Subject: bug#69273: closed (Close)

From: [email-masked] (GNU bug Tracking System)
Date: Thu, 07 Mar 2024 18:39:02 +0000

Your bug report

#69273: [PATCH] gnu: python-ega-download-client: Update to 5.1.0.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
69273: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=69273
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: Close
From: Andreas Enge <[email-masked]>
To: [email-masked]
Date: Thu, 7 Mar 2024 19:37:21 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

The patch does not update the package, we are already at this version.
Also it does not actually apply.

Actually it looks as if the tests to be disabled by this patch have
already been disabled in a different commit.

So I am closing this bug, thanks!

Andreas

Subject: [PATCH] gnu: python-ega-download-client: Update to 5.1.0.
From: nafkhamdc <[email-masked]>
To: <[email-masked]>
Cc: nafkhamdc <[email-masked]>
Date: Mon, 19 Feb 2024 15:42:22 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioinformatics.scm (python-ega-download-client): Update to 5.1.0.

Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 85507b6c15..00a20aa4fc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2541,18 +2541,20 @@ (define-public python-ega-download-client
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:test-flags
-      '(list "-k"
-             ;; These tests fail because they require internet access.
-             (string-append "not test_download.py"
-                            " and not test_htsget.py"
-                            " and not test_commands.py"))
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'relax-requirements
-           (lambda _
-             (substitute* "setup.py"
-               (("==") ">=")))))))
+      #:test-flags '(list "-k"
+                          ;; These tests fail because they require internet access.
+                          (string-append "not test_download.py"
+                                         " and not test_htsget.py"
+                                         " and not test_commands.py"
+                          ;; The following 2 tests are failing with MaxRetriesReachedError
+                                         " and not test_download_file.py"
+                                         " and not test_download_file.py"))
+      #:phases '(modify-phases %standard-phases
+                  (add-after 'unpack 'relax-requirements
+                    (lambda _
+                      (substitute* "setup.py"
+                        (("==")
+                         ">=")))))))
     (propagated-inputs (list python-htsget python-psutil python-requests
                              python-tqdm python-urllib3))
     (native-inputs (list python-coverage python-pytest python-pyfakefs

base-commit: 052ef145215d45e1fe0e179df3b8c9626e021c2b
-- 
2.34.1