GNU bug report logs -
#69729
[PATCH 00/41] Improve performance in lapack dependent packages.
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Reported by: Romain GARBAGE <romain.garbage <at> inria.fr>
Date: Mon, 11 Mar 2024 11:06:01 UTC
Severity: normal
Tags: patch
Done: Ludovic Courtès <ludovic.courtes <at> inria.fr>
Bug is archived. No further changes may be made.
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Your message dated Thu, 04 Apr 2024 17:17:19 +0200
with message-id <87plv5taww.fsf <at> gnu.org>
and subject line Re: [bug#69729] [PATCH 00/41] Improve performance in lapack dependent packages.
has caused the debbugs.gnu.org bug report #69729,
regarding [PATCH 00/41] Improve performance in lapack dependent packages.
to be marked as done.
(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)
--
69729: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=69729
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems
[Message part 2 (message/rfc822, inline)]
This patch series aims at improving the performance of several packages by changing the LAPACK library they depend on.
The package `lapack` is the reference implementation from netlib.org of a numerical linear algebra library, written in FORTRAN.
The package `openblas` is a optimized implementation of the LAPACK and BLAS APIs.
Among the modified packages affected by the change, the following don't build:
* shogun: atlas dependency doesn't build (pre-existing error)
* lush2: preexisting error
* proteinortho: preexisting error (tests 2 and 3 fail)
* superlu-dist: dependency failure (combinatorial-blas)
Also, the following packages have not been modified as it breaks the package:
* xyce-serial
* xyce-parallel
* gnss-sdr
* julia
Romain GARBAGE (41):
gnu: arpack-ng: Switch to openblas.
gnu: armadillo: Switch to openblas.
gnu: octave-cli: Switch to openblas.
gnu: scalapack: Switch to openblas.
gnu: hypre: Switch to openblas.
gnu: igraph: Switch to openblas.
gnu: vosk-api: Remove dependency on lapack.
gnu: jags: Switch to openblas.
gnu: sbcl-lla: Switch to openblas.
gnu: itpp: Switch to openblas.
gnu: gmsh: Switch to openblas.
gnu: ghc-hmatrix: Switch to openblas.
gnu: fenics-dolfin: Remove dependency on lapack.
gnu: ipopt: Switch to openblas.
gnu: ceres: Remove dependency on lapack.
gnu: sundials-julia: Switch to openblas.
gnu: plink: Switch to openblas.
gnu: p4est: Remove dependency on lapack.
gnu: plink-ng: Remove lapack dep.
gnu: dealii: Remove dependency on lapack.
gnu: elemental: Remove dependency on lapack.
gnu: superlu-dist: Remove dependency on lapack.
gnu: bonmin: Switch to openblas.
gnu: mpb: Switch to openblas.
gnu: meep: Switch to openblas.
gnu: casacore: Remove dependency on lapack.
gnu: aoflagger: Remove dependency on lapack.
gnu: apl: Switch to openblas.
gnu: eigensoft: Remove dependency on lapack.
gnu: proteinortho: Remove dependency on lapack.
gnu: scilab: Remove dependency on lapack.
gnu: python-cvxopt: Remove dependency on lapack.
gnu: dlib: Remove dependency on lapack.
gnu: grass: Remove dependency on lapack.
gnu: harminv: Switch to openblas.
gnu: giac: Switch to openblas.
gnu: libflame: Switch to openblas.
gnu: lush2: Remove dependency on lapack.
gnu: shogun: Switch to openblas.
gnu: kaldi-for-vosk: Remove dependency on lapack.
gnu: ocaml-lacaml: Remove dependency on lapack.
gnu/packages/algebra.scm | 2 +-
gnu/packages/apl.scm | 2 +-
gnu/packages/astronomy.scm | 2 --
gnu/packages/bioinformatics.scm | 17 ++++++------
gnu/packages/engineering.scm | 6 ++--
gnu/packages/geo.scm | 6 +++-
gnu/packages/graph.scm | 2 +-
gnu/packages/haskell-xyz.scm | 9 ++----
gnu/packages/lisp-xyz.scm | 6 ++--
gnu/packages/lisp.scm | 1 -
gnu/packages/machine-learning.scm | 15 ++++------
gnu/packages/maths.scm | 46 ++++++++++++++-----------------
gnu/packages/ocaml.scm | 9 ++++--
gnu/packages/simulation.scm | 3 +-
gnu/packages/statistics.scm | 6 +++-
15 files changed, 65 insertions(+), 67 deletions(-)
--
2.41.0
[Message part 3 (message/rfc822, inline)]
Hello,
Romain GARBAGE <romain.garbage <at> inria.fr> skribis:
> gnu: arpack-ng: Switch to openblas.
> gnu: armadillo: Switch to openblas.
> gnu: octave-cli: Switch to openblas.
> gnu: scalapack: Switch to openblas.
> gnu: hypre: Switch to openblas.
> gnu: igraph: Switch to openblas.
> gnu: vosk-api: Remove dependency on lapack.
> gnu: jags: Switch to openblas.
> gnu: sbcl-lla: Switch to openblas.
> gnu: itpp: Switch to openblas.
> gnu: gmsh: Switch to openblas.
> gnu: ghc-hmatrix: Switch to openblas.
> gnu: fenics-dolfin: Remove dependency on lapack.
> gnu: ipopt: Switch to openblas.
> gnu: ceres: Remove dependency on lapack.
> gnu: sundials-julia: Switch to openblas.
> gnu: plink: Switch to openblas.
> gnu: p4est: Remove dependency on lapack.
> gnu: plink-ng: Remove lapack dep.
> gnu: dealii: Remove dependency on lapack.
> gnu: elemental: Remove dependency on lapack.
> gnu: superlu-dist: Remove dependency on lapack.
> gnu: bonmin: Switch to openblas.
> gnu: mpb: Switch to openblas.
> gnu: meep: Switch to openblas.
> gnu: casacore: Remove dependency on lapack.
> gnu: aoflagger: Remove dependency on lapack.
> gnu: apl: Switch to openblas.
> gnu: eigensoft: Remove dependency on lapack.
> gnu: proteinortho: Remove dependency on lapack.
> gnu: scilab: Remove dependency on lapack.
> gnu: python-cvxopt: Remove dependency on lapack.
> gnu: dlib: Remove dependency on lapack.
> gnu: grass: Remove dependency on lapack.
> gnu: harminv: Switch to openblas.
> gnu: giac: Switch to openblas.
> gnu: libflame: Switch to openblas.
> gnu: lush2: Remove dependency on lapack.
> gnu: shogun: Switch to openblas.
> gnu: kaldi-for-vosk: Remove dependency on lapack.
> gnu: ocaml-lacaml: Remove dependency on lapack.
Pushed as e6df74d2b1afb71121228330fce9b5020d00220a.
Thanks!
Ludo’.
This bug report was last modified 1 year and 50 days ago.
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