Package: guix-patches;
Reported by: Nicolas Graves <ngraves <at> ngraves.fr>
Date: Fri, 10 May 2024 07:50:01 UTC
Severity: normal
Tags: patch
View this message in rfc822 format
From: Nicolas Graves <ngraves <at> ngraves.fr> To: 70858 <at> debbugs.gnu.org Subject: [bug#70858] [PATCH python-team v4 09/52] build-system/pyproject: Remove python-black inputs. Date: Thu, 30 Jan 2025 23:40:47 +0100
* gnu/packages/bioinformatics.scm (python-doubletdetection,
python-liana-py, python-metacells, python-ngesh, scvelo)
* gnu/packages/databases.scm (datasette)
* gnu/packages/finance.scm (python-trezor)
* gnu/packages/graph.scm (python-graphtools)
* gnu/packages/jupyter.scm (python-papermill)
* gnu/packages/machine-learning.scm (python-funsor,
python-imbalanced-learn, python-hyperopt, python-captum)
* gnu/packages/python-check.scm (python-vcrpy)
* gnu/packages/python-web.scm (python-ovh, python-openai,
* gnu/packages/python-science.scm (python-scikit-survival)
python-starsessions-for-pytorch-lightning)
* gnu/packages/python-xyz.scm (python-archspec, python-pydantic-cli,
python-imageio, python-update-checker, python-eliot,
python-minikanren)
* gnu/packages/virtualization.scm (python-transient)
[native-inputs]: Remove python-black.
* gnu/packages/python-xyz.scm (ptpython,
python-get-version)[propagated-inputs]: Remove python-black.
---
gnu/packages/bioinformatics.scm | 16 +++++-----------
gnu/packages/databases.scm | 1 -
gnu/packages/finance.scm | 1 -
gnu/packages/graph.scm | 1 -
gnu/packages/jupyter.scm | 1 -
gnu/packages/machine-learning.scm | 10 +++-------
gnu/packages/python-science.scm | 3 +--
gnu/packages/python-web.scm | 8 +++-----
gnu/packages/python-xyz.scm | 19 ++++++-------------
gnu/packages/virtualization.scm | 3 +--
10 files changed, 19 insertions(+), 44 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3e8a9def35..ed05470c0f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2824,8 +2824,7 @@ (define-public python-doubletdetection
python-scipy
python-tqdm))
(native-inputs
- (list python-black
- python-flake8
+ (list python-flake8
python-poetry-core
python-pytest))
(home-page "https://github.com/JonathanShor/DoubletDetection")
@@ -3053,10 +3052,7 @@ (define-public python-liana-py
python-tqdm
tzdata))
(native-inputs
- (list python-black
- python-poetry-core
- python-pytest
- python-pytest-cov))
+ (list python-poetry-core python-pytest python-pytest-cov))
(home-page "https://github.com/saezlab/liana-py")
(synopsis "LIANA is a ligand-receptor analysis framework")
(description "This is a Ligand-Receptor inference framework. The
@@ -3172,8 +3168,7 @@ (define-public python-metacells
python-scipy
python-threadpoolctl
python-umap-learn))
- (native-inputs (list python-black
- python-bumpversion
+ (native-inputs (list python-bumpversion
python-flake8
python-isort
python-mypy
@@ -3213,7 +3208,7 @@ (define-public python-ngesh
(base32 "07sj4x95b5hvx57pw24f80sk4ag4hkg1z6wzym3pzi8n5gn85n1z"))))
(build-system pyproject-build-system)
(propagated-inputs (list python-ete3 python-numpy python-six))
- (native-inputs (list python-black python-flake8 python-pytest python-twine
+ (native-inputs (list python-flake8 python-pytest python-twine
python-wheel))
(home-page "https://github.com/tresoldi/ngesh")
(synopsis "Library for phylogenetic tree simulation")
@@ -24006,8 +24001,7 @@ (define-public scvelo
python-umap-learn
pybind11))
(native-inputs
- (list python-black
- python-flake8
+ (list python-flake8
python-hypothesis
python-pytest
python-setuptools-scm
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 9b8c95047b..40ffe3e084 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -5801,7 +5801,6 @@ (define-public datasette
(native-inputs
(list nss-certs-for-test
python-beautifulsoup4
- python-black
python-cogapp
python-pip
python-pytest
diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index bb1234ebd9..9805679597 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -1160,7 +1160,6 @@ (define-public python-trezor
python-typing-extensions))
(native-inputs ; Only needed for running the tests
(list protobuf
- python-black
python-isort
python-pillow
python-protobuf
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index f29a71c0d7..75ebbff2db 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -482,7 +482,6 @@ (define-public python-graphtools
(native-inputs
(list util-linux ;for lscpu
python-anndata
- python-black
python-coverage
python-coveralls
python-nose
diff --git a/gnu/packages/jupyter.scm b/gnu/packages/jupyter.scm
index 6c2f549583..f47d8de295 100644
--- a/gnu/packages/jupyter.scm
+++ b/gnu/packages/jupyter.scm
@@ -1157,7 +1157,6 @@ (define-public python-papermill
python-tenacity
python-tqdm))
(native-inputs (list python-attrs
- python-black
python-boto3
python-botocore
python-bumpversion
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 59a8445f23..37ccaf2b52 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -229,8 +229,7 @@ (define-public python-funsor
(propagated-inputs (list python-makefun python-multipledispatch
python-numpy python-opt-einsum
python-typing-extensions))
- (native-inputs (list python-black
- python-flake8
+ (native-inputs (list python-flake8
python-isort
