Package: guix-patches;
Reported by: Nicolas Graves <ngraves <at> ngraves.fr>
Date: Fri, 10 May 2024 07:50:01 UTC
Severity: normal
Tags: patch
View this message in rfc822 format
From: Nicolas Graves <ngraves <at> ngraves.fr> To: 70858 <at> debbugs.gnu.org Cc: ngraves <at> ngraves.fr Subject: [bug#70858] [PATCH python-team v2 03/32] build-system/pyproject: Remove python-black input. Date: Sat, 1 Jun 2024 17:36:35 +0200
* gnu/packages/bioinformatics.scm (python-doubletdetection,
python-liana-py, scvelo)[native-inputs]: Remove python-black.
* gnu/packages/databases.scm (datasette):
[arguments]<#:test-flags>: Ignore black tests.
<#:phases>: Remove parts related to black in relax-requirements
added phase.
[native-inputs]: Remove python-black.
* gnu/packages/finance.scm (python-trezor)[native-inputs]: Remove
python-black.
* gnu/packages/graph.scm (python-graphtools)[native-inputs]: Remove
python-black.
* gnu/packages/machine-learning.scm (python-funsor,
python-imbalanced-learn, python-hyperopt, python-captum,
python-pyro-ppl)[native-inputs]: Remove python-black.
* gnu/packages/python-check.scm (python-vcrpy)[native-inputs]:
Remove python-black.
* gnu/packages/python-web.scm (python-ovh, python-openai,
python-starsessions-for-pytorch-lightning)[native-inputs]: Remove
python-black.
* gnu/packages/python-xyz.scm (python-pydantic-cli, python-imageio,
python-update-checker, python-eliot, python-minikanren,
python-jupytext)[native-inputs]: Remove python-black.
(ptpython)[propagated-inputs]: Remove python-black.
* gnu/packages/virtualization.scm (python-transient)[native-inputs]:
Remove python-black.
Change-Id: Ie8098afda264bf9a5ab2cfe5d915bc7a41fdc604
---
gnu/packages/bioinformatics.scm | 11 +++--------
gnu/packages/databases.scm | 8 ++------
gnu/packages/finance.scm | 1 -
gnu/packages/graph.scm | 1 -
gnu/packages/machine-learning.scm | 11 +++--------
gnu/packages/python-check.scm | 3 +--
gnu/packages/python-web.scm | 8 +++-----
gnu/packages/python-xyz.scm | 15 +++++----------
gnu/packages/virtualization.scm | 3 +--
9 files changed, 18 insertions(+), 43 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d4a39fd3e1a..adeb7b1c3be 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2152,8 +2152,7 @@ (define-public python-doubletdetection
python-scipy
python-tqdm))
(native-inputs
- (list python-black
- python-flake8
+ (list python-flake8
python-poetry-core
python-pytest))
(home-page "https://github.com/JonathanShor/DoubletDetection")
@@ -2278,10 +2277,7 @@ (define-public python-liana-py
python-tqdm
tzdata))
(native-inputs
- (list python-black
- python-poetry-core
- python-pytest
- python-pytest-cov))
+ (list python-poetry-core python-pytest python-pytest-cov))
(home-page "https://github.com/saezlab/liana-py")
(synopsis "LIANA is a ligand-receptor analysis framework")
(description "This is a Ligand-Receptor inference framework. The
@@ -21838,8 +21834,7 @@ (define-public scvelo
python-umap-learn
pybind11))
(native-inputs
- (list python-black
- python-flake8
+ (list python-flake8
python-hypothesis
python-pytest
python-setuptools-scm
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 67e6ced7c32..96b2c2a0437 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -5537,16 +5537,13 @@ (define-public datasette
" or test_custom_query_with_unicode_characters"
" or test_searchmode)")
"-n" (number->string (parallel-job-count))
- "-m" "not serial") ;cannot run in parallel
+ "-m" "not serial" ;cannot run in parallel
+ "--ignore=tests/test_black.py")
#:phases
#~(modify-phases %standard-phases
(add-after 'unpack 'relax-requirements
(lambda _
- ;; The package needlessly specifies exact versions
- ;; of dependencies, when it works fine with others.
