GNU bug report logs - #69736
[PATCH 0/7] Add toil

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From: Arun Isaac <arunisaac <at> systemreboot.net>
To: 69736 <at> debbugs.gnu.org
Cc: Arun Isaac <arunisaac <at> systemreboot.net>, Arun Isaac <arunisaac <at> systemreboot.net>, jgart <jgart <at> dismail.de>
Subject: [bug#69736] [PATCH v2 5/6] gnu: Add python-cwltool.
Date: Wed,  3 Jul 2024 16:07:21 +0100

* gnu/packages/bioinformatics.scm (python-cwltool): New variable.

Change-Id: Ic374d4c02b69c4e6c923d1cc17e629d4a3a6221c
---
 gnu/packages/bioinformatics.scm | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 063017a8aa..b83e18ea78 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5816,6 +5816,18 @@ (define-public cwltool
 CWL descriptions.")
     (license license:asl2.0)))
 
+;; python-toil tightly integrates with cwltool using it as a library. So,
+;; create a library version of cwltool where inputs become propagated inputs.
+(define-public python-cwltool
+  (package
+    (inherit cwltool)
+    (name "python-cwltool")
+    (inputs
+     (list node))
+    (propagated-inputs
+     (modify-inputs (package-inputs cwltool)
+       (delete "node")))))
+
 (define-public python-dendropy
   (package
     (name "python-dendropy")
-- 
2.45.2

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