Subject: [bug#69273] [PATCH] gnu: python-ega-download-client: Update to 5.1.0.

From: nafkhamdc <[email-masked]>
Date: Mon, 19 Feb 2024 15:42:22 +0000

* gnu/packages/bioinformatics.scm (python-ega-download-client): Update to 5.1.0.

Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a
---
 gnu/packages/bioinformatics.scm | 26 ++++++++++++++------------
 1 file changed, 14 insertions(+), 12 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 85507b6c15..00a20aa4fc 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2541,18 +2541,20 @@ (define-public python-ega-download-client
     (build-system pyproject-build-system)
     (arguments
      (list
-      #:test-flags
-      '(list "-k"
-             ;; These tests fail because they require internet access.
-             (string-append "not test_download.py"
-                            " and not test_htsget.py"
-                            " and not test_commands.py"))
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'relax-requirements
-           (lambda _
-             (substitute* "setup.py"
-               (("==") ">=")))))))
+      #:test-flags '(list "-k"
+                          ;; These tests fail because they require internet access.
+                          (string-append "not test_download.py"
+                                         " and not test_htsget.py"
+                                         " and not test_commands.py"
+                          ;; The following 2 tests are failing with MaxRetriesReachedError
+                                         " and not test_download_file.py"
+                                         " and not test_download_file.py"))
+      #:phases '(modify-phases %standard-phases
+                  (add-after 'unpack 'relax-requirements
+                    (lambda _
+                      (substitute* "setup.py"
+                        (("==")
+                         ">=")))))))
     (propagated-inputs (list python-htsget python-psutil python-requests
                              python-tqdm python-urllib3))
     (native-inputs (list python-coverage python-pytest python-pyfakefs

base-commit: 052ef145215d45e1fe0e179df3b8c9626e021c2b
-- 
2.34.1