Package: guix-patches;
Reported by: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Date: Mon, 20 May 2024 22:12:01 UTC
Severity: normal
Tags: patch
Done: Andrew Tropin <andrew <at> trop.in>
Bug is archived. No further changes may be made.
View this message in rfc822 format
From: help-debbugs <at> gnu.org (GNU bug Tracking System) To: Andrew Tropin <andrew <at> trop.in> Cc: tracker <at> debbugs.gnu.org Subject: bug#71084: closed ([PATCH 00/26] Astronomy update 2024/05.) Date: Thu, 30 May 2024 14:31:02 +0000
[Message part 1 (text/plain, inline)]
Your message dated Thu, 30 May 2024 18:29:33 +0400 with message-id <87sexzxtiq.fsf <at> trop.in> and subject line Re: [bug#71084] [PATCH 00/26] Astronomy update 2024/05. has caused the debbugs.gnu.org bug report #71084, regarding [PATCH 00/26] Astronomy update 2024/05. to be marked as done. (If you believe you have received this mail in error, please contact help-debbugs <at> gnu.org.) -- 71084: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=71084 GNU Bug Tracking System Contact help-debbugs <at> gnu.org with problems
[Message part 2 (message/rfc822, inline)]
From: Sharlatan Hellseher <sharlatanus <at> gmail.com> To: guix-patches <at> gnu.org Cc: Sharlatan Hellseher <sharlatanus <at> gmail.com> Subject: [PATCH 00/26] Astronomy update 2024/05. Date: Mon, 20 May 2024 23:11:32 +0100Hi Guix! The spring is nearly over, but the number of updates and new packages still coming with astro* soft update. With my gardening of the module it's 100% covered with pyproject-build-system for each Python project packed there and 100% built at least on x86_64 architecture. I would like to add python-pyspedas - Python-based Space Physics Environment Data Analysis Software, but it depends on <https://cdaweb.gsfc.nasa.gov/WebServices/REST> which is licensed under <https://en.wikipedia.org/wiki/NASA_Open_Source_Agreement>, so I'm doubt if it's acceptable or not to include to Guix main channel. This time some of the main highlights are: - Bringing python-yt to Guix - All python packages are build with pyproject-build-system - All packages are buildable at least on x86_64 architecture - added [4/4] - [X] python-yt :: Toolkit for analysis and visualization of volumetric data - [X] python-geopack :: to add python-pyspedas - [X] python-comm :: Python Comm implementation for the Jupyter kernel protocol; to refresh python-ipywidgets - [X] python-viresclient :: Python package which connects to a VirES server, of which there are two: VirES for Swarm <https://vires.services> and VirES for Aeolus <https://aeolus.services>; to add python-pyspedas - updated [15/15] - [X] calceph :: 3.5.5->4.0.0 - [X] python-astropy-iers-data :: 0.2024.4.15.2.45.49->0.2024.5.13.0.30.12 - [X] python-astropy :: 6.0.1->6.1.0 - [X] python-astroscrappy :: 1.1.0->1.2.0 - [X] python-ccdproc :: 2.4.1->2.4.2 - [X] python-cdflib :: 1.2.6->1.3.1 - [X] python-crds :: 11.17.20->11.17.22 - [X] python-dust-extinction :: 1.3->1.4 - [X] python-jplephem :: 2.21->2.22 - [X] python-rad :: 0.19.2->0.20.0 - [X] python-ewah-bool-utils :: 1.1.0->1.2.0 - [X] python-roman-datamodels :: 0.19.1->0.20.0 - [X] python-specutils :: 1.14.0->1.15.0 - [X] python-stsci-image :: 2.3.5->2.3.7 - [X] python-sunpy :: 5.1.2->5.1.3 After python-yt is available in Guix I would start preparing more Astropy affiliated projects some of them looks very nice: - python-tangos :: The Agile Numerical Galaxy Organisation System - python-jdaviz :: JWST astronomical data analysis tools in the Jupyter platform I also would like to bring IRAF project to Guix <https://github.com/iraf-community>, it's quite old C/Fortran based project now maintained by Ole Streicher (maintainer of https://salsa.debian.org/debian-astro-team) Build stats: --8<---------------cut here---------------start------------->8--- ./pre-inst-env guix build calceph python-astropy python-astropy-iers-data python-astroscrappy python-ccdproc python-cdflib python-comm python-crds python-dust-extinction python-ephem python-ewah-bool-utils python-geopack python-jplephem python-more-itertools <at> 10.2.0 python-pyvo python-rad python-roman-datamodels python-sep python-sgp4 python-specutils python-stsci-image python-sunpy python-unyt python-viresclient python-yt /gnu/store/lr7m7ka3i0317jg7m9ysn0g96k1yab9f-python-yt-4.3.1 /gnu/store/nw3ic2scsqp8060clzsxnf8xhchslpcl-python-viresclient-0.11.6 /gnu/store/ymbksv1p22rdn9fc1n7mwylpykmkdlg5-python-unyt-3.0.1 /gnu/store/n10j56jpgwcbqrvx7ii98y2pc536wy3f-python-sunpy-5.1.3 /gnu/store/jk3fphkvc4iahjsbc77mdxzdx79x9xa0-python-stsci-image-2.3.7 /gnu/store/myxavg0514pn9x0dz9bnpiyd6v00m9lg-python-specutils-1.15.0 /gnu/store/6v18fgiz99d5aj02q9z4y2smyxqja255-python-sgp4-2.23 /gnu/store/nw9n46c8x4iggz46sl2zwx4c8cvic5lg-python-sep-1.2.1 /gnu/store/z5l3g9d13g8x8dpsskgy3binhvicjfbi-python-roman-datamodels-0.20.0 /gnu/store/ck4m1qxc3nyhsim151i71afx0ay0zkfj-python-rad-0.20.0 /gnu/store/hbf6457zl31ararwhzlnvkv346f7r27k-python-pyvo-1.5.1 /gnu/store/qww87pdssi9b85kj6ma76f7pfrjbpmll-python-more-itertools-10.2.0 /gnu/store/4c71a65dv847gz1hngd2207alam1kl89-python-jplephem-2.22 /gnu/store/xw075kdkfgl1wf2gdyg65jafms7rpn3d-python-geopack-1.0.10 /gnu/store/nrpkwyxrak55glgqddpx5a5f62ddsyyw-python-ewah-bool-utils-1.2.0 /gnu/store/lryxxm8di55pzg92p5dlx97bw5slc099-python-ephem-4.1.5 /gnu/store/g2mdxjgrn2j1y0lqbifw5ybiq6bwpy0a-python-dust-extinction-1.4 /gnu/store/672rz2imm266pzyhhp9lkfxhs7f1v2lp-python-crds-11.17.22 /gnu/store/90y7ajcl05r6m4w2mhcfkrilzniqwvfc-python-comm-0.2.2 /gnu/store/vck9spqki4rv110v67j60jhqh655y1lr-python-cdflib-1.3.1 /gnu/store/8q4kickgib3cvsq7v8f806b16i4yj3ff-python-ccdproc-2.4.2 /gnu/store/5qlbc8i1yqj9jydmd5cfgkwfj5p9y2hc-python-astroscrappy-1.2.0 /gnu/store/snnhw89cd5x7xrg83x9vzzxx9771wss4-python-astropy-iers-data-0.2024.5.13.0.30.12 /gnu/store/k0v376wnz1l1f1kv4915bggavvywnlbj-python-astropy-6.1.0 /gnu/store/pdfc2v9bd4qlmzdm2d0bqrlbznfgxg8c-calceph-4.0.0 --8<---------------cut here---------------end--------------->8--- Dependent build stats: --8<---------------cut here---------------start------------->8--- ./pre-inst-env guix refresh --list-dependent calceph python-astropy python-astropy-iers-data python-astroscrappy python-ccdproc python-cdflib