Package: guix;
Reported by: Liliana Marie Prikler <liliana.prikler <at> ist.tugraz.at>
Date: Fri, 12 Apr 2024 09:39:04 UTC
Severity: normal
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bug-guix <at> gnu.org
:bug#70349
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(Fri, 12 Apr 2024 09:39:05 GMT) Full text and rfc822 format available.Liliana Marie Prikler <liliana.prikler <at> ist.tugraz.at>
:bug-guix <at> gnu.org
.
(Fri, 12 Apr 2024 09:39:05 GMT) Full text and rfc822 format available.Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):
From: Liliana Marie Prikler <liliana.prikler <at> ist.tugraz.at> To: bug-guix <at> gnu.org Subject: Clang fails to communicate RUNPATH? Date: Fri, 12 Apr 2024 11:36:50 +0200
[Message part 1 (text/plain, inline)]
Hi Guix, I've noticed a strange error when attempting to build my software against clang-toolchain. I've attached a minimally breaking example, but the gist of it is that RUNPATH validation fails as shown below. starting phase `validate-runpath' validating RUNPATH of 1 binaries in "/gnu/store/sd1zjjf13mi448qbqaphhcvf9ap5jxji-why-hello-0/bin"... /gnu/store/sd1zjjf13mi448qbqaphhcvf9ap5jxji-why-hello-0/bin/hello: error: depends on 'libfmt.so.9', which cannot be found in RUNPATH ("/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib") Is this expected? I know that the -for-system have historically disregarded the existence of clang-toolchain and hence led to issues, but I think this is something else… Cheers
[why-hello.scm (text/x-scheme, attachment)]
bug-guix <at> gnu.org
:bug#70349
; Package guix
.
(Sat, 25 May 2024 09:28:01 GMT) Full text and rfc822 format available.Message #8 received at 70349 <at> debbugs.gnu.org (full text, mbox):
From: Ludovic Courtès <ludo <at> gnu.org> To: Liliana Marie Prikler <liliana.prikler <at> ist.tugraz.at> Cc: 70349 <at> debbugs.gnu.org Subject: Re: bug#70349: Clang fails to communicate RUNPATH? Date: Sat, 25 May 2024 11:26:42 +0200
Hi Liliana, Liliana Marie Prikler <liliana.prikler <at> ist.tugraz.at> skribis: > I've noticed a strange error when attempting to build my software > against clang-toolchain. I've attached a minimally breaking example, > but the gist of it is that RUNPATH validation fails as shown below. > > starting phase `validate-runpath' > validating RUNPATH of 1 binaries in > "/gnu/store/sd1zjjf13mi448qbqaphhcvf9ap5jxji-why-hello-0/bin"... > /gnu/store/sd1zjjf13mi448qbqaphhcvf9ap5jxji-why-hello-0/bin/hello: > error: depends on 'libfmt.so.9', which cannot be found in RUNPATH > ("/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib") > > Is this expected? I know that the -for-system have historically > disregarded the existence of clang-toolchain and hence led to issues, > but I think this is something else… Could this be an issue specific to ‘meson-build-system’? For instance, this works fine (both mpfr and mpc use ‘gnu-build-system’): guix build mpc --with-c-toolchain=mpfr=clang-toolchain If we add this to the example you posted: (arguments (list #:phases #~(modify-phases %standard-phases (add-after 'unpack 'debug-ld-wrapper (lambda _ (setenv "GUIX_LD_WRAPPER_DEBUG" "yes")))))) … we see: --8<---------------cut here---------------start------------->8--- ld-wrapper: library search path: ("/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." "/gnu/store/inpy5mz35fwvclynpag5gsp6d1hflfsz-meson-1.1.0/lib" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" "/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/lib" "/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/lib" "/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/lib" "/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/lib" "/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib" "/gnu/store/0irvg0gvvfwagdjckigvr4g8xap94y1j-clang-toolchain-18.1.5/lib") ld-wrapper: libraries linked: ("/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib/libfmt.so" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../../libstdc++.so" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/libm.so" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../../libgcc_s.so" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/libc.so" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../../libgcc_s.so") ld-wrapper: invoking `/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m-binutils-2.38/bin/ld' with ("--eh-frame-hdr" "-m" "elf_x86_64" "-pie" "-dynamic-linker" "//gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/ld-linux-x86-64.so.2" "-o" "hello" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/Scrt1.o" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/crti.o" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/crtbeginS.o" "-L/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0" "-L/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" "-L/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." "-L/gnu/store/inpy5mz35fwvclynpag5gsp6d1hflfsz-meson-1.1.0/lib" "-L/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" "-L/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/lib" "-L/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/lib" "-L/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/lib" "-L/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/lib" "-L/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales-2.35/lib" "-L/gnu/store/0irvg0gvvfwagdjckigvr4g8xap94y1j-clang-toolchain-18.1.5/lib" "hello.p/hello.cpp.o" "--as-needed" "--no-undefined" "-rpath=/gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/lib" "-rpath" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" "-rpath-link" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" "--start-group" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib/libfmt.so" "--end-group" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/crtendS.o" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/crtn.o" "-rpath" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" "-rpath" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." "-rpath" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" "-rpath" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." "-rpath" "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" "-rpath" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../..") […] starting phase `shrink-runpath' /gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/bin/hello: stripping RUNPATH to ("/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib") (removed ("/gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/lib" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../..")) phase `shrink-runpath' succeeded after 0.0 seconds starting phase `validate-runpath' validating RUNPATH of 1 binaries in "/gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/bin"... /gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/bin/hello: error: depends on 'libfmt.so.9', which cannot be found in RUNPATH ("/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib") --8<---------------cut here---------------end--------------->8--- So the ‘ld’ wrapper is indeed passing ‘-rpath /path/to/fmt’ but down the road that gets lost. Could it be that Meson removes it when it install files? Ludo’.
