From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 23 09:30:32 2024 Received: (at submit) by debbugs.gnu.org; 23 Apr 2024 13:30:33 +0000 Received: from localhost ([127.0.0.1]:52211 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzGE8-0002X7-1w for submit@debbugs.gnu.org; Tue, 23 Apr 2024 09:30:32 -0400 Received: from lists.gnu.org ([2001:470:142::17]:44640) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzGDz-0002QW-Km for submit@debbugs.gnu.org; Tue, 23 Apr 2024 09:30:23 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rzGDa-00043m-Ac for guix-patches@gnu.org; Tue, 23 Apr 2024 09:29:55 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rzGDX-0003x4-CZ for guix-patches@gnu.org; Tue, 23 Apr 2024 09:29:53 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= mime-version:content-type:content-type:content-language :accept-language:message-id:date:date:subject:subject:from:from :received:received; s=mdc; t=1713878984; x=1715693385; bh=rpykXO ZZ0+LjtbUN2goqaLjZb8GWeRQQKC9zY7+ZDTM=; b=PrIlp3uBj75BtDAT73krrF pcHiv/FduX2z7ULB0LHTlR44auES1e98FF7gmR11WaKoJk0KU3KZ25clBiMS+dq7 1z0RblhvCoKZe1CO4dyC8Y1/vskHLLdkQjXRohjdLHanYfC3TP9daqrFgum1fkY9 wsJ/XzuekOdTidH9cD9YA= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id C2539A02D8 for ; Tue, 23 Apr 2024 15:29:44 +0200 (CEST) Received: from SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 15:29:44 +0200 Received: from SW-IT-P-EX4.mdc-berlin.net ([fe80::a7a6:ed55:a407:e643]) by SW-IT-P-EX4.mdc-berlin.net ([fe80::a7a6:ed55:a407:e643%3]) with mapi id 15.02.1544.004; Tue, 23 Apr 2024 15:29:44 +0200 From: "MadalinIonel.Patrascu@mdc-berlin.de" To: "guix-patches@gnu.org" Subject: [Patch] gnu: Add r-seraster and r-rearrr. Thread-Topic: [Patch] gnu: Add r-seraster and r-rearrr. Thread-Index: AQHalYI4CRN6xiCgLUWoszI8KZ3RYQ== Date: Tue, 23 Apr 2024 13:29:43 +0000 Message-ID: <45f15f5a52814fed81e54bce8b044fbd@mdc-berlin.de> Accept-Language: en-US, de-DE Content-Language: en-US X-MS-Has-Attach: X-MS-TNEF-Correlator: x-originating-ip: [141.80.113.52] x-tm-as-product-ver: SMEX-14.0.0.3152-9.1.2019-28338.007 x-tm-as-result: No-10--2.973200-5.000000 x-tmase-matchedrid: 5V0fm+sVFB3ZmVIfLFnK1Ft1REfIxIf4sJRTReM07cw2GdmZM3HbIOv6 z0cEnHUdQSU0V5iF0OGOQ4Wb5/9GQqN+RqZu8M+1YTsQp+n72DorGV73AsU0Z+aRO9WDjl4hUOO sc/slMqNEKZlqWQag3oaUa75uJ+6ktAE8i5k9DTewHXnHVkAsxb2XNUZZqZaAzHzLyqhlRFl0u4 JlIzxDtIPdwvC77EKLBaiLynrAGrykl5isTp/0HRLk9u8gkvkaHzWomQ+QAFQVl85AiueK3d8D7 5YypMy95xIprEAT9+0DFjf/llH5q94gEwGNOFKc5I3bpaIOl5pv/0R6/20drQ== x-tm-as-user-approved-sender: Yes x-tm-as-user-blocked-sender: No x-tmase-result: 10--2.973200-5.000000 x-tmase-version: SMEX-14.0.0.3152-9.1.2019-28338.007 x-tm-snts-smtp: 4B6A6533643504D3330ED74BF42E5CBDC89760C186BC349027658E05746B9D282000:F Content-Type: multipart/alternative; boundary="_000_45f15f5a52814fed81e54bce8b044fbdmdcberlinde_" MIME-Version: 1.0 Received-SPF: pass client-ip=194.95.232.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, HTML_MESSAGE=0.001, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) --_000_45f15f5a52814fed81e54bce8b044fbdmdcberlinde_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable * gnu/packages/bioconductor.scm (r-seraster): New variable. * gnu/packages/cran.scm (r-rearrr): New variable. --_000_45f15f5a52814fed81e54bce8b044fbdmdcberlinde_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

* gnu/packages/bioconductor.scm (r-seraster): New variable.

