GNU bug report logs - #70673
[PATCH] gnu: Add python-archspec.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#70673: closed ([PATCH] gnu: Add python-archspec.)
Date: Mon, 06 May 2024 11:05:01 +0000

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Your message dated Mon, 06 May 2024 13:04:04 +0200
with message-id <87pltzjj6j.fsf <at> elephly.net>
and subject line [PATCH] gnu: Add python-archspec.
has caused the debbugs.gnu.org bug report #70673,
regarding [PATCH] gnu: Add python-archspec.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
70673: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=70673
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add python-archspec.
Date: Tue, 30 Apr 2024 14:06:12 +0000

* gnu/packages/bioinformatics.scm (python-archspec): New variable.

Change-Id: Icb15a681d7f339ab25cb0a91feeaacc6a3e8cd6a
---
 gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++
 1 file changed, 50 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index aa6bce5591..437371bf89 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -19504,6 +19504,56 @@ (define-public python-arboreto
 tree-based ensemble regressors.")
     (license license:bsd-3)))
 
+(define-public python-archspec
+  (package
+    (name "python-archspec")
+    (version "0.2.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/archspec/archspec")
+             (commit (string-append "v" version))
+             (recursive? #t)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "03yfn4b9xg41pd7vls2cils77wkkb9si1h2qqvnkds661fdankqj"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases '(modify-phases %standard-phases
+                  ;; Numba needs a writable dir to cache functions.
+                  (add-before 'build 'set-numba-cache-dir
+                    (lambda _
+                      (setenv "NUMBA_CACHE_DIR" "/tmp"))))))
+    (propagated-inputs (list python-boltons
+                             python-cooler
+                             python-ctxcore
+                             python-interlap
+                             python-intervaltree
+                             python-jsonschema
+                             python-networkx
+                             python-numba
+                             python-poetry-core
+                             pyscenic
+                             python-scikit-learn
+                             python-tables
+                             python-typing-extensions))
+    (native-inputs (list python-black
+                         python-flake8
+                         python-isort
+                         python-poetry-core
+                         python-pylint
+                         python-pytest
+                         python-pytest-cov))
+    (home-page "https://github.com/archspec/archspec")
+    (synopsis "Library to query system architecture")
+    (description
+     "Archspec offers human-readable labels for system architecture aspects.
+These aspects include CPU, network fabrics, etc.  In addition, it offers
+APIs to detect, query, and compare them.")
+    (license license:expat)))
+
 (define-public pyscenic
   ;; Latest commit from the update-pyarrow branch
   (let ((commit "5f170fdf474548c37ab381d1849c662820d658ee")

base-commit: df3d30819e650a490ef39dd6692740bb13263c75
-- 
2.34.1

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: 70673-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add python-archspec.
Date: Mon, 06 May 2024 13:04:04 +0200

Applied, but moved to a different location because it is unrelated to
bioinformatics.

Thanks!

-- 
Ricardo

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