bug-guix <at> gnu.org
:bug#70349
; Package guix
.
(Mon, 27 May 2024 06:50:02 GMT) Full text and rfc822 format available.Message #11 received at 70349 <at> debbugs.gnu.org (full text, mbox):
From: Liliana Marie Prikler <liliana.prikler <at> ist.tugraz.at> To: Ludovic Courtès <ludo <at> gnu.org> Cc: 70349 <at> debbugs.gnu.org Subject: Re: bug#70349: Clang fails to communicate RUNPATH? Date: Mon, 27 May 2024 08:49:06 +0200
Hi Ludo, Am Samstag, dem 25.05.2024 um 11:26 +0200 schrieb Ludovic Courtès: > Could this be an issue specific to ‘meson-build-system’? > > For instance, this works fine (both mpfr and mpc use > ‘gnu-build-system’): > > guix build mpc --with-c-toolchain=mpfr=clang-toolchain > > If we add this to the example you posted: > > (arguments > (list #:phases #~(modify-phases %standard-phases > (add-after 'unpack 'debug-ld-wrapper > (lambda _ > (setenv "GUIX_LD_WRAPPER_DEBUG" > "yes")))))) > > … we see: > > --8<---------------cut here---------------start------------->8--- > ld-wrapper: library search path: > ("/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" > "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." > "/gnu/store/inpy5mz35fwvclynpag5gsp6d1hflfsz-meson-1.1.0/lib" > "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" > "/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/lib" > "/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/lib" > "/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/lib" > "/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/lib" > "/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales- > 2.35/lib" "/gnu/store/0irvg0gvvfwagdjckigvr4g8xap94y1j-clang- > toolchain-18.1.5/lib") > ld-wrapper: libraries linked: > ("/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt- > 9.1.0/lib/libfmt.so" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs- > gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux- > gnu/11.3.0/../../../libstdc++.so" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/libm.so" > "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../../libgcc_s.so" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/libc.so" > "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../../libgcc_s.so") > ld-wrapper: invoking `/gnu/store/zh4x65snfis7svs6906gj1z8i7dx2j3m- > binutils-2.38/bin/ld' with ("--eh-frame-hdr" "-m" "elf_x86_64" "-pie" > "-dynamic-linker" "//gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3- > glibc-2.35/lib/ld-linux-x86-64.so.2" "-o" "hello" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/Scrt1.o" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/crti.o" > "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/crtbeginS.o" "- > L/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0" "- > L/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" "- > L/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." "- > L/gnu/store/inpy5mz35fwvclynpag5gsp6d1hflfsz-meson-1.1.0/lib" "- > L/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" "- > L/gnu/store/j8wlfmlmfvpbza6is9wv9xsd8psrxn00-bzip2-1.0.8/lib" "- > L/gnu/store/gr0sy0m1mv36qv54idm6cn10l3mngshq-file-5.44/lib" "- > L/gnu/store/hc05d76f1j3iz3v2bs5jz4fpljl1r4dj-gawk-5.2.1/lib" "- > L/gnu/store/6k1yys9wqrfn4y41ic1win8gpnimncwj-xz-5.2.8/lib" "- > L/gnu/store/visfdda934gvivwihwhlm63fdqhhcc8a-glibc-utf8-locales- > 2.35/lib" "-L/gnu/store/0irvg0gvvfwagdjckigvr4g8xap94y1j-clang- > toolchain-18.1.5/lib" "hello.p/hello.cpp.o" "--as-needed" "--no- > undefined" "-rpath=/gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why- > hello-0/lib" "-rpath" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0- > fmt-9.1.0/lib" "-rpath-link" > "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" "--start- > group" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt- > 