* gnu/packages/cran.scm (r-rearrr): New variable.

--_000_45f15f5a52814fed81e54bce8b044fbdmdcberlinde_-- From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 23 09:33:10 2024 Received: (at 70536) by debbugs.gnu.org; 23 Apr 2024 13:33:11 +0000 Received: from localhost ([127.0.0.1]:52245 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzGGg-0003ol-5p for submit@debbugs.gnu.org; Tue, 23 Apr 2024 09:33:10 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:55779) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzGGW-0003iC-ID for 70536@debbugs.gnu.org; Tue, 23 Apr 2024 09:33:01 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1713879153; x=1715693554; bh=uYatoRF1SuyUaw7 CF+Z7eVTe8UkV/0kriVmbaaZdTc4=; b=JemI0ER4TVs0RpdZpk+FQu+/w4vW71U v0LWQNf/qA4TvgzX7oQ+otcACqwowXakc5/6pZgct5Tvz/V+GAubJXQHefO40iVH MMIAefrQnYuWBSxqPurCySlcpDP12WrgTYGuiugRDbrLY37FjgP77d3QCw8iUKVb 8XqlWNW8OW9U= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 51D81160289 for <70536@debbugs.gnu.org>; Tue, 23 Apr 2024 15:32:33 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 15:32:32 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <70536@debbugs.gnu.org> Subject: [PATCH 1/2] gnu: Add r-rearrr. Date: Tue, 23 Apr 2024 15:32:08 +0200 Message-ID: <023204df1edfba5ec5057df74aaf43b5afca6b14.1713879129.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-Debbugs-Cc: Ricardo Wurmus Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-AS-Result: No-10--7.224300-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJMEZ1mm50iAbnOjEKYddvv63O2+pOfl+vcwLJ9PZUBQhdqK Kei3fK/BuP2uihwIy0iu5Y9WGrdMHhV9IJL+D0rbju2XlcEx9HQIyIQE9neGFVJ0RLdATbnAw5n Zy2X+Nx6yDWuvu/0vCds6SXRh3ngz3hGFXBzMuZEarEv/I2gPylwJ057ljktmDPy/7Hbs0Dg58S arp97J84ckZT5abrxu5V3Z5DLmdVYAnQx6waXV3iAhzPkokBjg/D75VdNO6/dB6BkcOzI7twnSw 2WKje/Q X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--7.224300-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28338.007 X-TM-SNTS-SMTP: 58DD8D14E861FA3E25408729B5EED535D8B40C699E039AF613EBFAC51A926CFF2000:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 70536 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/cran.scm (r-rearrr): New variable. Change-Id: I41e06b24e565a4070f570b7fd5c656f185aacfa9 --- gnu/packages/cran.scm | 29 +++++++++++++++++++++++++++++ 1 file changed, 29 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index ee0aac7f7a..83ba5f2a0d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -4259,6 +4259,35 @@ (define-public r-readxl ;; 'rapidxml' which is Boost. (license (list license:gpl3 license:bsd-2 license:boost1.0)))) +(define-public r-rearrr + (package + (name "r-rearrr") + (version "0.3.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "rearrr" version)) + (sha256 + (base32 "1inx1gikiqxaf6a8g10b02l1qs2y0zxs2yrxn6dyx9n6xlra3rnr")))) + (properties `((upstream-name . "rearrr"))) + (build-system r-build-system) + (propagated-inputs (list r-checkmate + r-dplyr + r-lifecycle + r-plyr + r-purrr + r-r6 + r-rlang + r-tibble)) + (home-page "https://github.com/ludvigolsen/rearrr") + (synopsis "Rearranging data by a set of methods") + (description + "This package arranges data by a set of methods. It uses rearrangers to +reorder data points and mutators to change their values. From basic utilities, +to centering the greatest value, to swirling in 3-dimensional space, rearrr +enables creativity when plotting and experimenting with data.") + (license license:expat))) + (define-public r-model4you (package (name "r-model4you") base-commit: 2d19e505f6f9f82aebc9ba8c74ba223818acd9bc -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 23 09:33:58 2024 Received: (at 70536) by debbugs.gnu.org; 23 Apr 2024 13:34:00 +0000 Received: from localhost ([127.0.0.1]:52256 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzGHR-00047V-F8 for submit@debbugs.gnu.org; Tue, 23 Apr 2024 09:33:58 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]:60579) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzGGW-0003iM-IC for 70536@debbugs.gnu.org; Tue, 23 Apr 2024 09:33:02 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1713879153; x=1715693554; bh=/Vb5AufowFfcIUaZfNYUAiAuzZ7BJI81n58x3GHXfQI=; b=jlGRpndRczct hx9o8wz7hOv3o5kulyvC1DjWlgW+MfmDabGOBxLXjw22EdwhSZ9I+x9yHx6RKDMz hpzbafQeRK87GFqQ5khWqT2COTgya6jco4yJu6uEkRig5WBv0EqKnytaz67WdY+O 5ruSTq4G45hvhJ/2a2EPbJXsxkhMpqE= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id C356016028D for <70536@debbugs.gnu.org>; Tue, 23 Apr 2024 15:32:33 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 15:32:33 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <70536@debbugs.gnu.org> Subject: [PATCH 2/2] gnu: Add r-seraster. 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Change-Id: I345dcbdfba23b34f122d7c193604cf950fe0d8f0 --- gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++++ 1 file changed, 40 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 0fca094977..828d9cfe36 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -11025,6 +11025,46 @@ (define-public r-seqpattern reference point and sorted by a user defined feature.") (license license:gpl3+))) +;; This is not a Bioconductor package but it depends on three packages. +(define-public r-seraster + ;; There are no tags or releases. + (let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1") + (revision "1")) + (package + (name "r-seraster") + (version (git-version "0.99.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JEFworks-Lab/SEraster") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4")))) + (properties `((upstream-name . "SEraster"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocparallel + r-ggplot2 + r-matrix + r-rearrr + r-sf + r-spatialexperiment + r-summarizedexperiment)) + (home-page "https://github.com/JEFworks-Lab/SEraster") + (synopsis + "Rasterization framework for scalable spatial omics data analysis") + (description "SEraster is a rasterization preprocessing framework that +aggregates cellular information into spatial pixels to reduce resource requirements +for spatial omics data analysis. This package reduces the number of points in +spatial omics datasets for downstream analysis through a process of rasterization +where single cells gene expression or cell-type labels are aggregated into equally +sized pixels based on a user-defined resolution. SEraster can be incorporated +with other packages to conduct downstream analyses for spatial omics datasets, +such as detecting spatially variable genes.") + (license license:gpl3)))) + (define-public r-sesame (package (name "r-sesame") -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 23 10:29:30 2024 Received: (at 70536) by debbugs.gnu.org; 23 Apr 2024 14:29:30 +0000 Received: from localhost ([127.0.0.1]:52553 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzH9E-0006go-Ti for submit@debbugs.gnu.org; Tue, 23 Apr 2024 10:29:30 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:53817) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzH97-0006eD-Nm for 70536@debbugs.gnu.org; Tue, 23 Apr 2024 10:29:26 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1713882537; x=1715696938; bh=JD8kwxifoiOGByt p4M06Jtwa92FIN4za+cIPBs3834A=; b=WpV5nryAZS51mSk/9Fp9GDPTEhC/5xF mt8YFRyllwiGFG2kUHESfnVKLB9fGEJ6RH4n0tliKoNSAfMssgzIDPBv7BFJ5PPj