GNU bug report logs - #70031
[core-updates PATCH 00/19] Use CMake in build-system/cmake.

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Message #254 received at 70031 <at> debbugs.gnu.org (full text, mbox):

From: Greg Hogan <code <at> greghogan.com>
To: 70031 <at> debbugs.gnu.org
Cc: Greg Hogan <code <at> greghogan.com>
Subject: [PATCH v2 62/65] gnu: trinityrnaseq: Pin CMake dependency.
Date: Tue, 22 Oct 2024 18:09:52 +0000

* gnu/packages/bioinformatics.scm (trinityrnaseq)
[native-inputs]: Change cmake to cmake-minimal.
[arguments]<#:phases>[install]: Remove deletion of uncreated files.
---
 gnu/packages/bioinformatics.scm | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d167a11ba1..c7a3517e0c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6067,8 +6067,6 @@ (define-public trinityrnaseq
                     (bin   (string-append #$output "/bin/")))
                 (mkdir-p bin)
                 (copy-recursively "." share)
-                (delete-file (string-append share "/Chrysalis/build/CMakeFiles/CMakeOutput.log"))
-                (delete-file (string-append share "/Inchworm/build/CMakeFiles/CMakeOutput.log"))
 
                 (wrap-program (string-append share "Trinity")
                   `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))
@@ -6122,7 +6120,7 @@ (define-public trinityrnaseq
      (list coreutils
            gzip
            which))
-    (native-inputs (list cmake))
+    (native-inputs (list cmake-minimal))
     (home-page "https://github.com/trinityrnaseq/trinityrnaseq/wiki")
     (synopsis "Trinity RNA-Seq de novo transcriptome assembly")
     (description "Trinity assembles transcript sequences from Illumina RNA-Seq
-- 
2.46.1

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