From debbugs-submit-bounces@debbugs.gnu.org Tue Feb 27 18:40:11 2024 Received: (at submit) by debbugs.gnu.org; 27 Feb 2024 23:40:11 +0000 Received: from localhost ([127.0.0.1]:37405 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rf73S-0002sP-K5 for submit@debbugs.gnu.org; Tue, 27 Feb 2024 18:40:11 -0500 Received: from lists.gnu.org ([209.51.188.17]:46570) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rf73L-0002r1-Ph for submit@debbugs.gnu.org; Tue, 27 Feb 2024 18:40:05 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rf6Uz-0003we-39 for guix-patches@gnu.org; Tue, 27 Feb 2024 18:04:33 -0500 Received: from mta-12-4.privateemail.com ([198.54.127.107]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rf6Ux-0002ZU-7I for guix-patches@gnu.org; Tue, 27 Feb 2024 18:04:32 -0500 Received: from mta-12.privateemail.com (localhost [127.0.0.1]) by mta-12.privateemail.com (Postfix) with ESMTP id 3A3ED18000B3 for ; Tue, 27 Feb 2024 18:04:23 -0500 (EST) DKIM-Signature: v=1; a=rsa-sha256; c=simple/simple; d=aartaka.me; s=default; t=1709075063; bh=kFc4C33nPhyzaBrzCZ8hT1n971W+tz56SYnLldljThQ=; h=From:To:Subject:Date:From; b=dEEwtBcl/pP7UoxT9XHP9TWiTTh4OG6GUUvDH+t5+qghFr5X1umlACcKufH5zv0VW 6EEL0KOYrIbrxO1L4RGOupftldYMvnl3pMlIPt0vG0m3YsLQE3VN2h1NzmKPYdlYty LBDobgLuyBlr6Ra/oUyzQ8Yh6vI7Hk/v0n51wY3sMxjg/y+Oc1FHmFtTXDIbxxAuPt CnkmhC+j7MxpCRZh4A6t4GpoHl8sJ2ikoZKswbqhSZ8V/bqF54UJdEkaSQxiWIgNKJ W3N6ZII6Lomkjj3TJw5rnk299HhZqypKGr4whlrz7Z883sjses/F8J+DtqQTT7NBMv FS09EVj17dRBg== Received: from paranoidal (unknown [185.167.217.34]) by mta-12.privateemail.com (Postfix) with ESMTPA for ; Tue, 27 Feb 2024 18:04:22 -0500 (EST) User-agent: mu4e 1.10.8; emacs 29.1 From: Artyom Bologov To: Guix patches Subject: [PATCH] gnu: Add guile-gsl. Date: Wed, 28 Feb 2024 02:56:12 +0400 Message-ID: <877ciptsq4.fsf@aartaka.me> MIME-Version: 1.0 Content-Type: multipart/mixed; boundary="=-=-=" X-Virus-Scanned: ClamAV using ClamSMTP Received-SPF: pass client-ip=198.54.127.107; envelope-from=mail@aartaka.me; helo=MTA-12-4.privateemail.com X-Spam_score_int: 16 X-Spam_score: 1.6 X-Spam_bar: + X-Spam_report: (1.6 / 5.0 requ) BAYES_00=-1.9, DKIM_INVALID=0.1, DKIM_SIGNED=0.1, RCVD_IN_DNSWL_NONE=-0.0001, RCVD_IN_MSPIKE_H2=-0.001, RCVD_IN_SBL_CSS=3.335, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=no autolearn_force=no X-Spam_action: no action X-Spam-Score: 2.2 (++) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: Hi y'all, This is both a patch submission and a call for help—I'm far out of my waters with this package and am not sure of the proper Guix-y way to build it. So the build sequence for Guile GSL is: (1) Compile a bundled libguilegslblas.so with a C compiler, using the GSL libraries from package inputs. (2) Put proper paths to the GSL libraries and libguileg [...] Content analysis details: (2.2 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- -2.3 RCVD_IN_DNSWL_MED RBL: Sender listed at https://www.dnswl.org/, medium trust [209.51.188.17 listed in list.dnswl.org] 3.6 RCVD_IN_SBL_CSS RBL: Received via a relay in Spamhaus SBL-CSS [185.167.217.34 listed in zen.spamhaus.org] 1.0 SPF_SOFTFAIL SPF: sender does not match SPF record (softfail) -0.0 SPF_HELO_PASS SPF: HELO matches SPF record -0.0 T_SCC_BODY_TEXT_LINE No description available. X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: 1.2 (+) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. The original message has been attached to this so you can view it or label similar future email. If you have any questions, see the administrator of that system for details. Content preview: Hi y'all, This is both a patch submission and a call for help—I'm far out of my waters with this package and am not sure of the proper Guix-y way to build it. So the build