GNU bug report logs - #69729
[PATCH 00/41] Improve performance in lapack dependent packages.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Romain GARBAGE <romain.garbage <at> inria.fr>
Subject: bug#69729: closed (Re: [bug#69729] [PATCH 00/41] Improve
 performance in lapack dependent packages.)
Date: Thu, 04 Apr 2024 15:18:02 +0000

[Message part 1 (text/plain, inline)]

Your bug report

#69729: [PATCH 00/41] Improve performance in lapack dependent packages.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to 69729 <at> debbugs.gnu.org.

-- 
69729: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=69729
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

[Message part 2 (message/rfc822, inline)]

From: Ludovic Courtès <ludovic.courtes <at> inria.fr>
To: Romain GARBAGE <romain.garbage <at> inria.fr>
Cc: 69729-done <at> debbugs.gnu.org
Subject: Re: [bug#69729] [PATCH 00/41] Improve performance in lapack
 dependent packages.
Date: Thu, 04 Apr 2024 17:17:19 +0200

Hello,

Romain GARBAGE <romain.garbage <at> inria.fr> skribis:

>   gnu: arpack-ng: Switch to openblas.
>   gnu: armadillo: Switch to openblas.
>   gnu: octave-cli: Switch to openblas.
>   gnu: scalapack: Switch to openblas.
>   gnu: hypre: Switch to openblas.
>   gnu: igraph: Switch to openblas.
>   gnu: vosk-api: Remove dependency on lapack.
>   gnu: jags: Switch to openblas.
>   gnu: sbcl-lla: Switch to openblas.
>   gnu: itpp: Switch to openblas.
>   gnu: gmsh: Switch to openblas.
>   gnu: ghc-hmatrix: Switch to openblas.
>   gnu: fenics-dolfin: Remove dependency on lapack.
>   gnu: ipopt: Switch to openblas.
>   gnu: ceres: Remove dependency on lapack.
>   gnu: sundials-julia: Switch to openblas.
>   gnu: plink: Switch to openblas.
>   gnu: p4est: Remove dependency on lapack.
>   gnu: plink-ng: Remove lapack dep.
>   gnu: dealii: Remove dependency on lapack.
>   gnu: elemental: Remove dependency on lapack.
>   gnu: superlu-dist: Remove dependency on lapack.
>   gnu: bonmin: Switch to openblas.
>   gnu: mpb: Switch to openblas.
>   gnu: meep: Switch to openblas.
>   gnu: casacore: Remove dependency on lapack.
>   gnu: aoflagger: Remove dependency on lapack.
>   gnu: apl: Switch to openblas.
>   gnu: eigensoft: Remove dependency on lapack.
>   gnu: proteinortho: Remove dependency on lapack.
>   gnu: scilab: Remove dependency on lapack.
>   gnu: python-cvxopt: Remove dependency on lapack.
>   gnu: dlib: Remove dependency on lapack.
>   gnu: grass: Remove dependency on lapack.
>   gnu: harminv: Switch to openblas.
>   gnu: giac: Switch to openblas.
>   gnu: libflame: Switch to openblas.
>   gnu: lush2: Remove dependency on lapack.
>   gnu: shogun: Switch to openblas.
>   gnu: kaldi-for-vosk: Remove dependency on lapack.
>   gnu: ocaml-lacaml: Remove dependency on lapack.

Pushed as e6df74d2b1afb71121228330fce9b5020d00220a.

Thanks!

Ludo’.

[Message part 3 (message/rfc822, inline)]

From: Romain GARBAGE <romain.garbage <at> inria.fr>
To: guix-patches <at> gnu.org
Cc: Romain GARBAGE <romain.garbage <at> inria.fr>
Subject: [PATCH 00/41] Improve performance in lapack dependent packages.
Date: Mon, 11 Mar 2024 12:01:55 +0100

This patch series aims at improving the performance of several packages by changing the LAPACK library they depend on.

The package `lapack` is the reference implementation from netlib.org of a numerical linear algebra library, written in FORTRAN.

The package `openblas` is a optimized implementation of the LAPACK and BLAS APIs.

Among the modified packages affected by the change, the following don't build:
 * shogun: atlas dependency doesn't build (pre-existing error)
 * lush2: preexisting error
 * proteinortho: preexisting error (tests 2 and 3 fail)
 * superlu-dist: dependency failure (combinatorial-blas)


Also, the following packages have not been modified as it breaks the package:
 * xyce-serial
 * xyce-parallel
 * gnss-sdr
 * julia

Romain GARBAGE (41):
  gnu: arpack-ng: Switch to openblas.
  gnu: armadillo: Switch to openblas.
  gnu: octave-cli: Switch to openblas.
  gnu: scalapack: Switch to openblas.
  gnu: hypre: Switch to openblas.
  gnu: igraph: Switch to openblas.
  gnu: vosk-api: Remove dependency on lapack.
  gnu: jags: Switch to openblas.
  gnu: sbcl-lla: Switch to openblas.
  gnu: itpp: Switch to openblas.
  gnu: gmsh: Switch to openblas.
  gnu: ghc-hmatrix: Switch to openblas.
  gnu: fenics-dolfin: Remove dependency on lapack.
  gnu: ipopt: Switch to openblas.
  gnu: ceres: Remove dependency on lapack.
  gnu: sundials-julia: Switch to openblas.
  gnu: plink: Switch to openblas.
  gnu: p4est: Remove dependency on lapack.
  gnu: plink-ng: Remove lapack dep.
  gnu: dealii: Remove dependency on lapack.
  gnu: elemental: Remove dependency on lapack.
  gnu: superlu-dist: Remove dependency on lapack.
  gnu: bonmin: Switch to openblas.
  gnu: mpb: Switch to openblas.
  gnu: meep: Switch to openblas.
  gnu: casacore: Remove dependency on lapack.
  gnu: aoflagger: Remove dependency on lapack.
  gnu: apl: Switch to openblas.
  gnu: eigensoft: Remove dependency on lapack.
  gnu: proteinortho: Remove dependency on lapack.
  gnu: scilab: Remove dependency on lapack.
  gnu: python-cvxopt: Remove dependency on lapack.
  gnu: dlib: Remove dependency on lapack.
  gnu: grass: Remove dependency on lapack.
  gnu: harminv: Switch to openblas.
  gnu: giac: Switch to openblas.
  gnu: libflame: Switch to openblas.
  gnu: lush2: Remove dependency on lapack.
  gnu: shogun: Switch to openblas.
  gnu: kaldi-for-vosk: Remove dependency on lapack.
  gnu: ocaml-lacaml: Remove dependency on lapack.

 gnu/packages/algebra.scm          |  2 +-
 gnu/packages/apl.scm              |  2 +-
 gnu/packages/astronomy.scm        |  2 --
 gnu/packages/bioinformatics.scm   | 17 ++++++------
 gnu/packages/engineering.scm      |  6 ++--
 gnu/packages/geo.scm              |  6 +++-
 gnu/packages/graph.scm            |  2 +-
 gnu/packages/haskell-xyz.scm      |  9 ++----
 gnu/packages/lisp-xyz.scm         |  6 ++--
 gnu/packages/lisp.scm             |  1 -
 gnu/packages/machine-learning.scm | 15 ++++------
 gnu/packages/maths.scm            | 46 ++++++++++++++-----------------
 gnu/packages/ocaml.scm            |  9 ++++--
 gnu/packages/simulation.scm       |  3 +-
 gnu/packages/statistics.scm       |  6 +++-
 15 files changed, 65 insertions(+), 67 deletions(-)

-- 
2.41.0

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