python-comm python-crds python-dust-extinction python-ephem python-ewah-bool-utils python-geopack python-jplephem python-more-itertools <at> 10.2.0 python-pyvo python-rad python-roman-datamodels python-sep python-sgp4 python-specutils python-stsci-image python-sunpy python-unyt python-viresclient python-yt Building the following 15 packages would ensure 63 dependent packages are rebuilt: python-asdf-compression <at> 0.0.1-0.57cc7e7 python-asdf-zarr <at> 0.0.3 python-cesium <at> 0.12.1 python-viresclient <at> 0.11.6 scamp <at> 2.10.0 ginga-qt5 <at> 5.0.1 python-poliastro <at> 0.17.0 python-ginga <at> 5.0.1 python-astroplan <at> 0.10 python-aplpy <at> 2.1.0 python-astroalign <at> 2.5.1 python-jwst <at> 1.14.0 python-radiospectra <at> 0.5.0 python-yt <at> 4.3.1 python-pyjanitor <at> 0.27.0 /gnu/store/sfmkwmpihpjv10gqrbbxqzqcsb6q9ncz-python-pyjanitor-0.27.0 /gnu/store/lr7m7ka3i0317jg7m9ysn0g96k1yab9f-python-yt-4.3.1 /gnu/store/vpf2grh18jq4n59z5xk91c680g3hjkg5-python-radiospectra-0.5.0 /gnu/store/8bdpnp17zibddbgsiwyh632h794g7jrq-python-jwst-1.14.0 /gnu/store/5yrrkl1lshnz9vdmnqmlb4kysl3m1b6m-python-astroalign-2.5.1 /gnu/store/l6g5fla44hhs2rdayj9pk9wzl4hdjn6k-python-aplpy-2.1.0 /gnu/store/84gmp7ykakd4zwah9bgm59smq5zwfpj2-python-astroplan-0.10 /gnu/store/5dk6m10zr628rlj3abw965an223gh5m9-python-ginga-5.0.1 /gnu/store/35m97lhq3v26fgy5kcsyrh91sfdbkq59-python-poliastro-0.17.0 /gnu/store/b4nmarr0zzac92f32dq9hk157iszl41r-ginga-qt5-5.0.1 /gnu/store/1ibrbzqh6nm0mlkr0aafm303q2f1qaa9-scamp-2.10.0 /gnu/store/nw3ic2scsqp8060clzsxnf8xhchslpcl-python-viresclient-0.11.6 /gnu/store/0rnjpghin70x95w5psgk3ikj8xqf0iic-python-cesium-0.12.1 /gnu/store/3ycib8ybqxyq07p4f5mf5baa20fnqm1s-python-asdf-zarr-0.0.3 /gnu/store/mcl0lxi5w74b8m21iivrc8grwna1lyx4-python-asdf-compression-0.0.1-0.57cc7e7 --8<---------------cut here---------------end--------------->8--- Sharlatan Hellseher (26): gnu: python-sep: Refresh package style. gnu: python-ephem: Use pyproject-build-system. gnu: python-sgp4: Use pyproject-build-system. gnu: packages/astronomy: Minimize import from python build system. gnu: calceph: Update to 4.0.0. gnu: python-astropy-iers-data: Update to 0.2024.5.13.0.30.12. gnu: python-astropy: Update to 6.1.0. gnu: python-pyvo: Disable a failing test. gnu: python-astroscrappy: Update to 1.2.0. gnu: python-dust-extinction: Update to 1.4. gnu: python-ccdproc: Update to 2.4.2. gnu: python-cdflib: Update to 1.3.1. gnu: python-crds: Update to 11.17.22. gnu: python-jplephem: Update to 2.22. gnu: python-rad: Update to 0.20.0 gnu: python-roman-datamodels: Update to 0.20.0. gnu: python-sunpy: Update to 5.1.3. gnu: python-stsci-image: Update to 2.3.7. gnu: python-specutils: Update to 1.15.0. gnu: python-unyt: Fix version detection. gnu: python-ewah-bool-utils: Update to 1.2.0. gnu: Add python-viresclient. gnu: Add python-geopack. gnu: Add python-comm. gnu: Add python-more-itertools-next. gnu: Add python-yt. gnu/packages/astronomy.scm | 316 +++++++++++++++++++--------- gnu/packages/geo.scm | 26 +++ gnu/packages/jupyter.scm | 27 +++ gnu/packages/python-compression.scm | 4 +- gnu/packages/python-science.scm | 2 +- gnu/packages/python-xyz.scm | 35 +++ 6 files changed, 303 insertions(+), 107 deletions(-) base-commit: 7881d6085146fefda17ed9eefa133b5b5c97af87 -- 2.41.0