sequence for Guile GSL is: (1) Compile a bundled libguilegslblas.so with a C compiler, using the GSL libraries from package inputs. (2) Put proper paths to the GSL libraries and libguileg [...] Content analysis details: (1.2 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- 3.6 RCVD_IN_SBL_CSS RBL: Received via a relay in Spamhaus SBL-CSS [185.167.217.34 listed in zen.spamhaus.org] -2.3 RCVD_IN_DNSWL_MED RBL: Sender listed at https://www.dnswl.org/, medium trust [209.51.188.17 listed in list.dnswl.org] 1.0 SPF_SOFTFAIL SPF: sender does not match SPF record (softfail) -0.0 SPF_HELO_PASS SPF: HELO matches SPF record -0.0 T_SCC_BODY_TEXT_LINE No description available. -1.0 MAILING_LIST_MULTI Multiple indicators imply a widely-seen list manager --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Hi y'all, This is both a patch submission and a call for help=E2=80=94I'm far out of = my waters with this package and am not sure of the proper Guix-y way to build it. So the build sequence for Guile GSL is: (1) Compile a bundled libguilegslblas.so with a C compiler, using the GSL libraries from package inputs. (2) Put proper paths to the GSL libraries and libguilegslblas into the Scheme files. (3) Compile Scheme files as per guile-build-system. I've got (2) and (3) more or less working. The problem is: which build system should I use and how do I synthesize GNU build system (makefile, libguilegslblas.so, (1)) and Guile one? You can find my draft (doesn't build and is not usable in general) patch attached below. Any help appreciated! --=-=-= Content-Type: text/x-patch Content-Disposition: attachment; filename=0001-gnu-Add-guile-gsl.patch Content-Description: gnu: Add guile-gsl >From 5bd38a674fff008c189d1c39495d771354c945fb Mon Sep 17 00:00:00 2001 From: Artyom Bologov Date: Wed, 28 Feb 2024 02:54:31 +0400 Subject: [PATCH] gnu: Add guile-gsl. * gnu/packages/guile-xyz.scm (guile-gsl): New variable. --- gnu/packages/guile-xyz.scm | 34 ++++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index b34472d5bd..6b9492c4b7 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -4474,6 +4474,40 @@ (define-public guile-ffi-cblas function: raw, typed, and functional.") (license license:lgpl3+)))) +(define-public guile-gsl + (let ((commit "8540bcb6afa9be37153852255608d26d5a4df9dd") + (revision "0")) + (package + (name "guile-gsl") + (version "0.0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aartaka/guile-gsl") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "00dy33ibvfhzs5xp65g4g8d02wy4fiamjbp3pg87cghg41q4lwkr")))) + (build-system guile-build-system) + (arguments + '(#:source-directory "modules" + #:phases + #~(modify-phases %standard-phases + (add-before 'build 'substitute-gsl-so + (lambda _ + (let ((gsl (string-append #$(this-package-input "lmdb") + "/lib/libgsl.so"))) + (substitute* "modules/gsl/core.scm" + (("libgsl.so") gsl)))))))) + (native-inputs (list guile-3.0)) + (inputs (list guile-3.0 gsl)) + (home-page "https://github.com/aartaka/guile-gsl") + (synopsis "Bindings for GNU Scientific library in Guile.") + (description "This package provides Guile Scheme wrapper for libgsl.so. +Only vector, matrix, and BLAS operations are covered for now.") + (license license:gpl3+)))) + (define-public guile-ffi-fftw (let ((commit "294ad9e7491dcb40026d2fec9be2af05263be1c0") (revision "2")) -- 2.41.0 --=-=-= Content-Type: text/plain Thanks, -- Artyom Bologov. --=-=-=-- From debbugs-submit-bounces@debbugs.gnu.org Fri Mar 08 18:31:59 2024 Received: (at 69443) by debbugs.gnu.org; 8 Mar 2024 23:31:59 +0000 Received: from localhost ([127.0.0.1]:59958 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rijh1-0005Vs-23 for submit@debbugs.gnu.org; Fri, 08 Mar 2024 18:31:59 -0500 Received: from