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Date: Tue, 30 Apr 2024 14:06:12 +0000 Message-ID: <0c93cb41c25fe436646a1cb8db09d248fee5dc49.1714485972.git.navid.afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28354.000 X-TM-AS-Result: No-10--5.481900-5.000000 X-TMASE-MatchedRID: HRm6PbbemxdYhP20o6vOMFY9XYa1m8xAJ3y+iqiko29rIVA3IGfCC6DE DQa+uiKUQpP6/vBOuJPABo6AR1sb2oqKGmXzWdcHju2XlcEx9HQGj5QT3EuXhtVwVFL7iTibnHm v6Wrwqs7Uky0capLnBD0O47M2EqCeSdDo6TJlMcpXy6+T3d/tR69JSkXsXWchAtvBVlY5IRceCI eEUj1PHeU4eQhPFnLMPMQIb5E6FV7eEYVcHMy5kRqsS/8jaA/KXAnTnuWOS2YYm4kJO8JPidFJv I9LYcV32QAtIlvtIy3VbD4fZmURJBRnDNgrhwJV4IA6FeJP56kbHqcrXboEZ9JrwH7mKTtS X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.481900-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28354.000 X-TM-SNTS-SMTP: 03989B9B3604C8CBF996A85C8461CE1A3898348F851F8E0B904D470FAFAD37892000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: nafkhamdc X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (python-archspec): New variable. Change-Id: Icb15a681d7f339ab25cb0a91feeaacc6a3e8cd6a --- gnu/packages/bioinformatics.scm | 50 +++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa6bce5591..437371bf89 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -19504,6 +19504,56 @@ (define-public python-arboreto tree-based ensemble regressors.") (license license:bsd-3))) +(define-public python-archspec + (package + (name "python-archspec") + (version "0.2.3") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/archspec/archspec") + (commit (string-append "v" version)) + (recursive? #t))) + (file-name (git-file-name name version)) + (sha256 + (base32 "03yfn4b9xg41pd7vls2cils77wkkb9si1h2qqvnkds661fdankqj")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases '(modify-phases %standard-phases + ;; Numba needs a writable dir to cache functions. + (add-before 'build 'set-numba-cache-dir + (lambda _ + (setenv "NUMBA_CACHE_DIR" "/tmp")))))) + (propagated-inputs (list python-boltons + python-cooler + python-ctxcore + python-interlap + python-intervaltree + python-jsonschema + python-networkx + python-numba + python-poetry-core + pyscenic + python-scikit-learn + python-tables + python-typing-extensions)) + (native-inputs (list python-black + python-flake8 + python-isort + python-poetry-core + python-pylint + python-pytest + python-pytest-cov)) + (home-page "https://github.com/archspec/archspec") + (synopsis "Library to query system architecture") + (description + "Archspec offers human-readable labels for system architecture aspects. +These aspects include CPU, network fabrics, etc. In addition, it offers +APIs to detect, query, and compare them.") + (license license:expat))) + (define-public pyscenic ;; Latest commit from the update-pyarrow branch (let ((commit "5f170fdf474548c37ab381d1849c662820d658ee") base-commit: df3d30819e650a490ef39dd6692740bb13263c75 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Mon May 06 07:04:37 2024 Received: (at 70673-done) by debbugs.gnu.org; 6 May 2024 11:04:38 +0000 Received: from localhost ([127.0.0.1]:37300 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3w97-0008E6-Jf for submit@debbugs.gnu.org; Mon, 06 May 2024 07:04:37 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21167) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3w95-0008E0-6Z for 70673-done@debbugs.gnu.org; Mon, 06 May 2024 07:04:36 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1714993447; cv=none; d=zohomail.com; s=zohoarc; b=O+jgefV5itXCn3sPpZ+iptRwobPcvchVySXo3AyUrd5brPL+QcO2RChCPbmbmqxf1RNOTYwrTz0bKYGSjNnKpESut1aF36yaRSyiqIqltMx2C5XtIaArI36LjLOROfxh23yHnpjdF/QKDPjkktLZ+tPYmpV84LKFh9hdpAlNGBo= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1714993447; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=dcxp5ynqCc5g0yGbC5V8ZpYtbpbU2EpatzInaYqLS5M=; b=X2BAZL7CBK6QnBcelZdchStV3HsDRoY8JuWAx7ipNKfiHydCrk3pGMQuVQc6z3w/tRWHv8fCfSsgETb8zk5sT1VI1n5ukJnLakPsZvyJBs9yAQYQqmUofA4nkZq7zYI5y0vDTo2rTotzOZLS3gA2PzT8jSnd08iA9BJn8sOrMrY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1714993447; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=dcxp5ynqCc5g0yGbC5V8ZpYtbpbU2EpatzInaYqLS5M=; b=TBFkqGbE/OPfSUDY7LtMPqXWpmvL8mA1uzhEP4CSI7o0WtnNYx0JCd9YgnYeSbtN 3LRoVdkna4i4450qKGOWuxXQBANbHhqWMM9d6q/HM+ZachFbXcZlhDVP41c8y9ohq5Q 0PlhgvTFnJLuWZ92TGWAwSQby4KstEl9DnftVeFs= Received: by mx.zohomail.com with SMTPS id 1714993447008976.5728106910188; Mon, 6 May 2024 04:04:07 -0700 (PDT) From: Ricardo Wurmus To: 70673-done@debbugs.gnu.org Subject: [PATCH] gnu: Add python-archspec. User-Agent: mu4e 1.12.4; emacs 29.3 Date: Mon, 06 May 2024 13:04:04 +0200 Message-ID: <87pltzjj6j.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 70673-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, but moved to a different location because it is unrelated to bioinformatics. Thanks! -- Ricardo From unknown Sat Aug 09 01:33:31 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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