[Message part 3 (message/rfc822, inline)]
From: Andrew Tropin <andrew <at> trop.in> To: Sharlatan Hellseher <sharlatanus <at> gmail.com>, 71084-done <at> debbugs.gnu.org Cc: Andreas Enge <andreas <at> enge.fr>, Sharlatan Hellseher <sharlatanus <at> gmail.com>, Eric Bavier <bavier <at> posteo.net> Subject: Re: [bug#71084] [PATCH 00/26] Astronomy update 2024/05. Date: Thu, 30 May 2024 18:29:33 +0400[Message part 4 (text/plain, inline)]On 2024-05-20 23:11, Sharlatan Hellseher wrote: > Hi Guix! > > The spring is nearly over, but the number of updates and new packages > still coming with astro* soft update. With my gardening of the module > it's 100% covered with pyproject-build-system for each Python project > packed there and 100% built at least on x86_64 architecture. > > I would like to add python-pyspedas - Python-based Space Physics > Environment Data Analysis Software, but it depends on > <https://cdaweb.gsfc.nasa.gov/WebServices/REST> which is licensed under > <https://en.wikipedia.org/wiki/NASA_Open_Source_Agreement>, so I'm doubt > if it's acceptable or not to include to Guix main channel. > > This time some of the main highlights are: > - Bringing python-yt to Guix > - All python packages are build with pyproject-build-system > - All packages are buildable at least on x86_64 architecture > > - added [4/4] > - [X] python-yt :: Toolkit for analysis and visualization of > volumetric data > - [X] python-geopack :: to add python-pyspedas > - [X] python-comm :: Python Comm implementation for the Jupyter kernel > protocol; to refresh python-ipywidgets > - [X] python-viresclient :: Python package which connects to a VirES > server, of which there are two: VirES for Swarm > <https://vires.services> and VirES for Aeolus > <https://aeolus.services>; to add python-pyspedas > > - updated [15/15] > - [X] calceph :: 3.5.5->4.0.0 > - [X] python-astropy-iers-data :: 0.2024.4.15.2.45.49->0.2024.5.13.0.30.12 > - [X] python-astropy :: 6.0.1->6.1.0 > - [X] python-astroscrappy :: 1.1.0->1.2.0 > - [X] python-ccdproc :: 2.4.1->2.4.2 > - [X] python-cdflib :: 1.2.6->1.3.1 > - [X] python-crds :: 11.17.20->11.17.22 > - [X] python-dust-extinction :: 1.3->1.4 > - [X] python-jplephem :: 2.21->2.22 > - [X] python-rad :: 0.19.2->0.20.0 > - [X] python-ewah-bool-utils :: 1.1.0->1.2.0 > - [X] python-roman-datamodels :: 0.19.1->0.20.0 > - [X] python-specutils :: 1.14.0->1.15.0 > - [X] python-stsci-image :: 2.3.5->2.3.7 > - [X] python-sunpy :: 5.1.2->5.1.3 > > After python-yt is available in Guix I would start preparing more Astropy > affiliated projects some of them looks very nice: > - python-tangos :: The Agile Numerical Galaxy Organisation System > - python-jdaviz :: JWST astronomical data analysis tools in the Jupyter platform > > I also would like to bring IRAF project to Guix > <https://github.com/iraf-community>, it's quite old C/Fortran based > project now maintained by Ole Streicher (maintainer of > https://salsa.debian.org/debian-astro-team) > > Build stats: > > --8<---------------cut here---------------start------------->8--- > ./pre-inst-env guix build calceph python-astropy > python-astropy-iers-data python-astroscrappy python-ccdproc > python-cdflib python-comm python-crds python-dust-extinction > python-ephem python-ewah-bool-utils python-geopack python-jplephem > python-more-itertools <at> 10.2.0 python-pyvo python-rad > python-roman-datamodels python-sep python-sgp4 python-specutils > python-stsci-image python-sunpy python-unyt python-viresclient python-yt > > /gnu/store/lr7m7ka3i0317jg7m9ysn0g96k1yab9f-python-yt-4.3.1 > /gnu/store/nw3ic2scsqp8060clzsxnf8xhchslpcl-python-viresclient-0.11.6 > /gnu/store/ymbksv1p22rdn9fc1n7mwylpykmkdlg5-python-unyt-3.0.1 > /gnu/store/n10j56jpgwcbqrvx7ii98y2pc536wy3f-python-sunpy-5.1.3 > /gnu/store/jk3fphkvc4iahjsbc77mdxzdx79x9xa0-python-stsci-image-2.3.7 > /gnu/store/myxavg0514pn9x0dz9bnpiyd6v00m9lg-python-specutils-1.15.0 > /gnu/store/6v18fgiz99d5aj02q9z4y2smyxqja255-python-sgp4-2.23 > /gnu/store/nw9n46c8x4iggz46sl2zwx4c8cvic5lg-python-sep-1.2.1 > /gnu/store/z5l3g9d13g8x8dpsskgy3binhvicjfbi-python-roman-datamodels-0.20.0 > /gnu/store/ck4m1qxc3nyhsim151i71afx0ay0zkfj-python-rad-0.20.0 > /gnu/store/hbf6457zl31ararwhzlnvkv346f7r27k-python-pyvo-1.5.1 > /gnu/store/qww87pdssi9b85kj6ma76f7pfrjbpmll-python-more-itertools-10.2.0 > /gnu/store/4c71a65dv847gz1hngd2207alam1kl89-python-jplephem-2.22 > /gnu/store/xw075kdkfgl1wf2gdyg65jafms7rpn3d-python-geopack-1.0.10 > /gnu/store/nrpkwyxrak55glgqddpx5a5f62ddsyyw-python-ewah-bool-utils-1.2.0 > /gnu/store/lryxxm8di55pzg92p5dlx97bw5slc099-python-ephem-4.1.5 > /gnu/store/g2mdxjgrn2j1y0lqbifw5ybiq6bwpy0a-python-dust-extinction-1.4 > /gnu/store/672rz2imm266pzyhhp9lkfxhs7f1v2lp-python-crds-11.17.22 > /gnu/store/90y7ajcl05r6m4w2mhcfkrilzniqwvfc-python-comm-0.2.2 > /gnu/store/vck9spqki4rv110v67j60jhqh655y1lr-python-cdflib-1.3.1 > /gnu/store/8q4kickgib3cvsq7v8f806b16i4yj3ff-python-ccdproc-2.4.2 > /gnu/store/5qlbc8i1yqj9jydmd5cfgkwfj5p9y2hc-python-astroscrappy-1.2.0 > /gnu/store/snnhw89cd5x7xrg83x9vzzxx9771wss4-python-astropy-iers-data-0.2024.5.13.0.30.12 > /gnu/store/k0v376wnz1l1f1kv4915bggavvywnlbj-python-astropy-6.1.0 > /gnu/store/pdfc2v9bd4qlmzdm2d0bqrlbznfgxg8c-calceph-4.0.0 > --8<---------------cut here---------------end--------------->8--- > > Dependent build stats: > > --8<---------------cut here---------------start------------->8--- > ./pre-inst-env guix refresh --list-dependent calceph python-astropy > python-astropy-iers-data python-astroscrappy python-ccdproc > python-cdflib python-comm python-crds python-dust-extinction > python-ephem python-ewah-bool-utils python-geopack python-jplephem > python-more-itertools <at> 10.2.0 python-pyvo python-rad > python-roman-datamodels python-sep python-sgp4 python-specutils > python-stsci-image python-sunpy python-unyt python-viresclient python-yt > > Building the following 15 packages would ensure 63 dependent packages > are rebuilt: python-asdf-compression <at> 0.0.1-0.57cc7e7 > python-asdf-zarr <at> 0.0.3 python-cesium <at> 0.12.1 