GNU bug report logs - #69729
[PATCH 00/41] Improve performance in lapack dependent packages.

Previous Next

Package: guix-patches;

Reported by: Romain GARBAGE <romain.garbage <at> inria.fr>

Date: Mon, 11 Mar 2024 11:06:01 UTC

Severity: normal

Tags: patch

Done: Ludovic Courtès <ludovic.courtes <at> inria.fr>

Bug is archived. No further changes may be made.

Full log


View this message in rfc822 format

From: Romain GARBAGE <romain.garbage <at> inria.fr>
To: 69729 <at> debbugs.gnu.org
Cc: Romain GARBAGE <romain.garbage <at> inria.fr>
Subject: [bug#69729] [PATCH 17/41] gnu: plink: Switch to openblas.
Date: Mon, 11 Mar 2024 12:06:58 +0100
* gnu/packages/bioinformatics.scm (plink): Switch input dependency from
lapack to openblas.

Change-Id: I8066a50c880b72a77ba00c2bc39403e212605b9d
---
 gnu/packages/bioinformatics.scm | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b8ecea013c..8b2fe2d017 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9599,8 +9599,8 @@ (define-public plink
     (arguments
      `(#:tests? #f ;no "check" target
        #:make-flags ,#~(list (string-append "LIB_LAPACK="
-                                            #$(this-package-input "lapack")
-                                            "/lib/liblapack.so")
+                                            #$(this-package-input "openblas")
+                                            "/lib/libopenblas.so")
                              "WITH_LAPACK=1"
                              "FORCE_DYNAMIC=1"
                              ;; disable phoning home
@@ -9615,7 +9615,7 @@ (define-public plink
                                        "/bin/")))
                (install-file "plink" bin)))))))
     (inputs
-     (list zlib lapack))
+     (list zlib openblas))
     (native-inputs
      (list unzip gcc-8))
     (home-page "http://pngu.mgh.harvard.edu/~purcell/plink/")
-- 
2.41.0





This bug report was last modified 1 year and 50 days ago.

Previous Next


GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.