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However, it crashed instantly with the following stack trace: > dot: No such file or directory > Traceback (most recent call last): >   File > "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/bin/.xdot-real", > line 33, in >     sys.exit(load_entry_point('xdot==1.3', 'gui_scripts', 'xdot')()) >   File > "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/__main__.py", > line 80, in main >     win.set_dotcode(sys.stdin.buffer.read()) >   File > "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", > line 712, in set_dotcode >     if self.dotwidget.set_dotcode(dotcode, filename): >   File > "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", > line 148, in set_dotcode >     if self._set_dotcode(dotcode, filename, center=center): >   File > "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", > line 134, in _set_dotcode >     xdotcode = self.run_filter(dotcode) >   File > "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", > line 129, in run_filter >     return xdotcode > UnboundLocalError: local variable 'xdotcode' referenced before assignment Using `guix time-machine` I was able to identify the regression commit as 2aeb9faa421635c0531d96658414e5bf288a3142 (when Ludo' updated it to 1.3). Using `xdot` within the time machine inside the parent commit works. I've cc'd Ludo' and hopefully we can fix this! Warmly, Ada --------------14jhWvFAnxIUAk3F3HAtxQjm Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: 8bit

Hi Guix,

I was trying to use `xdot` to view to output of `guix graph` (`guix graph bash | xdot -`). However, it crashed instantly with the following stack trace:

dot: No such file or directory
Traceback (most recent call last):
  File "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/bin/.xdot-real", line 33, in <module>
    sys.exit(load_entry_point('xdot==1.3', 'gui_scripts', 'xdot')())
  File "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/__main__.py", line 80, in main
    win.set_dotcode(sys.stdin.buffer.read())
  File "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", line 712, in set_dotcode
    if self.dotwidget.set_dotcode(dotcode, filename):
  File "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", line 148, in set_dotcode
    if self._set_dotcode(dotcode, filename, center=center):
  File "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", line 134, in _set_dotcode
    xdotcode = self.run_filter(dotcode)
  File "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/lib/python3.10/site-packages/xdot/ui/window.py", line 129, in run_filter
    return xdotcode
UnboundLocalError: local variable 'xdotcode' referenced before assignment

Using `guix time-machine` I was able to identify the regression commit as 2aeb9faa421635c0531d96658414e5bf288a3142 (when Ludo' updated it to 1.3). Using `xdot` within the time machine inside the parent commit works.

I've cc'd Ludo' and hopefully we can fix this!

