Package: guix-patches;
Reported by: Nicolas Graves <ngraves <at> ngraves.fr>
Date: Fri, 10 May 2024 07:50:01 UTC
Severity: normal
Tags: patch
View this message in rfc822 format
From: Nicolas Graves <ngraves <at> ngraves.fr> To: 70858 <at> debbugs.gnu.org Cc: Nicolas Graves <ngraves <at> ngraves.fr> Subject: [bug#70858] [PATCH v5 07/48] build-system/pyproject: Remove python-flake8 inputs. Date: Thu, 27 Feb 2025 15:27:08 +0100
* gnu/packages/bioinformatics.scm (python-doubletdetection,
python-biom-format, python-metacells, python-ngesh)
* gnu/packages/ebook.scm (calibre)
* gnu/packages/engineering.scm (python-scikit-rf)
* gnu/packages/finance.scm (python-mt-940)
* gnu/packages/geo.scm (python-geopy)
* gnu/packages/gettext.scm (python-mdpo)
* gnu/packages/graph.scm (python-pygsp)
* gnu/packages/graphviz.scm (python-uqbar)
* gnu/packages/machine-learning.scm (python-funsor,
python-imbalanced-learn, python-captum, python-pymanopt,
python-pyro-api, python-pyro-ppl, python-linear-operator,
python-gpytorch)
* gnu/packages/python-web.scm (python-ovh, python-furl,
python-httplib2, python-http-ece, python-woob,
python-starsessions-for-pytorch-lightning)
* gnu/packages/python-xyz.scm (python-archspec, python-colorful,
python-pymd4c, python-flasgger, python-imageio,
python-importlib-ressources, python-seaborn, python-inflect,
python-yq, python-update-checker, python-eliot, python-dateparser,
python-jinja2-cli, python-verspec, python-mike,
python-simple-websocket)
* gnu/packages/simulation.scm (python-dolfin-adjoint)
* gnu/packages/statistics.scm (python-statsmodels)
* gnu/packages/vpn.scm (sshuttle)
* gnu/packages/wm.scm (qtile)
* gnu/packages/textutils.scm (python-panflute)
[native-inputs]: Remove python-flake8.
* gnu/packages/music.scm (python-mutagen):
[arguments]<#:test-flags>: Ignore flake8 quality tests.
[native-inputs]: Remove python-flake8.
* gnu/packages/protobuf.scm (python-pure-protobuf):
[arguments]<#:phases>: Remove flake8 invocation from check phase.
[native-inputs]: Remove python-flake8.
---
gnu/packages/bioinformatics.scm | 10 +++-------
gnu/packages/ebook.scm | 1 -
gnu/packages/engineering.scm | 1 -
gnu/packages/finance.scm | 4 +---
gnu/packages/gettext.scm | 1 -
gnu/packages/graph.scm | 3 +--
gnu/packages/graphviz.scm | 1 -
gnu/packages/machine-learning.scm | 15 ++++-----------
gnu/packages/music.scm | 4 ++--
gnu/packages/protobuf.scm | 4 +---
gnu/packages/python-web.scm | 15 ++++-----------
gnu/packages/python-xyz.scm | 31 ++++++++++++-------------------
gnu/packages/simulation.scm | 1 -
gnu/packages/statistics.scm | 1 -
gnu/packages/textutils.scm | 1 -
gnu/packages/vpn.scm | 1 -
gnu/packages/wm.scm | 1 -
17 files changed, 28 insertions(+), 67 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1a0ae8918e..bda5ab3a8f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2824,8 +2824,7 @@ (define-public python-doubletdetection
python-scipy
python-tqdm))
(native-inputs
- (list python-flake8
- python-poetry-core
+ (list python-poetry-core
python-pytest))
(home-page "https://github.com/JonathanShor/DoubletDetection")
(synopsis
@@ -3169,7 +3168,6 @@ (define-public python-metacells
python-threadpoolctl
python-umap-learn))
(native-inputs (list python-bumpversion
- python-flake8
python-isort
python-mypy
python-mypy-extensions
@@ -3207,7 +3205,7 @@ (define-public python-ngesh
(base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-ete3 python-numpy python-six))
- (native-inputs (list python-flake8 python-pytest python-twine
+ (native-inputs (list python-pytest python-twine
python-wheel))
(home-page "https://github.com/tresoldi/ngesh")
