAWVZv9zoWXjeWgZpqrVwNc=; 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emacs 29.3 Date: Sat, 01 Jun 2024 21:13:10 +0200 Message-ID: <87le3ojx2x.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Ricardo Wurmus writes: >> I had to modify the 'do-not-use-bundled-htslib snippet to make one >> regex more selective---in this new version it the previous regex was >> mistakenly modifying parts of CMakeLists.txt other than the intended >> one. > > It looks like this might not be working as intended. I used: > > guix gc -R $(./pre-inst-env guix build kallisto) > > and it shows me that the newly built kallisto does not link with our > htslib. Perhaps it used the static library? Turns out it's not actually using htslib at all, because USE_BAM is not set. It uses a bundled copy of bifrost instead. If we want to build kallisto with bifrost only then we should remove htslib from the inputs, package bifrost (https://github.com/pmelsted/bifrost) and unbundle it from kallisto, linking with the shared library. Does this sound like a good plan or should we use htslib instead? -- Ricardo From unknown Sat Jun 21 12:18:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#71146] [PATCH] gnu: kallisto: Update to 0.50.1 Resent-From: Ricardo Wurmus Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Sat, 01 Jun 2024 19:14:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 71146 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: guix@mawumag.com Cc: 71146@debbugs.gnu.org Received: via spool by 71146-submit@debbugs.gnu.org id=B71146.171726922823829 (code B ref 71146); Sat, 01 Jun 2024 19:14:02 +0000 Received: (at 71146) by debbugs.gnu.org; 1 Jun 2024 19:13:48 +0000 Received: from localhost ([127.0.0.1]:57444 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sDUAm-0006CF-CW for submit@debbugs.gnu.org; Sat, 01 Jun 2024 15:13:48 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21116) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sDUAk-0006C5-Ou for 71146@debbugs.gnu.org; Sat, 01 Jun 2024 15:13:47 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1717269214; cv=none; d=zohomail.com; s=zohoarc; b=MEm8omm05hIyWRomsiNUajJ8dzGVl2jgiGrVJ5sIT6B3b1p050GeQ1x7aJISI/3u7eDfXHW1BV7ujLanZVPtBtcs2gwDt0FBhhKiKH9qsY4qScF2u9CeCAbMrt3APpJWcN+qNtjjXYbNqeYoclFculM9/eBGPVvLJUBtlm1mA2A= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1717269214; h=Content-Type:Cc:Cc:Date:Date:From:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:Subject:To:To:Message-Id:Reply-To; bh=OXHOi+esloCLiV2QLzl415vvbzp3/GcZBIWA5waZbLQ=; b=PluK9MeEFGG5bUhlYAmqmPvd7QD4UL5AJWaQM1WkBkbv1UdNBC6LnTxmRfZUieeu8bRXrUZDCc2LS1tXKcOCfbnS8E5PKjyH/WK5wIn/aOiR19r4blQK+Rd6FYIfooWRbaR3RD2Np/iC9gfG4pbhP7m/L8/pCWgcC4/8e3ENnEU= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1717269214; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Cc:Cc:Subject:Subject:In-Reply-To:References:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To; bh=OXHOi+esloCLiV2QLzl415vvbzp3/GcZBIWA5waZbLQ=; b=ALmyL7ab84IlclBv7Qjp99Qf/inwpwrFqIXOrvof3I/wzul4dnRpqfY1owXL5BXb