python-viresclient <at> 0.11.6 > scamp <at> 2.10.0 ginga-qt5 <at> 5.0.1 python-poliastro <at> 0.17.0 python-ginga <at> 5.0.1 > python-astroplan <at> 0.10 python-aplpy <at> 2.1.0 python-astroalign <at> 2.5.1 > python-jwst <at> 1.14.0 python-radiospectra <at> 0.5.0 python-yt <at> 4.3.1 > python-pyjanitor <at> 0.27.0 > > /gnu/store/sfmkwmpihpjv10gqrbbxqzqcsb6q9ncz-python-pyjanitor-0.27.0 > /gnu/store/lr7m7ka3i0317jg7m9ysn0g96k1yab9f-python-yt-4.3.1 > /gnu/store/vpf2grh18jq4n59z5xk91c680g3hjkg5-python-radiospectra-0.5.0 > /gnu/store/8bdpnp17zibddbgsiwyh632h794g7jrq-python-jwst-1.14.0 > /gnu/store/5yrrkl1lshnz9vdmnqmlb4kysl3m1b6m-python-astroalign-2.5.1 > /gnu/store/l6g5fla44hhs2rdayj9pk9wzl4hdjn6k-python-aplpy-2.1.0 > /gnu/store/84gmp7ykakd4zwah9bgm59smq5zwfpj2-python-astroplan-0.10 > /gnu/store/5dk6m10zr628rlj3abw965an223gh5m9-python-ginga-5.0.1 > /gnu/store/35m97lhq3v26fgy5kcsyrh91sfdbkq59-python-poliastro-0.17.0 > /gnu/store/b4nmarr0zzac92f32dq9hk157iszl41r-ginga-qt5-5.0.1 > /gnu/store/1ibrbzqh6nm0mlkr0aafm303q2f1qaa9-scamp-2.10.0 > /gnu/store/nw3ic2scsqp8060clzsxnf8xhchslpcl-python-viresclient-0.11.6 > /gnu/store/0rnjpghin70x95w5psgk3ikj8xqf0iic-python-cesium-0.12.1 > /gnu/store/3ycib8ybqxyq07p4f5mf5baa20fnqm1s-python-asdf-zarr-0.0.3 > /gnu/store/mcl0lxi5w74b8m21iivrc8grwna1lyx4-python-asdf-compression-0.0.1-0.57cc7e7 > --8<---------------cut here---------------end--------------->8--- > > Sharlatan Hellseher (26): > gnu: python-sep: Refresh package style. > gnu: python-ephem: Use pyproject-build-system. > gnu: python-sgp4: Use pyproject-build-system. > gnu: packages/astronomy: Minimize import from python build system. > gnu: calceph: Update to 4.0.0. > gnu: python-astropy-iers-data: Update to 0.2024.5.13.0.30.12. > gnu: python-astropy: Update to 6.1.0. > gnu: python-pyvo: Disable a failing test. > gnu: python-astroscrappy: Update to 1.2.0. > gnu: python-dust-extinction: Update to 1.4. > gnu: python-ccdproc: Update to 2.4.2. > gnu: python-cdflib: Update to 1.3.1. > gnu: python-crds: Update to 11.17.22. > gnu: python-jplephem: Update to 2.22. > gnu: python-rad: Update to 0.20.0 > gnu: python-roman-datamodels: Update to 0.20.0. > gnu: python-sunpy: Update to 5.1.3. > gnu: python-stsci-image: Update to 2.3.7. > gnu: python-specutils: Update to 1.15.0. > gnu: python-unyt: Fix version detection. > gnu: python-ewah-bool-utils: Update to 1.2.0. > gnu: Add python-viresclient. > gnu: Add python-geopack. > gnu: Add python-comm. > gnu: Add python-more-itertools-next. > gnu: Add python-yt. > > gnu/packages/astronomy.scm | 316 +++++++++++++++++++--------- > gnu/packages/geo.scm | 26 +++ > gnu/packages/jupyter.scm | 27 +++ > gnu/packages/python-compression.scm | 4 +- > gnu/packages/python-science.scm | 2 +- > gnu/packages/python-xyz.scm | 35 +++ > 6 files changed, 303 insertions(+), 107 deletions(-) > > > base-commit: 7881d6085146fefda17ed9eefa133b5b5c97af87 Merged, thank you for the keeping guix astronomy on bleeding edge :) -- Best regards, Andrew Tropin[signature.asc (application/pgp-signature, inline)]
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