ETl1/GiwrCZ8Zxi8wny1YEbGzVEN92iAkbBmylC4eQWai7+RZYJf4MQemBbhNLR5 iSf8NZ0sZANQ= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id C7420300337 for <70536@debbugs.gnu.org>; Tue, 23 Apr 2024 16:28:57 +0200 (CEST) Received: from cl-akalin11.mdc-berlin.net (141.80.219.20) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1544.4; Tue, 23 Apr 2024 16:28:57 +0200 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: <70536@debbugs.gnu.org> Subject: [PATCH 2/2] v2 gnu: Add r-seraster. Date: Tue, 23 Apr 2024 16:23:05 +0200 Message-ID: <79ede4754c5753d845573ed8b4c09e8f44ce00c1.1713882185.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.219.20] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.2019-28340.000 X-TM-AS-Result: No-10--8.763400-5.000000 X-TMASE-MatchedRID: NGDYxnKYxb1YhP20o6vOMFY9XYa1m8xAJ3y+iqiko29rIVA3IGfCC6DE DQa+uiKUQpP6/vBOuJNtZNqs6iorqZPYr058DwvmLEZ+ACaG5U3Y2awIDlDmujC402g4LjYvBt2 mn8pk+2XW+ICLsjZ4LSgsp7v1bEBIAxd0/lN2uERSKsXuA7t++a/SfopHFbLoQGE06sEV0F3XU0 yDcNPb9GJDxQXtq4p0kyH4H1Y9ZQPwKwep2yrWF9h5c4TN8zbZXO2SJ/uvWJVyKUQT4+N7z1XOq MYNeYhmtsl1cesvX38i/Yc9KxJBdbaZQSLjCyCbWFwkum4gdCFfIlGWURdi/A== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.763400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.2019-28340.000 X-TM-SNTS-SMTP: 3D5004B9D9E441B03697279F9997351D2B52746DFA67B17056098D73BFA1D2002000:F X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 70536 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioinformatics.scm (r-seraster): New variable. Change-Id: I9f9fd24a9aa563f7c74154e613b85dee46bdcf79 --- gnu/packages/bioinformatics.scm | 39 +++++++++++++++++++++++++++++++++ 1 file changed, 39 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index aa6bce5591..514d01c87f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13159,6 +13159,45 @@ (define-public r-seqgl factors bound at the specific regions.") (license license:gpl2+))) +(define-public r-seraster + ;; There are no tags or releases. + (let ((commit "4fdc1ffe5d3feb65de9880329d221cf276b393a1") + (revision "1")) + (package + (name "r-seraster") + (version (git-version "0.99.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JEFworks-Lab/SEraster") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0y33lk8q0h9nfzmf7slxxvw3l0djassp4l63nsjpm3p6z4pah5s4")))) + (properties `((upstream-name . "SEraster"))) + (build-system r-build-system) + (propagated-inputs (list r-biocparallel + r-ggplot2 + r-matrix + r-rearrr + r-sf + r-spatialexperiment + r-summarizedexperiment)) + (home-page "https://github.com/JEFworks-Lab/SEraster") + (synopsis + "Rasterization framework for scalable spatial omics data analysis") + (description + "This package is a rasterization preprocessing framework that aggregates +cellular information into spatial pixels to reduce resource requirements for +spatial omics data analysis. SEraster reduces the number of points in spatial +omics datasets for downstream analysis through a process of rasterization where +single cells gene expression or cell-type labels are aggregated into equally +sized pixels based on a user-defined resolution. SEraster can be incorporated +with other packages to conduct downstream analyses for spatial omics datasets, +such as detecting spatially variable genes.") + (license license:gpl3)))) + (define-public emboss (package (name "emboss") base-commit: 2d19e505f6f9f82aebc9ba8c74ba223818acd9bc -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Tue Apr 23 17:44:41 2024 Received: (at 70536) by debbugs.gnu.org; 23 Apr 2024 21:44:42 +0000 Received: from localhost ([127.0.0.1]:54529 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzNwO-0004Jb-TK for submit@debbugs.gnu.org; Tue, 23 Apr 2024 17:44:41 -0400 Received: from [195.15.247.228] (port=15864 helo=rdmp.