mail-lf1-f49.google.com ([209.85.167.49]:52442) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rijgv-0005Va-W7 for 69443@debbugs.gnu.org; Fri, 08 Mar 2024 18:31:57 -0500 Received: by mail-lf1-f49.google.com with SMTP id 2adb3069b0e04-51381021af1so1865547e87.0 for <69443@debbugs.gnu.org>; Fri, 08 Mar 2024 15:31:21 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1709940615; x=1710545415; darn=debbugs.gnu.org; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:from:to:cc:subject:date:message-id:reply-to; bh=KTFu6MZQPgRGhhghse7ElNjm+JBwDJBuK2IOpa16kBo=; b=XyNqfawpJtHwthZ/+47vp8oI2Q2kzGj7wiJIUB7iczo36MOdX40Bqyf0LoVbvVyp9J Vwe2UaxdYb+ooNAQ1vUTKNQeU4uNdmGGeoqZXS6WN/EPapq4w0TeCXhONc6xJ/7rVEXO SqUHGALEbqd+AIcEzbiso21a1f9eZBc2SbdD/Oy5g6YkJnHlsIX0pF6cOPuiid0Yt/51 3ZYxs9cv85rHjTPbLR9RxToj2P+MyG1oc4gJS6Rp9iPQXHPSzZ+dMbojhgNkyeePc5iF OYU55pMNm+kELXSNN6ZTdPWrSoBjUvDf7c5FXGaUUYcfMSmH5+a6XE0Dwu7o71oVin34 /DiA== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1709940615; x=1710545415; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:x-gm-message-state:from:to:cc:subject:date:message-id :reply-to; bh=KTFu6MZQPgRGhhghse7ElNjm+JBwDJBuK2IOpa16kBo=; b=hL+mgfEKHm3Mar4O833qTVGmtCFv1pEveoc1gwRHLv7iasKXcJHsq/lACKA3odoZyv QEe5e5/Vd4CE7DCgjm3ge9O9KmEcAt2xNHlfKEW9z9I1l7uHhLB8WDIg5fGF5jhtd2Lr 1sbb8aWDT1p1nP5ZUHaa5GNglsTnV0iHfXQ67y+S991skfpCHP6bucrwhNCBIJJb2+tq zLTRYkjW/h3eInPpns8iRJXgC4+sccC8s8ivnLqy1aPStgW98F7KfCb5edCBJvbq8JpJ AX0huY95Tzd3RRNE/evo0jaoouPVXiQ+bNbph7Z1SFNwAx7/UQcnYbO5IVvmqKuzUYzd KS7Q== X-Gm-Message-State: AOJu0YwDrf/4XWRRxankIOW9AgWXOlRWnJklXCyOdWoKoF5wCJjxvJQf 6CRQzyL24KlrSoOrlOrc1VHZN11RG1T5clcGla0oAfNMSTji40dOXGOpYbGU X-Google-Smtp-Source: AGHT+IHhQBxNV3JCTExZBFcArctBYB0IZIbcfuUwhdqIfeHO7Fc97LexhlO8wi3m5sfiSQ6QT9oYxA== X-Received: by 2002:a05:6512:48ca:b0:513:6917:ae8e with SMTP id er10-20020a05651248ca00b005136917ae8emr257435lfb.37.1709940614891; Fri, 08 Mar 2024 15:30:14 -0800 (PST) Received: from elephant.. ([5.164.220.172]) by smtp.gmail.com with ESMTPSA id h23-20020a056512055700b005131ec01b6dsm97992lfl.246.2024.03.08.15.30.14 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Fri, 08 Mar 2024 15:30:14 -0800 (PST) From: "Artyom V. Poptsov" To: 69443@debbugs.gnu.org Subject: [PATCH] gnu: guile-gsl: Fix build. Date: Sat, 9 Mar 2024 02:29:41 +0300 Message-ID: <04ce2de3be93a1a06345350f46b29b159c3ef6a3.1709940581.git.poptsov.artyom@gmail.com> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-Debbugs-Cc: glv@posteo.net, cox.katherine.e+guix@gmail.com, me@bonfacemunyoki.com, sharlatanus@gmail.com, jgart@dismail.de Content-Transfer-Encoding: 8bit X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 69443 Cc: "Artyom V. Poptsov" , mail@aartaka.me X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/guile-xyz.scm (guile-gsl): Fix build. Change-Id: Iaf653f25fd2b972e575d9c2fd1607cd490cc17db --- gnu/packages/guile-xyz.scm | 86 ++++++++++++++++++++++++++++---------- 1 file changed, 65 insertions(+), 21 deletions(-) diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index 9ddcc626fe..1f9d1ecb3e 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -4522,31 +4522,75 @@ (define-public guile-gsl (package (name "guile-gsl") (version "0.0.1") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/aartaka/guile-gsl") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "00dy33ibvfhzs5xp65g4g8d02wy4fiamjbp3pg87cghg41q4lwkr")))) - (build-system guile-build-system) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aartaka/guile-gsl") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "00dy33ibvfhzs5xp65g4g8d02wy4fiamjbp3pg87cghg41q4lwkr")))) + (build-system gnu-build-system) (arguments - '(#:source-directory "modules" - #:phases - #~(modify-phases %standard-phases - (add-before 'build 'substitute-gsl-so - (lambda _ - (let ((gsl (string-append #$(this-package-input "lmdb") - "/lib/libgsl.so"))) - (substitute* "modules/gsl/core.scm" - (("libgsl.so") gsl)))))))) + (list + #:modules `(((guix build guile-build-system) + #:select (target-guile-effective-version)) + ,@%gnu-build-system-modules) + #:imported-modules `((guix build guile-build-system) + ,@%gnu-build-system-modules) + #:phases #~(modify-phases %standard-phases + (add-before 'build 'substitute-gsl-so + (lambda _ + (let ((gsl (string-append #$(this-package-input "gsl") + "/lib/libgsl.so"))) + (substitute* "modules/gsl/core.scm" + (("libgsl.so") + gsl))))) + (delete 'configure) + (replace 'build + (lambda* (#:key inputs #:allow-other-keys) + (setenv "CC" "gcc") + (setenv "GUILE_AUTO_COMPILE" "0") + (invoke "make") + (setenv "LD_LIBRARY_PATH" "./") + (let* ((module-dir "modules") + (prefix (string-length module-dir))) + (for-each (lambda (file) + (let* ((base (string-drop (string-drop-right + file 4) + prefix)) + (go (string-append "go" base + ".go"))) + (invoke "guild" + "compile" + "-L" + module-dir + file + "-o" + go))) + (find-files module-dir "\\.scm$"))))) + (delete 'check) ;no tests + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((lib (string-append #$output "/lib")) + (guile #$(this-package-input "guile")) + (version (target-guile-effective-version guile)) + (scm (string-append "/share/guile/site/" + version)) + (go (string-append "/lib/guile/" version + "/site-ccache"))) + (install-file "libguilegslblas.so" lib) + (copy-recursively "modules/" + (string-append #$output scm)) + (copy-recursively "go/" + (string-append #$output go)))))))) (native-inputs (list guile-3.0)) (inputs (list guile-3.0 gsl)) (home-page "https://github.com/aartaka/guile-gsl") - (synopsis "Bindings for GNU Scientific library in Guile.") - (description "This package provides Guile Scheme wrapper for libgsl.so. + (synopsis "Bindings for GNU Scientific library in Guile") + (description + "This package provides Guile Scheme wrapper for @code{libgsl.so}. Only vector, matrix, and BLAS operations are covered for now.") 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[82.25.93.113]) by smtp.gmail.com with ESMTPSA id t10-20020a05600c198a00b004156afd6843sm2372922wmq.18.2024.04.04.04.27.15 for <69443-done@debbugs.gnu.org> (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Thu, 04 Apr 2024 04:27:15 -0700 (PDT) From: Sharlatan Hellseher To: 69443-done@debbugs.gnu.org Subject: [PATCH] gnu: Add guile-gsl. Date: Thu, 04 Apr 2024 12:27:14 +0100 Message-ID: <87il0x5pwt.fsf@gmail.com> MIME-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 69443-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) --=-=-= Content-Type: text/plain Hi, Patch applied based on . Thanks, Oleg --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEmEeB3micIcJkGAhndtcnv/Ys0rUFAmYOjpIACgkQdtcnv/Ys 0rUDuQ//bAZpvBbnRcFHUhrhTRtMioHhMBX224ckPk30TDqStnjI/SIggnzbZv51 V4/VorZ27KIQeMFKYBIMeyMtv2Pyi8X4nZPWdcXQcEcQBQCD6xyemggu3+FHCsEp 37lpy0atmURTdNl+r2YNdhffHi4HTnMaoCyQOcyWf5tRcbXSEpR1/HN4X5/65fjz pf7TsJfD10p8HqWu318nHitH5v+rQkmjypOEnD3tQ1Nzkq1tpGpsTzCDHeplkF5l +3Whoiy5zJsOrIhU4O1UA8KyFESKfE6VGGljoZUblViwJX3xXACNEohsJzUYszyB BzpTwaQpRzi9LUML1VRqYMyGLUycHwOKphFUrE1R4coKk0/XGJlXLlwdR4hemHHU lxblpKjQK6BmRcQYXEeNX8ryjk2l17KTalK+J6IhINl40+ontbkMeOCH84aG7o+x jM5dEiO9zEleprb2nQOTFwd552o6LF83ojDM4M2M8uG+V4TIMAs2jduM00MOOdG0 RCd2kpdaxv2B+8S7q/GkFIgk7F33lVYLIQi7J4cKhSr1DCf29ISZxu+bQPkqAmWz 3bIg1CMySeP7ITwECujjzmgRm/5AK//wFqtOpgelKL2PY7w8jvdc+L8QG5HNpCI6 r8Ey12SAchVJZM/avyveLFiknCIlcfRZC7V7TidmUb+bnbMcSos= =n/Le -----END PGP SIGNATURE----- --=-=-=-- From unknown Sat Jun 21 12:13:15 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. 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