(synopsis "Library for phylogenetic tree simulation")
@@ -3923,7 +3921,6 @@ (define-public python-biom-format
(propagated-inputs
(list python-anndata
python-click
- python-flake8
python-future
python-h5py
python-numpy
@@ -24051,8 +24048,7 @@ (define-public scvelo
python-umap-learn
pybind11))
(native-inputs
- (list python-flake8
- python-hypothesis
+ (list python-hypothesis
python-pytest
python-setuptools-scm
python-wheel))
diff --git a/gnu/packages/ebook.scm b/gnu/packages/ebook.scm
index 46ec951916..75e14801dd 100644
--- a/gnu/packages/ebook.scm
+++ b/gnu/packages/ebook.scm
@@ -156,7 +156,6 @@ (define-public calibre
(native-inputs
(list bash-minimal
pkg-config
- python-flake8
python-pyqt-builder
qtbase-5 ; for qmake
xdg-utils))
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index 8ca3b87ff2..3882a35d6b 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -2965,7 +2965,6 @@ (define-public python-scikit-rf
python-qtpy
python-scipy))
(native-inputs (list python-coverage
- python-flake8
python-nbval
python-networkx
python-pytest
diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 9805679597..f3be674c01 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -2310,9 +2310,7 @@ (define-public python-mt-940
;; Remove custom --cov flags.
(delete-file "pytest.ini")
(invoke "pytest" "-vv")))))))
- (native-inputs (list python-flake8
- python-pytest
- python-pyyaml))
+ (native-inputs (list python-pytest python-pyyaml))
(home-page "https://mt940.readthedocs.io/")
(synopsis "Python parser for MT940-encoded SWIFT data")
(description
diff --git a/gnu/packages/gettext.scm b/gnu/packages/gettext.scm
index 7862c296bd..29cdbab915 100644
--- a/gnu/packages/gettext.scm
+++ b/gnu/packages/gettext.scm
@@ -226,7 +226,6 @@ (define-public mdpo
(build-system python-build-system)
(native-inputs
(list python-bump2version
- python-flake8
python-flake8-implicit-str-concat
python-flake8-print
python-isort
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 75ebbff2db..57c4bd05ed 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -570,8 +570,7 @@ (define-public python-pygsp
"")))))))
(propagated-inputs (list python-numpy python-scikit-image python-scipy))
(native-inputs
- (list python-coverage python-coveralls python-flake8
- python-pytest))
+ (list python-coverage python-coveralls python-pytest))
(home-page "https://github.com/epfl-lts2/pygsp")
(synopsis "Graph Signal Processing in Python")
(description "The PyGSP is a Python package to ease signal processing on
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index defd53df73..0d3db31212 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -224,7 +224,6 @@ (define-public python-uqbar
and not test_sphinx_book_text_broken_strict")))
(native-inputs
(list graphviz
- python-flake8
python-isort
python-mypy
python-pytest
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 480e534823..65cb08e2f3 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -229,8 +229,7 @@ (define-public python-funsor
(propagated-inputs (list python-makefun python-multipledispatch
python-numpy python-opt-einsum
python-typing-extensions))
- (native-inputs (list python-flake8
- python-isort
+ (native-inputs (list python-isort
python-nbsphinx
python-pandas
python-pillow
@@ -1143,7 +1142,6 @@ (define-public python-pymanopt
((",!=1.12\\.\\*") "")))))))
(propagated-inputs (list python-numpy python-scipy))
(native-inputs (list python-autograd
- python-flake8
python-flake8-bugbear
python-isort
python-matplotlib
@@ -2152,8 +2150,7 @@ (define-public python-imbalanced-learn
(getcwd)))))))
(propagated-inputs (list python-joblib python-numpy python-scikit-learn
python-scipy python-threadpoolctl))
- (native-inputs (list python-flake8
- python-keras
+ (native-inputs (list python-keras
python-mypy
python-pandas
python-pytest
@@ -5321,7 +5318,6 @@ (define-public python-captum
(list python-matplotlib python-numpy python-pytorch python-tqdm))
(native-inputs (list jupyter
python-annoy
- python-flake8
python-flask
python-flask-compress
python-ipython
@@ -5842,8 +5838,7 @@ (define-public python-pyro-api
(build-system python-build-system)
(arguments '(#:tests? #false)) ;requires pyro
(native-inputs
- (list python-flake8
- python-ipython
+ (list python-ipython
python-pytest
python-sphinx
python-sphinx-rtd-theme))
@@ -5900,8 +5895,7 @@ (define-public python-linear-operator
python-pytorch
python-scipy
python-typeguard))
- (native-inputs (list python-flake8
- python-flake8-print
+ (native-inputs (list python-flake8-print
python-pytest
python-setuptools
python-setuptools-scm
@@ -5932,7 +5926,6 @@ (define-public python-gpytorch
python-scikit-learn
python-scipy))
(native-inputs (list python-coverage
- python-flake8
python-flake8-print
python-nbval
python-pytest
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index bf47489d34..7d28ef4b58 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -4116,6 +4116,7 @@ (define-public python-mutagen
(build-system pyproject-build-system)
(arguments
(list
+ #:test-flags '(list "--ignore=tests/quality/test_flake8.py")
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'remove-hypothesis-deadlines
@@ -4126,8 +4127,7 @@ (define-public python-mutagen
(("( +)@given" all spaces)
(string-append spaces "@settings(deadline=None)\n" all))))))))
(native-inputs
- (list python-flake8
- python-hypothesis
+ (list python-hypothesis
python-pytest
python-setuptools
python-wheel))
diff --git a/gnu/packages/protobuf.scm b/gnu/packages/protobuf.scm
index 9d81b1c508..203e4909d6 100644
--- a/gnu/packages/protobuf.scm
+++ b/gnu/packages/protobuf.scm
@@ -502,7 +502,7 @@ (define-public python-pure-protobuf
(base32 "15dp5pvazd0jx4wzzh79080ah7hkpd3axh40al9vhzs2hf3v90hx"))))
(build-system python-build-system)
(native-inputs
- (list python-flake8 python-pytest python-pytest-cov python-isort))
+ (list python-pytest python-pytest-cov python-isort))
(arguments
`(#:phases
(modify-phases %standard-phases
@@ -510,8 +510,6 @@ (define-public python-pure-protobuf
(lambda _
(invoke "pytest" "--cov-report" "term-missing" "--cov"
"pure_protobuf")
- (invoke "flake8" "pure_protobuf" "tests"
- "--ignore=F541")
(invoke "isort" "-rc" "-c" "pure_protobuf" "tests"))))))
(home-page "https://pypi.org/project/pure-protobuf/")
(synopsis "Protobuf implementation using dataclasses")
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 17c36189f7..c654f3f13d 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1605,7 +1605,6 @@ (define-public python-ovh
(arguments (list #:tests? #f)) ; XXX: tests require networking
(propagated-inputs (list python-requests))
(native-inputs (list python-coverage
- python-flake8
python-isort
python-pytest
python-pytest-cov
@@ -1921,8 +1920,6 @@ (define-public python-furl
(build-system python-build-system)
(propagated-inputs
(list python-six python-orderedmultidict))
- (native-inputs
- (list python-flake8))
(home-page "https://github.com/gruns/furl")
(synopsis "URL manipulation in Python")
(description "Furl provides an easy-to-use alternative to the
@@ -1955,7 +1952,6 @@ (define-public python-httplib2
(("==") ">=")))))))
(native-inputs
(list python-cryptography
- python-flake8
python-future
python-mock
python-pytest
@@ -8583,7 +8579,7 @@ (define-public python-http-ece
(propagated-inputs
(list python-cryptography))