Warmly,

Ada

--------------14jhWvFAnxIUAk3F3HAtxQjm-- From debbugs-submit-bounces@debbugs.gnu.org Mon May 13 06:19:03 2024 Received: (at 70910) by debbugs.gnu.org; 13 May 2024 10:19:03 +0000 Received: from localhost ([127.0.0.1]:60063 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s6Slr-0008I0-Dl for submit@debbugs.gnu.org; Mon, 13 May 2024 06:19:03 -0400 Received: from eggs.gnu.org ([209.51.188.92]:47452) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s6Slp-0008Hb-Gs for 70910@debbugs.gnu.org; Mon, 13 May 2024 06:19:02 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1s6Slj-00078F-Pj; Mon, 13 May 2024 06:18:55 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=lUG4NzvbxmS3MC4eOfdSNiGrELQ/3v1Reg3iXA/R8Rc=; b=pDNECnGKUq0vgqi81lXp +d9RulCH++bLBMHklOgF+lwvdOoQCw9PQbKDUXB5eGSPmVhdBf+5cQOjjtKZgKrGsDEMjV1yCY/eM wrT5OmOcepfsPYwJnhTgNQs98o1MHnBiNm+wvM3vjPHJfk3AJNfbd3Lrp+NLS/TB4yY2YJ7hKiVfY 4ozTajmgW+jXXuisptdH40hHpSTsfmM65fCUFnhIUMvxArycGYwkpiBLU1VTKU++hanNSVXXgKr13 yGQb+bSldsyl+3/6gkmRVtPnufyS/ZCXuFtqS3YoaiWZJ7AzHj93lZv4tmnoezdh50/IwbW9SSMBt T5h6ddPt+G3xdg==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: Ada Stevenson Subject: Re: bug#70910: xdot has stopped working after update to 1.3 In-Reply-To: (Ada Stevenson's message of "Mon, 13 May 2024 04:44:29 +0000") References: Date: Mon, 13 May 2024 12:18:53 +0200 Message-ID: <87cypqc8vm.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 70910 Cc: "Artyom V. Poptsov" , 70910@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) Hi Ada, (Cc: Artyom, who updated xdot in a47fe0fdc4b13c850da29c0e11ab63d2041534c1.) Ada Stevenson skribis: > I was trying to use `xdot` to view to output of `guix graph` (`guix > graph bash | xdot -`). However, it crashed instantly with the > following stack trace: > >> dot: No such file or directory >> Traceback (most recent call last): >> =C2=A0 File >> "/gnu/store/r9mrqfpci65hsypgm7r5kpzxlm6fcd1l-xdot-1.3/bin/.xdot-real", >> line 33, in >> =C2=A0=C2=A0=C2=A0 sys.exit(load_entry_point('xdot=3D=3D1.3', 'gui_scrip= ts', 'xdot')()) Looks like the problem is that =E2=80=98dot=E2=80=99 is not in $PATH in you= r case. On my machine, =E2=80=98dot=E2=80=99 is in $PATH because I also have it in = my profile, and thus =E2=80=98guix graph bash | xdot -=E2=80=99 works fine. Artyom, I think we should replace the reference to =E2=80=98dot=E2=80=99 in= the source with its absolute file name, =E2=80=98/gnu/store/=E2=80=A6/bin/dot=E2=80=99= . That way xdot would work whether or not one has installed =E2=80=98graphviz=E2=80=99 inde= pendently. Could you take a look? Thanks, Ludo=E2=80=99. 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([5.166.209.213]) by smtp.gmail.com with ESMTPSA id 2adb3069b0e04-521f35ad4afsm1905645e87.40.2024.05.13.12.09.03 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Mon, 13 May 2024 12:09:03 -0700 (PDT) From: "Artyom V. Poptsov" To: 70910@debbugs.gnu.org Subject: [PATCH] gnu: xdot: Bugfix: Add the directory containing "dot" to the PATH. Date: Mon, 13 May 2024 22:08:52 +0300 Message-ID: X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 70910 Cc: =?UTF-8?q?Ludovic=20Court=C3=A8s?= , "Artyom V. Poptsov" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) "xdot" would always fail to run when graphviz "dot" binary is not available directly in the user system. This patch fixes it by adding graphviz binaries from the inputs to the PATH environment variable in "xdot" wrapping script. Reported by Ada Stevenson in https://debbugs.gnu.org/cgi/bugreport.cgi?bug=70910 * gnu/packages/graphviz.scm (xdot) [arguments]: Add the "bin" directory from the graphviz input to the xdot wrapping. Change-Id: Iba4bbc37daf07407ad4c18b822956fbb730c0033 --- gnu/packages/graphviz.scm | 3 +++ 1 file changed, 3 insertions(+) diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm index 0fc5c6024e..18f4fc147d 100644 --- a/gnu/packages/graphviz.scm +++ b/gnu/packages/graphviz.scm @@ -314,9 +314,12 @@ (define-public xdot (add-after 'install 'wrap (lambda* (#:key inputs outputs #:allow-other-keys) (let ((out (assoc-ref outputs "out")) + (graphviz (assoc-ref inputs "graphviz")) (gi-typelib-path (getenv "GI_TYPELIB_PATH")) (python-path (getenv "GUIX_PYTHONPATH"))) (wrap-program (string-append out "/bin/xdot") + `("PATH" ":" prefix + (,(string-append graphviz "/bin"))) `("GI_TYPELIB_PATH" ":" prefix (,gi-typelib-path)) `("GUIX_PYTHONPATH" ":" prefix base-commit: b23aa4c1d6ebbbee316d2f2bee87ad4ce7c67345 -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Tue May 14 04:06:19 2024 Received: (at 70910) by debbugs.gnu.org; 14 May 2024 08:06:19 +0000 Received: from localhost ([127.0.0.1]:37813 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s6nAs-0004HV-Tq for submit@debbugs.gnu.org; Tue, 14 May 2024 04:06:19 -0400 Received: from mail-pf1-f170.google.com ([209.85.210.170]:61866) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s6mIY-0003fs-Nk for 70910@debbugs.gnu.org; Tue, 14 May 2024 03:10:15 -0400 Received: by mail-pf1-f170.google.com with SMTP id d2e1a72fcca58-6f4e59081e6so2611195b3a.3 for <70910@debbugs.gnu.org>; Tue, 14 May 2024 00:10:05 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1715670539; x=1716275339; darn=debbugs.gnu.org; h=content-transfer-encoding:from:cc:content-language:subject:to :user-agent:mime-version:date:message-id:from:to:cc:subject:date :message-id:reply-to; bh=OLdQ18zciAoYhzMV5z2WSQ6rgVOiTwihm+xlQXktodk=; b=cQ8fE5qlz1UDvZYfbyYO3eEAhhsSRf3TltfvHioGWjrrIjCiku9g641T+q8cH2j5e4 uDUbXYpQdva5Up/JuDbEjjVmq6IOO987hMkTuu6D37dFyp6HJ41pNJ6FulEazitIusYU XrHw1irmhLZ6EzConCtUpjecY7lxbH2CLZ5vPC2pIphKgWhT7B4qBHiWkyIJ9bZz8RzA Fo2CzDh7jJxm1/6zMBUooYdW/tQLM3bRY3P5pN9EyZn+vQvBRnkim4OsEJGWCznhPhsl hryLQRWbhMhX+Xzz86dl7R0LfAhS0AFEWw27jNimlEqrmPqH3kP2lCpS5fprqAI06a8C sFoA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1715670539; x=1716275339; h=content-transfer-encoding:from:cc:content-language:subject:to :user-agent:mime-version:date:message-id:x-gm-message-state:from:to :cc:subject:date:message-id:reply-to; bh=OLdQ18zciAoYhzMV5z2WSQ6rgVOiTwihm+xlQXktodk=; b=Cod9YGvlu7JS+DCg6xJGufzy9lR2jH/iyoIK7ZZqzo84jhI139tKS0o3+g4jVApeJF U5XB1LuTjhhLwoY+FjDkfZv+Q3jdDiRhl+J8Gr5gcamgOpkjrYQHaAzOJvAXFTe4XPwx KKqVlmCg7tt8VNKF6UaomfiAH9lbUXVN+m0Af1tJFUK7QgGowvRagXd80yVX8Z+v5hoK rQkB3OrnH7DaWzzye1dTyD4S6tQGsnOJMSPiu2EzSGq1iGs0TMSqeIQT6eqt6gdeu8Pb sVE5RAcdoGqB1QJefu2i4w4tEqDTbAxNXwmuth7mvdMSEAvhxFk0BIj4ZBHDp5tSPNsL aTDw== X-Gm-Message-State: AOJu0Yx9y9WVjlmdE0LknInb6FI6WRN6hy8bWnqn21PuBWUY+Kw8brLQ ZnK0mx07uVyJiaZei6qFg3oFfvNgcx5iVroben5Mgvi9XCKatdQ0b9fArQ== X-Google-Smtp-Source: AGHT+IHWkOq9Uv+1UyLTSLntOg+OVTbi6avhz8u1k+6rp9ZyGeA/9tChyp1vaoSaVhBR0EKnLWVQ4Q== X-Received: by 2002:a05:6a00:a8c:b0:6e6:ccec:fdc0 with SMTP id d2e1a72fcca58-6f4e0391139mr15242416b3a.33.1715670538974; Tue, 14 May 2024 00:08:58 -0700 (PDT) Received: from [10.130.201.50] ([134.7.244.50]) by smtp.gmail.com with ESMTPSA id d2e1a72fcca58-6f4d2af526csm8714894b3a.176.2024.05.14.00.08.55 (version=TLS1_3 cipher=TLS_AES_128_GCM_SHA256 bits=128/128); Tue, 14 May 2024 00:08:57 -0700 (PDT) Message-ID: <339d5ea7-c856-f358-5c8f-51545209666d@gmail.com> Date: Tue, 14 May 2024 07:08:46 +0000 MIME-Version: 1.0 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:102.0) Gecko/20100101 Thunderbird/102.15.0 To: 70910@debbugs.gnu.org Subject: xdot has stopped working after update to 1.3 Content-Language: en-US From: Ada Stevenson Content-Type: text/plain; charset=UTF-8; format=flowed Content-Transfer-Encoding: 7bit X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 70910 X-Mailman-Approved-At: Tue, 14 May 2024 04:06:14 -0400 Cc: poptsov.artyom@gmail.com, =?UTF-8?Q?Ludovic_Court=c3=a8s?= X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi all, I've tested the patch on a fresh checkout. LGTM! Thanks for looking into this, Ludo', Artyom! 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