9.1.0/lib/libfmt.so" "--end-group" "-lstdc++" "-lm" "-lgcc_s" "-lgcc" > "-lc" "-lgcc_s" "-lgcc" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs- > gcc-11.3.0-lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/crtendS.o" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib/crtn.o" > "-rpath" "/gnu/store/qhz8n6mxzalifcrml6fwsvnxw92bk7n0-fmt-9.1.0/lib" > "-rpath" "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." "-rpath" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" "-rpath" > "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../.." "-rpath" > "/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib" "-rpath" > "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../..") > > […] > > starting phase `shrink-runpath' > /gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/bin/hello: > stripping RUNPATH to ("/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3- > glibc-2.35/lib") (removed > ("/gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/lib" > "/gnu/store/l684qgqlrqkbsh8jffp9d8ag6vrpcwgs-gcc-11.3.0- > lib/lib/gcc/x86_64-unknown-linux-gnu/11.3.0/../../..")) > phase `shrink-runpath' succeeded after 0.0 seconds > starting phase `validate-runpath' > validating RUNPATH of 1 binaries in > "/gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/bin"... > /gnu/store/g9wxj9a27jhnxa40zafh0ff33dd8906y-why-hello-0/bin/hello: > error: depends on 'libfmt.so.9', which cannot be found in RUNPATH > ("/gnu/store/gsjczqir1wbz8p770zndrpw4rnppmxi3-glibc-2.35/lib") > --8<---------------cut here---------------end--------------->8--- > > So the ‘ld’ wrapper is indeed passing ‘-rpath /path/to/fmt’ but down > the road that gets lost. Could it be that Meson removes it when it > install files? So it seems. I retried this in a `guix shell`, and: --8<---------------cut here---------------start------------->8--- $ ldd build/hello linux-vdso.so.1 (0x00007fffd54f9000) libfmt.so.10 => /gnu/store/cn0vmkz3h0wz0wz6hbdnjv4zphzr8z06- fmt-10.2.1/lib/libfmt.so.10 (0x00007fecae2e1000) libc.so.6 => /gnu/store/ln6hxqjvz6m9gdd9s97pivlqck7hzs99- glibc-2.35/lib/libc.so.6 (0x00007fecae0e5000) libstdc++.so.6 => /gnu/store/6ncav55lbk5kqvwwflrzcr41hp5jbq0c- gcc-11.3.0-lib/lib/libstdc++.so.6 (0x00007fecade00000) libm.so.6 => /gnu/store/ln6hxqjvz6m9gdd9s97pivlqck7hzs99- glibc-2.35/lib/libm.so.6 (0x00007fecadd23000) libgcc_s.so.1 => /gnu/store/6ncav55lbk5kqvwwflrzcr41hp5jbq0c- gcc-11.3.0-lib/lib/libgcc_s.so.1 (0x00007fecae0c9000) //gnu/store/ln6hxqjvz6m9gdd9s97pivlqck7hzs99-glibc- 2.35/lib/ld-linux-x86-64.so.2 => /gnu/store/daas786mm1zi3kxp03640n6anhrlrcng-glibc-2.35/lib/ld-linux- x86-64.so.2 (0x00007fecae30b000) --8<---------------cut here---------------end--------------->8-- but after installing --8<---------------cut here---------------start------------->8--- $ ldd build/.install/bin/hello linux-vdso.so.1 (0x00007fffbc269000) libfmt.so.10 => not found libc.so.6 => /gnu/store/ln6hxqjvz6m9gdd9s97pivlqck7hzs99- glibc-2.35/lib/libc.so.6 (0x00007fae94274000) //gnu/store/ln6hxqjvz6m9gdd9s97pivlqck7hzs99-glibc- 2.35/lib/ld-linux-x86-64.so.2 => /gnu/store/daas786mm1zi3kxp03640n6anhrlrcng-glibc-2.35/lib/ld-linux- x86-64.so.2 (0x00007fae94477000) --8<---------------cut here---------------end--------------->8-- If I recall correctly, Meson performs separate linking on install, so that certain stuff works from the build directory without resorting to `./pre-inst-env` or the like.¹ However, why does it not find libfmt.so when using Clang, but does find it when using GCC? Does our clang- toolchain prepare the correct wrapper? I feel like lld might be hidden and unpatched in there – or something else weird is happening. Cheers ¹ I actually can't support this claim, as the GUIX_LD_WRAPPER_DEBUG only shows up on build as expected even with the gcc-toolchain variant.
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