(native-inputs
- (list python-coverage python-flake8 python-mock python-nose))
+ (list python-coverage python-mock python-nose))
(home-page "https://github.com/web-push-libs/encrypted-content-encoding")
(synopsis "Encrypted Content Encoding for HTTP")
(description
@@ -9048,8 +9044,7 @@ (define-public python-simple-websocket
;; Requires Internet access to resolve example.com
(list #:test-flags '(list "--ignore=tests/test_client.py")))
(propagated-inputs (list python-wsproto))
- (native-inputs (list python-flake8
- python-pytest
+ (native-inputs (list python-pytest
python-pytest-cov
python-setuptools
python-tox
@@ -9660,8 +9655,7 @@ (define-public python-woob
python-six
python-unidecode))
(native-inputs
- (list python-coverage python-flake8 python-nose python-selenium
- python-xunitparser))
+ (list python-coverage python-nose python-selenium python-xunitparser))
(home-page "https://woob.tech/")
(synopsis "Woob, Web Outside Of Browsers")
(description "Woob is a collection of applications able to interact with
@@ -10321,8 +10315,7 @@ (define-public python-starsessions
python-itsdangerous
python-starlette))
(native-inputs
- (list python-flake8
- python-httpx
+ (list python-httpx
python-mypy
python-poetry-core
python-pytest
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index f2c5f7fa63..52f7ebde3f 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -396,8 +396,7 @@ (define-public python-archspec
python-scikit-learn
python-tables
python-typing-extensions))
- (native-inputs (list python-flake8
- python-isort
+ (native-inputs (list python-isort
python-poetry-core
python-pytest
python-pytest-cov))
@@ -1555,8 +1554,7 @@ (define-public python-colorful
(base32 "0kyy9qhvrb5m9h8xmri7c88i0k1g5qc7017anw39gx44an7mn33y"))))
(build-system pyproject-build-system)
(native-inputs
- (list python-coverage python-flake8 python-pytest python-setuptools
- python-wheel))
+ (list python-coverage python-pytest python-setuptools python-wheel))
(propagated-inputs
(list python-colorama))
(home-page "http://github.com/timofurrer/colorful")
@@ -2926,7 +2924,7 @@ (define-public python-pymd4c
(inputs
(list md4c))
(native-inputs
- (list python-flake8 python-pkgconfig pkg-config))
+ (list python-pkgconfig pkg-config))
(home-page "https://github.com/dominickpastore/pymd4c")
(synopsis "Python bindings for MD4C")
(description
@@ -12022,8 +12020,7 @@ (define-public python-imageio
(propagated-inputs
(list python-imageio-ffmpeg python-numpy python-pillow python-tifffile))
(native-inputs
- (list python-flake8
- python-fsspec
+ (list python-fsspec
python-pytest
python-pytest-cov
python-setuptools
@@ -12837,8 +12834,7 @@ (define-public python-importlib-resources
(setenv "PYTHONPATH"
(string-append (getcwd) "/_custom_build")))))))
(native-inputs
- (list python-flake8
- python-pytest
+ (list python-pytest
python-pytest-black
python-pytest-checkdocs
python-pytest-cov
@@ -15110,8 +15106,7 @@ (define-public python-seaborn
python-scipy
python-statsmodels))
(native-inputs
- (list python-flake8
- python-flit-core
+ (list python-flit-core
python-ipykernel
python-nbconvert
python-numpydoc
@@ -28217,7 +28212,7 @@ (define-public python-yq
(inputs
(list python-argcomplete python-pyyaml python-xmltodict python-toml jq))
(native-inputs
- (list python-coverage python-flake8 python-setuptools-scm python-wheel))
+ (list python-coverage python-setuptools-scm python-wheel))
(home-page "https://github.com/kislyuk/yq")
(synopsis "Command-line YAML/XML processor")
(description
@@ -29225,7 +29220,7 @@ (define-public python-update-checker
(base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba"))))
(build-system python-build-system)
(propagated-inputs (list python-requests))
- (native-inputs (list python-flake8 python-pytest))
+ (native-inputs (list python-pytest))
(home-page "https://github.com/bboe/update_checker")
(synopsis "Python module that will check for package updates")
(description "This package provides a Python module that will check for
@@ -33558,7 +33553,6 @@ (define-public python-eliot
(list python-boltons python-orjson python-pyrsistent python-zope-interface))
(native-inputs
(list python-coverage
- python-flake8
python-hypothesis
python-pytest
python-pytest-xdist
@@ -34346,7 +34340,7 @@ (define-public python-dateparser
(list python-dateutil python-pytz python-regex python-ruamel.yaml
python-tzlocal))
(native-inputs
- (list python-flake8 python-pytest python-parameterized tzdata-for-tests
+ (list python-pytest python-parameterized tzdata-for-tests
python-setuptools python-wheel))
(arguments
`(#:phases
@@ -35772,8 +35766,7 @@ (define-public python-jinja2-cli
(propagated-inputs
(list python-jinja2))
(native-inputs
- (list python-flake8
- python-jinja2
+ (list python-jinja2
python-pytest
python-setuptools
python-wheel))
@@ -38326,7 +38319,7 @@ (define-public python-verspec
(base32
"07n06wv85fm4vl1ird2mja0823js3x322wgs9gdnq1djjyk4ql64"))))
(build-system python-build-system)
- (native-inputs (list python-coverage python-flake8 python-mypy
+ (native-inputs (list python-coverage python-mypy
python-pretend python-pytest))
(arguments
`(#:phases (modify-phases %standard-phases
@@ -38763,7 +38756,7 @@ (define-public python-mike
"0yxp816x7s948xsd0fifvq9shg01xdxlifd9rzf5y2rd9iwz3hsn"))))
(build-system python-build-system)
(native-inputs
- (list python-coverage python-flake8 python-shtab))
+ (list python-coverage python-shtab))
(propagated-inputs
(list python-jinja2 python-mkdocs python-pyyaml python-verspec))
(home-page "https://github.com/jimporter/mike")
diff --git a/gnu/packages/simulation.scm b/gnu/packages/simulation.scm
index 3af29aeeaa..1eed4fd180 100644
--- a/gnu/packages/simulation.scm
+++ b/gnu/packages/simulation.scm
@@ -1252,7 +1252,6 @@ (define-public python-dolfin-adjoint
(list pkg-config
python-coverage
python-decorator
- python-flake8
python-pkgconfig
python-pytest))
(propagated-inputs
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index ceca13084e..58975e652f 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -2670,7 +2670,6 @@ (define-public python-statsmodels
(native-inputs
(list python-colorama
python-cython
- python-flake8
python-isort
python-joblib
python-matplotlib
diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index c886b009be..1bdd58269c 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -1758,7 +1758,6 @@ (define-public python-panflute
(propagated-inputs (list python-click python-pyyaml))
(native-inputs (list python-configparser
python-coverage
- python-flake8
python-pandocfilters
python-pytest
python-pytest-cov
diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 0b62e8c7cf..53706a8de1 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -1034,7 +1034,6 @@ (define (install-man-page file)
(native-inputs
(list python-setuptools-scm
;; For tests only.
- python-flake8
python-mock
python-poetry-core
python-pytest-cov
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 0e6153d7bd..8d1bce1009 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -864,7 +864,6 @@ (define-public qtile
python-xcffib))
(native-inputs
(list pkg-config
- python-flake8
python-pep8-naming
python-pytest
python-pytest-cov
--
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Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.