pZlyxESz3SAvHFb0S2yM8ZKFfX7sPb93mz7qJiyKst7Yob26XGSExVvfKnQQ0ZodoMg aPa+TpOMgFDgATBiktPF7sxrKxMJoOHfkawjOl+w= Received: by mx.zohomail.com with SMTPS id 1717269213495975.8642122279466; Sat, 1 Jun 2024 12:13:33 -0700 (PDT) From: Ricardo Wurmus In-Reply-To: <171645804083.6.7508412953776945309.337355746@mawumag.com> (guix@mawumag.com's message of "Thu, 23 May 2024 09:53:54 +0000") References: <171645804083.6.7508412953776945309.337355746@mawumag.com> User-Agent: mu4e 1.12.4; emacs 29.3 Date: Sat, 01 Jun 2024 21:13:30 +0200 Message-ID: <87jzj8jx2d.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thank you for the patch! > I had to modify the 'do-not-use-bundled-htslib snippet to make one > regex more selective---in this new version it the previous regex was > mistakenly modifying parts of CMakeLists.txt other than the intended > one. It looks like this might not be working as intended. I used: guix gc -R $(./pre-inst-env guix build kallisto) and it shows me that the newly built kallisto does not link with our htslib. Perhaps it used the static library? -- Ricardo From unknown Sat Jun 21 12:18:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#71146] [PATCH] gnu: kallisto: Update to 0.50.1 Resent-From: guix@mawumag.com Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Tue, 04 Jun 2024 18:16:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 71146 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: Ricardo Wurmus Cc: 71146@debbugs.gnu.org Received: via spool by 71146-submit@debbugs.gnu.org id=B71146.171752493918615 (code B ref 71146); Tue, 04 Jun 2024 18:16:02 +0000 Received: (at 71146) by debbugs.gnu.org; 4 Jun 2024 18:15:39 +0000 Received: from localhost ([127.0.0.1]:43924 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sEYh8-0004q9-Bh for submit@debbugs.gnu.org; Tue, 04 Jun 2024 14:15:39 -0400 Received: from mail-200166.simplelogin.co ([176.119.200.166]:29475) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sEWVe-0006TI-Ra for 71146@debbugs.gnu.org; Tue, 04 Jun 2024 11:55:39 -0400 ARC-Seal: i=1; a=rsa-sha256; d=simplelogin.co; s=arc-20230626; t=1717515409; cv=none; b=WZkeoj/GkcGicTTMf5o8a6n2E0XlL9+L25c0Inj2kwMntOoNtAi1v/ie6stPgkkFayUJlcPzHkt9gJKXeWkhrGyO0dBFSx8r66NfJcgeUImbQy0MhuCwP7WzNZh5slcgiMTg41FCvLWGUsJM5BYwL6rrqcp7PTBvT6r/5nvJ41npqk8aIJVaE0gT0yw/Go/GMXXX8UNxpKCIawMJm8tnlGVsZPynNoQy4ugLjNtF2I++nWWFZD1Y2017o1JRaRN/lwhjz9JWl8dyvpltPj3Wmj3Ecia0+hTsiU2/Bl3H/F1w+uN2sLxgOSgqnS9IBml00WYUVb9fbiKzJjYSEUHcCw== ARC-Message-Signature: i=1; a=rsa-sha256; d=simplelogin.co; s=arc-20230626; t=1717515409; c=relaxed/simple; bh=scMmYqzbplaEkOxOG80DTssgBKiXnyf6iBKvsTj4Pgw=; h=Date:Subject:In-Reply-To:From:To:Cc:References; b=1Ci7z3g122m3smJihuclssC42+1sLCXInMmGMv/0gJ4jYgPzYoq1CxyjDP7JC7enhLidCfmnzm9id9C1fzBSD/AYZE24iWqSWnihbBOcjyJceW6CmDLF1ltr1foK0eBrkZXS2oaehRYG8nIa/zyVmJv8YuSl31yv2JT+t0tvzqGIcpDk3SiLoASvmHRdm9KZ83meXh6Tk14CLiPyFRdzvgcbfV8iG9ay1DhWuOZLAzPgoCmreiwdd3NXVaT8CE4ZSbsdLgEt5k3yKCFegq2CSFMj/6cUVMyd2Xef7lIBsQ1dJFUPrZklglRFQuTdq8oPqCeP5Wy+F2MO0e1os+BjEw== ARC-Authentication-Results: i=1; mail.protonmail.ch DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=mawumag.com; s=dkim; t=1717515409; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references; bh=scMmYqzbplaEkOxOG80DTssgBKiXnyf6iBKvsTj4Pgw=; b=Ckw3oErcCMS6IZVZK8EoBV4zPjkebysU5Od8r8Yyy99qlOtswpfoywlgOXGPSKHFdtcqz3 j56k/qga1e72oO6jezFY1Of1emDyoZzl7uX/tND1R76C+oqjC9gCvpyWanhH/gS6eRjwuu 1RF+vejOmCBy8xNVFC4wqRJdg4T92UQ= Date: Tue, 04 Jun 2024 15:36:41 +0000 In-Reply-To: <87le3ojx2x.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable From: guix@mawumag.com Message-ID: <171751540946.7.6431104630771377265.346935814@mawumag.com> References: <171645804083.6.7508412953776945309.337355746@mawumag.com> <87wmn8kcpa.fsf@elephly.net> <87le3ojx2x.fsf@elephly.net> X-SimpleLogin-Type: Reply X-SimpleLogin-EmailLog-ID: 346935814 X-SimpleLogin-Want-Signing: yes X-Spam-Score: -0.0 (/) X-Mailman-Approved-At: Tue, 04 Jun 2024 14:15:37 -0400 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) > Ricardo Wurmus rekado@elephly.net writes: >=20 > Turns out it's not actually using htslib at all, because USE_BAM is not > set. It uses a bundled copy of bifrost instead. If we want to build > kallisto with bifrost only then we should remove htslib from the inputs, > package bifrost (https://github.com/pmelsted/bifrost) and unbundle it > from kallisto, linking with the shared library. >=20 > Does this sound like a good plan or should we use htslib instead? My initial attempt was to unbundle bifrost from kallisto, but I had two con= cerns: - I was not able to determine the exact version of bifrost that was bundled= with kallisto (it is definitely not the latest one, as the relevant ext/bi= frost directory in kallisto is older). This is also a problem with htslib, I am sure whoever packaged kallisto 0.4= 8.0 was careful to choose the correct version, but I would not know how to = verify this. This has the potential to lead to mismatches (or even bugs) between the gui= x version and the official one compiled from their sources. - Some header files of bifrost appear to be included in kallisto source cod= e directly, but it was not clear to me how to include bifrost in guix in a = way that exports its libraries and headers. Especially for the first reason, I would actually propose to use the bundle= d htslib and bifrost for kallisto. Both are bundled as source code and are = compiled during the build process, so this should not pose a concern (bifro= st is released under BSD 2-Clause License, like kallisto, while htslib is r= eleased under expat). Please let me know what you think. Cheers, Marco From unknown Sat Jun 21 12:18:54 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: guix@mawumag.com Subject: bug#71146: closed ([PATCH] gnu: kallisto: Update to 0.50.1) Message-ID: References: <87msifgihh.fsf@elephly.net> <171645804083.6.7508412953776945309.337355746@mawumag.com> X-Gnu-PR-Message: they-closed 71146 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 71146@debbugs.gnu.org Date: Mon, 04 Nov 2024 14:52:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1730731922-21933-1" This is a multi-part message in MIME format... ------------=_1730731922-21933-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #71146: [PATCH] gnu: kallisto: Update to 0.50.1 which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 71146@debbugs.gnu.org. --=20 71146: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D71146 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1730731922-21933-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 71146-done) by debbugs.gnu.org; 4 Nov 2024 14:51:33 +0000 Received: from localhost ([127.0.0.1]:40379 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t7yQX-0005hN-8u for submit@debbugs.gnu.org; Mon, 04 Nov 2024 09:51:33 -0500 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21109) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1t7yQU-0005hF-JH for 71146-done@debbugs.gnu.org; Mon, 04 Nov 2024 09:51:31 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1730731887; cv=none; d=zohomail.com; s=zohoarc; b=UK1tgk/r+BKovPviqBmCwGnnaVrKYeCfP22O6Aex5iEESnEMa0ftJZPYtXQDXiTVnRGESbH+++Kp8ljXkNmW4kp2oFDxRb8lClUSqNWvsknpaWcn+fa86YHmzMcGXrDFcphqKlxB7eMRHYcaubPbAIjWtadJKl8vLpnxzU9pOzs= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1730731887; h=Content-Type:Cc:Cc:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To; bh=PlPKfE4RVzxZIgtpjj4xbZ2l3Phmik2B6qcM8etgYCc=; b=kf6hgwCwIODH4IY726jYcsQbfZUNhnpwZSwRFta4c5ochvZHwIMwMepoFvmyeQ80/EUCPC/X5vbgmY+Y/2tio7K5+dg0MBNdArcvCF3rojinxItgTHSmhgBINq4SAMfOUJaKM6MspC3S4MRWERtjZNMULO7AZQLQLg2KrhMxzjc= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1730731887; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To; bh=PlPKfE4RVzxZIgtpjj4xbZ2l3Phmik2B6qcM8etgYCc=; b=HABFjEQZHUa4N0Uz4XkVoHFc7A3OV3llDA2BWOV5WVwO9djOYE7AVOkrCR0v05Vu GIe3HUtg3FsY9p96+eruGe6PyJYZb5PTBMqQIqC1oPRs18eOZ0LdAa/L59QyNTI5PCT UtWqRJS77JbMvCWt6j8cUTRbiiGGe8mIYLNNISGA= Received: by mx.zohomail.com with SMTPS id 1730731885500632.5962918593879; Mon, 4 Nov 2024 06:51:25 -0800 (PST) From: Ricardo Wurmus To: 71146-done@debbugs.gnu.org Subject: [PATCH] gnu: kallisto: Update to 0.50.1 Date: Mon, 04 Nov 2024 15:51:22 +0100 Message-ID: <87msifgihh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; format=flowed X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 71146-done Cc: guix@mawumag.com X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, I'm back to work now and just reviewed our discussion on kallisto. We may want to revisit the decision to not unbundle libbifrost and htslib at a later point, but at the moment I agree to keep the bundled libraries until we've attained more clarity. I removed the now obsolete build phase completely and I disabled parallel building (see comment). Thanks for the patch and my apologies for not being able to merge this sooner! -- Ricardo ------------=_1730731922-21933-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 23 May 2024 13:37:23 +0000 Received: from localhost ([127.0.0.1]:59091 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sA8dH-0002tW-3X for submit@debbugs.gnu.org; Thu, 23 May 2024 09:37:23 -0400 Received: from lists.gnu.org ([209.51.188.17]:47672) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sA59J-0000lK-Ii for submit@debbugs.gnu.org; Thu, 23 May 2024 05:54:14 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sA59C-0001Xs-UZ for guix-patches@gnu.org; Thu, 23 May 2024 05:54:06 -0400 Received: from mail-200165.simplelogin.co ([176.119.200.165]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1sA59A-0002Zy-DR for guix-patches@gnu.org; Thu, 23 May 2024 05:54:06 -0400 ARC-Seal: i=1; a=rsa-sha256; d=simplelogin.co; s=arc-20230626; t=1716458041; cv=none; b=Qp1WSHP4XM4FQNZUdGo/91Jl08AgLxR3dSzTLK5zIR/h1tvNBPOWUf1njawFf0kVrJgPvuYct2aN8oGYHlHbaN/oMKj+C7S59p7j6Jjpp1QYAHsggCVopU0nIr/5bFzduTMu2icciOIlO89SJhu/xhHsffZs7JnTWUnGSl2LAK2XGO9yPL2EzY9N6tc9fKhLu3i/rKKKNgPogPxUJVBfl3NdIUWdxkXTSiVXtjm1GCM30mg6BNoE1uRnrDKBr7KpsT3XAZPZdXAqxEXDAe3eIQfjigYlgCpYYgrPf+wRqYXdO4uz3np1vYgld14eYEgRyyQTT0N+9lRUeQEnBQsNvA== ARC-Message-Signature: i=1; a=rsa-sha256; d=simplelogin.co; s=arc-20230626; t=1716458041; c=relaxed/simple; bh=O6+FCe/Bm2IZjEWEga95sDJBDmp6zDCTNawzcuCmUuQ=; h=Date:Subject:From:To:Cc; b=LI7Ckr9MeETsutCk3NdLpxdivPA0wBXGN5u7HfRI6Y4+yDmVN3tY0lONC/gtoGTVxtOaJSZ2+U7Z0P0V6QGb4XnEc69WvkIQh1ivlBGMyADpD1d6eACw2G0y+swLlvQmip8O63ze/Im7HE/ztRSadguWF6n0D18sWWpT4xOAx7slDuvF3dF4x+tzi4AZIOUvXIzAXe/gujSS48+1iPq1gyEWOk7GO7kuTIUH9jiCzE1sjpHsWr58Nci4rOLthbJKk6iXkeygL1Ok0uWQXyK7T+WNXYQlXS47paWzhu64wl8dFFtXBcOBvu0SkWnMsv45ov6MKByrV3ZK0IcKrLeiXw== ARC-Authentication-Results: i=1; mail.protonmail.ch DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=mawumag.com; s=dkim; t=1716458041; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=O6+FCe/Bm2IZjEWEga95sDJBDmp6zDCTNawzcuCmUuQ=; b=KZtfuo39CNVfbs2y5lepJLI8TrX5zMlaTd0QJT3tkW2W0MCOaWLrJ8Hhn/XUoJHdqOwLkP E39o/PYrPlfEB3pJDaeSyr4iAC9ovSPOu7BUhx25nzv/R0cOJqg71Xeu1g50X42+yqe21F nxsKltcSv3qX8GLsut2WywJAHkeqOs4= Date: Thu, 23 May 2024 09:53:54 +0000 Subject: [PATCH] gnu: kallisto: Update to 0.50.1 MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs" Content-Transfer-Encoding: 7bit From: guix@mawumag.com To: guix-patches@gnu.org Message-ID: <171645804083.6.7508412953776945309.337355746@mawumag.com> X-SimpleLogin-Type: Reply X-SimpleLogin-EmailLog-ID: 337355747 X-SimpleLogin-Want-Signing: yes Received-SPF: pass client-ip=176.119.200.165; envelope-from=sl.lmysyibtgm3tgnjvg42dolbagezdknzxge2f2.a6nspo4xe2kk2@mawumag.com; helo=mail-200165.simplelogin.co X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -1.3 (-) X-Debbugs-Envelope-To: submit X-Mailman-Approved-At: Thu, 23 May 2024 09:37:21 -0400 Cc: Ricardo Wurmus X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -2.3 (--) This is a multi-part message in MIME format. --b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Updated kallisto to 0.50.1, it now supports more single-cell technologies (= e.g. SPLiT-seq). I had to modify the 'do-not-use-bundled-htslib snippet to make one regex mo= re selective---in this new version it the previous regex was mistakenly mod= ifying parts of CMakeLists.txt other than the intended one. --b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs Content-Type: text/x-patch; name=0001-gnu-kallisto-Update-to-0.50.1.patch Content-Transfer-Encoding: base64 Content-Disposition: attachment; filename=0001-gnu-kallisto-Update-to-0.50.1.patch RnJvbSA5YmVjMWM1YmYxNGI2NDRlZjcxNDdiMWJjNjZhY2FlYTZhOTAzODMwIE1vbiBTZXAgMTcg MDA6MDA6MDAgMjAwMQpNZXNzYWdlLUlEOiA8OWJlYzFjNWJmMTRiNjQ0ZWY3MTQ3YjFiYzY2YWNh ZWE2YTkwMzgzMC4xNzE2NDU3MjQxLmdpdC5ndWl4QG1hd3VtYWcuY29tPgpGcm9tOiBNYXJjbyBC YWdnaW8gPGd1aXhAbWF3dW1hZy5jb20+CkRhdGU6IFRodSwgMjMgTWF5IDIwMjQgMDg6NTI6MDYg KzAyMDAKU3ViamVjdDogW1BBVENIXSBnbnU6IGthbGxpc3RvOiBVcGRhdGUgdG8gMC41MC4xCgpD aGFuZ2UtSWQ6IEkxYjA0OGJlMzI4ZjZkMWQ1MDM0ZGZlMjk2ODhhNDRmMmFmMGIwMjZhCi0tLQog Z251L3BhY2thZ2VzL2Jpb2luZm9ybWF0aWNzLnNjbSB8IDE0ICsrKysrKystLS0tLS0tCiAxIGZp bGUgY2hhbmdlZCwgNyBpbnNlcnRpb25zKCspLCA3IGRlbGV0aW9ucygtKQoKZGlmZiAtLWdpdCBh L2dudS9wYWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20gYi9nbnUvcGFja2FnZXMvYmlvaW5mb3Jt YXRpY3Muc2NtCmluZGV4IGI3ZThlNTRkZTIuLjhkZWUzMDAzMjAgMTAwNjQ0Ci0tLSBhL2dudS9w