python-nbsphinx
python-pandas
@@ -2155,8 +2154,7 @@ (define-public python-imbalanced-learn
(getcwd)))))))
(propagated-inputs (list python-joblib python-numpy python-scikit-learn
python-scipy python-threadpoolctl))
- (native-inputs (list python-black
- python-flake8
+ (native-inputs (list python-flake8
python-keras
python-mypy
python-pandas
@@ -2595,8 +2593,7 @@ (define-public python-hyperopt
python-six
python-tqdm))
(native-inputs
- (list python-black
- python-nose
+ (list python-nose
python-pymongo
python-pytest
python-wheel))
@@ -5326,7 +5323,6 @@ (define-public python-captum
(list python-matplotlib python-numpy python-pytorch python-tqdm))
(native-inputs (list jupyter
python-annoy
- python-black
python-flake8
python-flask
python-flask-compress
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 844bddf3ce..f18da4a326 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -888,8 +888,7 @@ (define-public python-scikit-survival
python-scikit-learn
python-scipy))
(native-inputs
- (list python-black
- python-pypa-build
+ (list python-pypa-build
python-coverage
python-cython-3
python-packaging
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 5ea9e5a709..c17485feff 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -1614,8 +1614,7 @@ (define-public python-ovh
(build-system pyproject-build-system)
(arguments (list #:tests? #f)) ; XXX: tests require networking
(propagated-inputs (list python-requests))
- (native-inputs (list python-black
- python-coverage
+ (native-inputs (list python-coverage
python-flake8
python-isort
python-pytest
@@ -3024,7 +3023,7 @@ (define-public python-openai
and not test_file_cli")))
(propagated-inputs (list python-aiohttp python-requests python-tqdm
python-typing-extensions))
- (native-inputs (list python-black python-pytest python-pytest-asyncio
+ (native-inputs (list python-pytest python-pytest-asyncio
python-pytest-mock python-setuptools python-wheel))
(home-page "https://github.com/openai/openai-python")
(synopsis "Python client library for the OpenAI API")
@@ -10327,8 +10326,7 @@ (define-public python-starsessions
python-itsdangerous
python-starlette))
(native-inputs
- (list python-black
- python-flake8
+ (list python-flake8
python-httpx
python-mypy
python-poetry-core
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 252c13ee13..0f92e69c6c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -395,8 +395,7 @@ (define-public python-archspec
python-scikit-learn
python-tables
python-typing-extensions))
- (native-inputs (list python-black
- python-flake8
+ (native-inputs (list python-flake8
python-isort
python-poetry-core
python-pylint
@@ -8858,8 +8857,7 @@ (define-public python-pydantic-cli
(propagated-inputs
(list python-pydantic))
(native-inputs
- (list python-black
- python-mypy
+ (list python-mypy
python-pytest))
(home-page "https://github.com/mpkocher/pydantic-cli")
(synopsis "Turn Pydantic defined data models into CLI tools")
@@ -11983,8 +11981,7 @@ (define-public python-imageio
(propagated-inputs
(list python-imageio-ffmpeg python-numpy python-pillow python-tifffile))
(native-inputs
- (list python-black
- python-flake8
+ (list python-flake8
python-fsspec
python-pytest
python-pytest-cov
@@ -17551,7 +17548,6 @@ (define-public python-get-version
(propagated-inputs
(list python-pygments
python-pytest
- python-pytest-black
python-pytest-cov
python-setuptools
python-testpath))
@@ -23842,8 +23838,7 @@ (define-public ptpython
(arguments
`(#:tests? #f)) ;there are no tests
(propagated-inputs
- (list python-appdirs python-black python-jedi python-prompt-toolkit
- python-pygments))
+ (list python-appdirs python-jedi python-prompt-toolkit python-pygments))
(home-page "https://github.com/jonathanslenders/ptpython")
(synopsis "Python Read-Eval-Print-Loop with nice IDE-like features")
(description
@@ -29209,7 +29204,7 @@ (define-public python-update-checker
(base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba"))))
(build-system python-build-system)
(propagated-inputs (list python-requests))
- (native-inputs (list python-black python-flake8 python-pytest))
+ (native-inputs (list python-flake8 python-pytest))
(home-page "https://github.com/bboe/update_checker")
(synopsis "Python module that will check for package updates")
(description "This package provides a Python module that will check for
@@ -33534,8 +33529,7 @@ (define-public python-eliot
(propagated-inputs
(list python-boltons python-orjson python-pyrsistent python-zope-interface))
(native-inputs
- (list python-black
- python-coverage
+ (list python-coverage
python-flake8
python-hypothesis
python-pytest
@@ -36846,7 +36840,6 @@ (define-public python-minikanren
python-pytest
python-pytest-cov
python-pylint
- python-black
python-sympy
python-versioneer
python-coverage))
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index 9ab65e6c6c..cc0346297e 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -2987,8 +2987,7 @@ (define-public python-transient
(("==")
">=")))))))
(native-inputs
- (list python-black
- python-mypy
+ (list python-mypy
python-pyhamcrest
python-setuptools
python-twine
--
2.48.1
--
Best regards,
Nicolas Graves
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.