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Reply-To: bug#70595 <70595@debbugs.gnu.org> Date: Sat, 16 Aug 2025 04:24:10 +0000 retitle 70595 [PATCH] gnu: Add python-pyahocorasick. reassign 70595 guix-patches submitter 70595 nafkhamdc severity 70595 normal tag 70595 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Apr 26 12:09:59 2024 Received: (at submit) by debbugs.gnu.org; 26 Apr 2024 16:09:59 +0000 Received: from localhost ([127.0.0.1]:38261 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s0O99-00082D-1O for submit@debbugs.gnu.org; Fri, 26 Apr 2024 12:09:59 -0400 Received: from lists.gnu.org ([2001:470:142::17]:36348) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s0O96-00081G-9b for submit@debbugs.gnu.org; Fri, 26 Apr 2024 12:09:57 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1s0O8e-0000Ff-Qg for guix-patches@gnu.org; Fri, 26 Apr 2024 12:09:30 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1s0O8b-0003Ai-DH for guix-patches@gnu.org; Fri, 26 Apr 2024 12:09:28 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1714147752; x=1715962153; bh=7M8bd+yW8cntPgk HwiloZSXIdMkpd14mld/3Q4NHGA8=; b=nK8LVAKSP3shzZ/CFmgR9yeow2mpyfC wRgjhwEgCedXNC/sq4nOJvULrphBVDW0WVQQls1jJGbD+pDh1T6tfqyON9+fq+oZ ej7z+RauGGHBErc8k8JExHOI9gPRCaLQNvsnP4AxnkslTzSkO9IMTc8VzHj7P2w+ ANnLsHRpGn3s= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id A82D730044C for ; Fri, 26 Apr 2024 18:09:12 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Fri, 26 Apr 2024 18:09:12 +0200 From: nafkhamdc To: Subject: [PATCH] gnu: Add python-pyahocorasick. 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Change-Id: I468bed450351b49cf81344a328841cd77f67cb4e --- gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa6bce5591..287dad4326 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6383,6 +6383,29 @@ (define-public python-pyani average nucleotide identity.") (license license:expat))) +(define-public python-pyahocorasick + (package + (name "python-pyahocorasick") + (version "2.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/WojciechMula/pyahocorasick") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1fsnivwcw56q7lwz41c5kbfvxv0v17mmkx43i2a293l49fxj08j8")))) + (build-system pyproject-build-system) + (native-inputs (list python-pytest python-twine python-wheel)) + (home-page "https://github.com/WojciechMula/pyahocorasick") + (synopsis "Library for finding multiple key strings in text") + (description + "Pyahocorasick is a fast, memory-efficient library for multi-pattern string search. +This means that you can find multiple key strings occurrences +at once in some input text.") + (license license:bsd-3))) + (define-public exonerate (package (name "exonerate") base-commit: 9593750698394b6fecd73e7fca00409ea1ffa2e3 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Sun May 05 18:08:41 2024 Received: (at 70595-done) by debbugs.gnu.org; 5 May 2024 22:08:41 +0000 Received: from localhost ([127.0.0.1]:33808 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3k2C-00084E-Nr for submit@debbugs.gnu.org; Sun, 05 May 2024 18:08:40 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21807) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3k28-000842-Ig for 70595-done@debbugs.gnu.org; Sun, 05 May 2024 18:08:39 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1714946890; cv=none; d=zohomail.com; s=zohoarc; b=k8d9FDJyqWUahgECyYUbb0kw4DJf+MICq16gwa9qxuBIkUCPjsd5/wLFlDlY5vdmFeeRSL88WoQgxbm0G66VYwufUSQOpoZIdGSeGpFe0Qa53TK7ep+0b69hSkI2wKI1WYF3MEYJ9nwXuHHM3D98sqekSysExXcoDIle05kIde4= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1714946890; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=Ek6noeYwQvgyN+UREHUn0FbqheIA5xK1ipa6NnT1nLYOO02UUgIjsmoWaYYeYUBEd0VbbizLmIlXWOPq1KVDO4r2uhWjGRWr0b00s4gI+zEuYdggBgXYJSDIbt3Gh0jnUdfpOY9ynLCaa1MXcyYvC4HoRujo8TGUJRyKfXqrbiU= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1714946890; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=cJZLsv3mNqio4S8+kKsc7iZjBFQh/6npdnGpqBWBa5fXfiuXxbcrHAz/qHXW/pgM 2TJUeJ7nsuK/jeB7VziN1LGj8rbKBPXtbKz12RlBivQqyn7DPFIw5K3fGi1EEU9L2+Q S6nyrOEolLA28n7al4E5A6S4Z0lmOnl3q648hHjE= Received: by mx.zohomail.com with SMTPS id 1714946886370787.6362423834374; Sun, 5 May 2024 15:08:06 -0700 (PDT) From: Ricardo Wurmus To: 70595-done@debbugs.gnu.org Subject: [PATCH] gnu: Add python-pyahocorasick. 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