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rzNwL-0004I9-IJ for 70536@debbugs.gnu.org; Tue, 23 Apr 2024 17:44:38 -0400 Received: from [127.0.0.1] (helo=[IPv6:::1]) by rdmp.org with esmtp (Exim 4.96.1) (envelope-from ) id 1rzNvy-0004XF-39 for 70536@debbugs.gnu.org; Tue, 23 Apr 2024 21:44:15 +0000 Message-ID: <0248f5c9814df2ba8ad85286a251a1c2e314c442.camel@rdmp.org> Subject: [PATCH 0/2] gnu: Add r-seraster and r-rearrr. From: Dale Mellor To: 70536@debbugs.gnu.org Date: Tue, 23 Apr 2024 22:44:14 +0100 Organization: DM Bespoke Computer Solutions Ltd Content-Type: text/plain Content-Transfer-Encoding: 7bit User-Agent: Evolution 3.48.4 MIME-Version: 1.0 X-Spam-Score: 1.3 (+) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: This is needed to put a title in qa.guix.gnu.org/patches. 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From debbugs-submit-bounces@debbugs.gnu.org Mon May 06 05:46:07 2024 Received: (at 70536-done) by debbugs.gnu.org; 6 May 2024 09:46:07 +0000 Received: from localhost ([127.0.0.1]:36887 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3uv8-0007PV-Sy for submit@debbugs.gnu.org; Mon, 06 May 2024 05:46:07 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21810) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1s3uv6-0007PN-DN for 70536-done@debbugs.gnu.org; Mon, 06 May 2024 05:46:05 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1714988736; cv=none; d=zohomail.com; s=zohoarc; b=GXeRiFEuL1s65Bxw5gGfEOVWDOmAYKpPOMncgUWAfpN2rI8CYnJVOklw5iaE58OKsISP0tF7wF1OWvM+Wz/lZbrLN0lsv8I/vgGWuhKLL2RwQNqXZ/DEsTpXIxdCFOwllpBGSqAePFgfgkpmMSSzGHWKsymHouqfQQdcIT6kZ78= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1714988736; h=Content-Type:Cc:Cc:Date:Date:From:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:Subject:To:To:Message-Id:Reply-To; bh=SBr1X7AQuamaKnj66wFy8KYKX7ps7G0u8Oe2Na2toLI=; b=E/cQSVFKwffDWGZ9eRTOwl9s6bwtHSdShW/a8nv16AoXu5G5YtMwLa41OniSc2A/ptSmMaOs4BwS10WPBKRoATimYJf5FQzvCLtkd/c3l4YpPaq8F7ic9GmYrgOyNyIMRHhV+dYnaDBI/yMbp5tvc+eC0UOtw3lepBB0KGeV1y4= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1714988736; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Cc:Cc:Subject:Subject:In-Reply-To:References:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To; bh=SBr1X7AQuamaKnj66wFy8KYKX7ps7G0u8Oe2Na2toLI=; b=BOq6I33w9UdVNhTKs7WjRDwjFn07jNnw7KCFADgp96vYJxgduGs3fry/ivz6iSp0 Tw/Ek0HG8ypQUFBIlL5ZJM/Wq+sNDL0HA+CEBAaXLF5sCiQX2yF4UXpgxOS1I935dqc ym5Aohop1zwNB+4braeJmY+etyzgvxj01ON9CbQQ= Received: by mx.zohomail.com with SMTPS id 1714988735607917.5529599653713; Mon, 6 May 2024 02:45:35 -0700 (PDT) From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#70536] [PATCH 1/2] gnu: Add r-rearrr. In-Reply-To: <023204df1edfba5ec5057df74aaf43b5afca6b14.1713879129.git.madalinionel.patrascu@mdc-berlin.de> (=?utf-8?B?Ik3Eg2TEg2xpbg==?= Ionel =?utf-8?Q?Patra=C8=99cu=22's?= message of "Tue, 23 Apr 2024 15:32:08 +0200") References: <45f15f5a52814fed81e54bce8b044fbd@mdc-berlin.de> <023204df1edfba5ec5057df74aaf43b5afca6b14.1713879129.git.madalinionel.patrascu@mdc-berlin.de> User-Agent: mu4e 1.12.4; emacs 29.3 Date: Mon, 06 May 2024 11:45:32 +0200 Message-ID: <877cg7l1dv.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 70536-done Cc: 70536-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches, applied! -- Ricardo From unknown Fri Jun 20 07:21:52 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Mon, 03 Jun 2024 11:24:13 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator