GNU bug report logs - #69729
[PATCH 00/41] Improve performance in lapack dependent packages.

Previous Next

Package: guix-patches;

Reported by: Romain GARBAGE <romain.garbage <at> inria.fr>

Date: Mon, 11 Mar 2024 11:06:01 UTC

Severity: normal

Tags: patch

Done: Ludovic Courtès <ludovic.courtes <at> inria.fr>

Bug is archived. No further changes may be made.

Full log


View this message in rfc822 format

From: Romain GARBAGE <romain.garbage <at> inria.fr>
To: 69729 <at> debbugs.gnu.org
Cc: Romain GARBAGE <romain.garbage <at> inria.fr>
Subject: [bug#69729] [PATCH 19/41] gnu: plink-ng: Remove lapack dep.
Date: Mon, 11 Mar 2024 12:07:00 +0100
* gnu/packages/bioinformatics.scm (plink-ng): Remove dependency to lapack.

Change-Id: I4d14789c42dc216244872d70120efeeb97127a62
---
 gnu/packages/bioinformatics.scm | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8b2fe2d017..6c2dc95fa6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9650,7 +9650,7 @@ (define-public plink-ng
      (list
       #:tests? #false ;TEST_EXTRACT_CHR doesn't produce expected files
       #:make-flags
-      #~(list "BLASFLAGS=-llapack -lopenblas"
+      #~(list "BLASFLAGS=-lopenblas"
               "NO_SSE42=1"
               "NO_AVX2=1"
               "STATIC_ZSTD="
@@ -9677,7 +9677,7 @@ (define-public plink-ng
                            (string-append
                             (assoc-ref outputs "out") "/bin")))))))
     (inputs
-     (list lapack openblas zlib `(,zstd "lib")))
+     (list openblas zlib `(,zstd "lib")))
     (native-inputs
      (list diffutils plink python simde)) ; for tests
     (home-page "https://www.cog-genomics.org/plink/")
-- 
2.41.0





This bug report was last modified 1 year and 50 days ago.

Previous Next


GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.