YWNrYWdlcy9iaW9pbmZvcm1hdGljcy5zY20KKysrIGIvZ251L3BhY2thZ2VzL2Jpb2luZm9ybWF0 aWNzLnNjbQpAQCAtMTQ4MjAsNyArMTQ4MjAsNyBAQCAoZGVmaW5lLXB1YmxpYyBzZWdlbWVobAog KGRlZmluZS1wdWJsaWMga2FsbGlzdG8KICAgKHBhY2thZ2UKICAgICAobmFtZSAia2FsbGlzdG8i KQotICAgICh2ZXJzaW9uICIwLjQ4LjAiKQorICAgICh2ZXJzaW9uICIwLjUwLjEiKQogICAgIChz b3VyY2UgKG9yaWdpbgogICAgICAgICAgICAgICAobWV0aG9kIGdpdC1mZXRjaCkKICAgICAgICAg ICAgICAgKHVyaSAoZ2l0LXJlZmVyZW5jZQpAQCAtMTQ4MjksNyArMTQ4MjksNyBAQCAoZGVmaW5l LXB1YmxpYyBrYWxsaXN0bwogICAgICAgICAgICAgICAoZmlsZS1uYW1lIChnaXQtZmlsZS1uYW1l IG5hbWUgdmVyc2lvbikpCiAgICAgICAgICAgICAgIChzaGEyNTYKICAgICAgICAgICAgICAgIChi YXNlMzIKLSAgICAgICAgICAgICAgICAiMHd4MW5kbWhuZHNkNjA5NTJwaWFhOTI1bGs4YmpyNTlk MnlyMW0yaGNzcWNiNmNkandwbiIpKQorICAgICAgICAgICAgICAgICIwemZzNzltdjc1NTk5Y2Y5 ZDdkM2M1YTNzOGlkZ3o5cXZsNHFmemh2aGJkODd5M2R2N3AwIikpCiAgICAgICAgICAgICAgICht b2R1bGVzICcoKGd1aXggYnVpbGQgdXRpbHMpKSkKICAgICAgICAgICAgICAgKHNuaXBwZXQKICAg ICAgICAgICAgICAgICcoZGVsZXRlLWZpbGUtcmVjdXJzaXZlbHkgImV4dC9odHNsaWIvIikpKSkK QEAgLTE0ODQxLDE2ICsxNDg0MSwxNiBAQCAoZGVmaW5lLXB1YmxpYyBrYWxsaXN0bwogICAgICAg ICAgKGFkZC1hZnRlciAndW5wYWNrICdkby1ub3QtdXNlLWJ1bmRsZWQtaHRzbGliCiAgICAgICAg ICAgIChsYW1iZGEgXwogICAgICAgICAgICAgIChzdWJzdGl0dXRlKiAiQ01ha2VMaXN0cy50eHQi Ci0gICAgICAgICAgICAgICAoKCJeRXh0ZXJuYWxQcm9qZWN0X0FkZCIgbSkKKyAgICAgICAgICAg ICAgICgoIl5FeHRlcm5hbFByb2plY3RfQWRkXFwoaHRzbGliW15cXCldKlxcKSIgbSkKICAgICAg ICAgICAgICAgICAoc3RyaW5nLWFwcGVuZCAiaWYgKE5FVkVSKVxuIiBtKSkKLSAgICAgICAgICAg ICAgICgoIl5cXCkiKQotICAgICAgICAgICAgICAgIChzdHJpbmctYXBwZW5kICIpXG5lbmRpZihO RVZFUikiKSkKICAgICAgICAgICAgICAgICgoImluY2x1ZGVfZGlyZWN0b3JpZXNcXChcXCRcXHto dHNsaWJfUFJFRklYLioiIG0pCiAgICAgICAgICAgICAgICAgKHN0cmluZy1hcHBlbmQgIiMgIiBt KSkpCiAgICAgICAgICAgICAgKHN1YnN0aXR1dGUqICJzcmMvQ01ha2VMaXN0cy50eHQiCiAgICAg ICAgICAgICAgICAoKCJ0YXJnZXRfbGlua19saWJyYXJpZXNcXChrYWxsaXN0byBrYWxsaXN0b19j b3JlIHB0aHJlYWQgXAotXFwkXFx7Q01BS0VfQ1VSUkVOVF9TT1VSQ0VfRElSXFx9Ly4uL2V4dC9o dHNsaWIvbGliaHRzLmFcXCkiKQotICAgICAgICAgICAgICAgICJ0YXJnZXRfbGlua19saWJyYXJp ZXMoa2FsbGlzdG8ga2FsbGlzdG9fY29yZSBwdGhyZWFkIGh0cykiKQorXFwkXFx7Q01BS0VfQ1VS UkVOVF9TT1VSQ0VfRElSXFx9Ly4uL2V4dC9odHNsaWIvbGliaHRzLmEgXAorXFwkXFx7aW5zdGFs bF9kaXJcXH0vYnVpbGQvc3JjL2xpYmJpZnJvc3QuYVxcKSIpCisgICAgICAgICAgICAgICAgInRh cmdldF9saW5rX2xpYnJhcmllcyhrYWxsaXN0byBrYWxsaXN0b19jb3JlIHB0aHJlYWQgaHRzIFwK KyR7aW5zdGFsbF9kaXJ9L2J1aWxkL3NyYy9saWJiaWZyb3N0LmEpIikKICAgICAgICAgICAgICAg ICgoImluY2x1ZGVfZGlyZWN0b3JpZXNcXChcXC5cXC4vZXh0L2h0c2xpYlxcKSIpICIiKSkpKSkp KQogICAgIChpbnB1dHMKICAgICAgKGxpc3QgaGRmNSBodHNsaWItMS45IHpsaWIpKQoKYmFzZS1j b21taXQ6IDM1OTdjNzM2NTg4YzQ1ZWZkZTNjMjJkNTMzZWE4Nzc0YzNmZGQyMzUKLS0gCjIuNDEu MAoK --b1_ow8wREKqKa46rSF9p0dy2voaXm7v4Zg09pqGCwaYYs-- ------------=_1730731922-21933-1--