GNU bug report logs - #69729
[PATCH 00/41] Improve performance in lapack dependent packages.

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Message #86 received at 69729 <at> debbugs.gnu.org (full text, mbox):

From: Romain GARBAGE <romain.garbage <at> inria.fr>
To: 69729 <at> debbugs.gnu.org
Cc: Romain GARBAGE <romain.garbage <at> inria.fr>
Subject: [PATCH 30/41] gnu: proteinortho: Remove dependency on lapack.
Date: Mon, 11 Mar 2024 12:07:11 +0100

* gnu/packages/bioinformatics.scm (proteinortho): Remove dependency on lapack.
---
 gnu/packages/bioinformatics.scm | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ac2f7c1ade..98bc05d154 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8673,7 +8673,9 @@ (define-public proteinortho
              (substitute* "Makefile"
                (("INSTALLDIR=.*")
                 (string-append
-                 "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n")))
+                 "INSTALLDIR=" (assoc-ref outputs "out") "/bin\n"))
+               (("-llapack -lblas")
+                "-lopenblas"))
              #t))
          (add-before 'install 'make-install-directory
            ;; The install directory is not created during 'make install'.
@@ -8697,7 +8699,6 @@ (define-public proteinortho
        ("perl" ,perl)
        ("python" ,python-wrapper)
        ("blast+" ,blast+)
-       ("lapack" ,lapack)
        ("openblas" ,openblas)))
     (native-inputs
      (list which))
-- 
2.41.0

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