(substitute* "setup.py"
- (("(black)==[0-9\\.]+" _ package)
- package)
(("click-default-group-wheel")
"click-default-group")))))))
(propagated-inputs
@@ -5569,7 +5566,6 @@ (define-public datasette
python-uvicorn))
(native-inputs
(list python-beautifulsoup4
- python-black
python-cogapp
python-pip
python-pytest
diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index 3c32a220c4e..7d1efde8187 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -1149,7 +1149,6 @@ (define-public python-trezor
python-typing-extensions))
(native-inputs ; Only needed for running the tests
(list protobuf
- python-black
python-isort
python-pillow
python-protobuf
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index eda8365a424..033027a5aa9 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -476,7 +476,6 @@ (define-public python-graphtools
(native-inputs
(list util-linux ;for lscpu
python-anndata
- python-black
python-coverage
python-coveralls
python-nose
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index d5ce3bfe7de..494d7174859 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -175,8 +175,7 @@ (define-public python-funsor
(propagated-inputs (list python-makefun python-multipledispatch
python-numpy python-opt-einsum
python-typing-extensions))
- (native-inputs (list python-black
- python-flake8
+ (native-inputs (list python-flake8
python-isort
python-nbsphinx
python-pandas
@@ -1923,8 +1922,7 @@ (define-public python-imbalanced-learn
(getcwd)))))))
(propagated-inputs (list python-joblib python-numpy python-scikit-learn
python-scipy python-threadpoolctl))
- (native-inputs (list python-black
- python-flake8
+ (native-inputs (list python-flake8
python-keras
python-mypy
python-pandas
@@ -2359,8 +2357,7 @@ (define-public python-hyperopt
python-six
python-tqdm))
(native-inputs
- (list python-black
- python-nose
+ (list python-nose
python-pymongo
python-pytest
python-wheel))
@@ -4525,7 +4522,6 @@ (define-public python-captum
(list python-matplotlib python-numpy python-pytorch python-tqdm))
(native-inputs (list jupyter
python-annoy
- python-black
python-flake8
python-flask
python-flask-compress
@@ -5064,7 +5060,6 @@ (define-public python-pyro-ppl
(native-inputs
(list ninja
jupyter
- python-black
python-flake8
python-graphviz
python-isort
diff --git a/gnu/packages/python-check.scm b/gnu/packages/python-check.scm
index e3f0499fecb..ca87289a1e1 100644
--- a/gnu/packages/python-check.scm
+++ b/gnu/packages/python-check.scm
@@ -411,8 +411,7 @@ (define-public python-vcrpy
(propagated-inputs
(list python-pyyaml python-six python-wrapt python-yarl))
(native-inputs
- (list python-black
- python-coverage
+ (list python-coverage
python-flake8
python-flask
python-httplib2
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index e417fc2bb47..4f5d7baab97 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -977,8 +977,7 @@ (define-public python-ovh
(build-system pyproject-build-system)
(arguments (list #:tests? #f)) ; XXX: tests require networking
(propagated-inputs (list python-requests))
- (native-inputs (list python-black
- python-coverage
+ (native-inputs (list python-coverage
python-flake8
python-isort
python-pytest
@@ -2171,7 +2170,7 @@ (define-public python-openai
and not test_file_cli")))
(propagated-inputs (list python-aiohttp python-requests python-tqdm
python-typing-extensions))
- (native-inputs (list python-black python-pytest python-pytest-asyncio
+ (native-inputs (list python-pytest python-pytest-asyncio
python-pytest-mock python-setuptools python-wheel))
(home-page "https://github.com/openai/openai-python")
(synopsis "Python client library for the OpenAI API")
@@ -8974,8 +8973,7 @@ (define-public python-starsessions-for-pytorch-lightning
python-itsdangerous
python-starlette-for-fastapi-0.88))
(native-inputs
- (list python-black
- python-flake8
+ (list python-flake8
python-httpx
python-mypy
python-poetry-core
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index d81de891c4f..0388cefee4c 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -478,7 +478,6 @@ (define-public python-jupytext
(native-inputs
(list git-minimal
python-autopep8
- python-black
python-flake8
python-gitpython
python-isort
@@ -8029,8 +8028,7 @@ (define-public python-pydantic-cli
(propagated-inputs
(list python-pydantic))
(native-inputs
- (list python-black
- python-mypy
+ (list python-mypy
python-pytest))
(home-page "https://github.com/mpkocher/pydantic-cli")
(synopsis "Turn Pydantic defined data models into CLI tools")
@@ -10812,7 +10810,7 @@ (define-public python-imageio
(propagated-inputs
(list python-imageio-ffmpeg python-numpy python-pillow python-tifffile python-setuptools))
(native-inputs
- (list python-black python-flake8 python-fsspec python-pytest
+ (list python-flake8 python-fsspec python-pytest
python-pytest-cov python-wheel))
(home-page "https://imageio.github.io/")
(synopsis "Library for reading and writing a wide range of image data")
@@ -22112,8 +22110,7 @@ (define-public ptpython
(arguments
`(#:tests? #f)) ;there are no tests
(propagated-inputs
- (list python-appdirs python-black python-jedi python-prompt-toolkit
- python-pygments))
+ (list python-appdirs python-jedi python-prompt-toolkit python-pygments))
(home-page "https://github.com/jonathanslenders/ptpython")
(synopsis "Python Read-Eval-Print-Loop with nice IDE-like features")
(description
@@ -27295,7 +27292,7 @@ (define-public python-update-checker
(base32 "04yb5a9mi45ax50m2m0ih6gdvkk1j7gfmy83dd58i1f59axlabba"))))
(build-system python-build-system)
(propagated-inputs (list python-requests))
- (native-inputs (list python-black python-flake8 python-pytest))
+ (native-inputs (list python-flake8 python-pytest))
(home-page "https://github.com/bboe/update_checker")
(synopsis "Python module that will check for package updates")
(description "This package provides a Python module that will check for
@@ -31409,8 +31406,7 @@ (define-public python-eliot
(list python-boltons python-pyrsistent python-six
python-zope-interface))
(native-inputs
- (list python-black
- python-coverage
+ (list python-coverage
python-dask
python-flake8
python-hypothesis
@@ -34165,7 +34161,6 @@ (define-public python-minikanren
python-pytest
python-pytest-cov
python-pylint
- python-black
python-sympy
python-versioneer
python-coverage))
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index 6d28b32c863..85ad5031059 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -2809,8 +2809,7 @@ (define-public python-transient
python-requests
python-toml))
(native-inputs
- (list python-black
- python-mypy
+ (list python-mypy
python-pyhamcrest
python-setuptools
python-twine
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