From unknown Sun Jun 22 08:02:43 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#69273] [PATCH] gnu: python-ega-download-client: Update to 5.1.0. 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Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++------------ 1 file changed, 14 insertions(+), 12 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 85507b6c15..00a20aa4fc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2541,18 +2541,20 @@ (define-public python-ega-download-client (build-system pyproject-build-system) (arguments (list - #:test-flags - '(list "-k" - ;; These tests fail because they require internet access. - (string-append "not test_download.py" - " and not test_htsget.py" - " and not test_commands.py")) - #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "setup.py" - (("==") ">="))))))) + #:test-flags '(list "-k" + ;; These tests fail because they require internet access. + (string-append "not test_download.py" + " and not test_htsget.py" + " and not test_commands.py" + ;; The following 2 tests are failing with MaxRetriesReachedError + " and not test_download_file.py" + " and not test_download_file.py")) + #:phases '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + (("==") + ">="))))))) (propagated-inputs (list python-htsget python-psutil python-requests python-tqdm python-urllib3)) (native-inputs (list python-coverage python-pytest python-pyfakefs base-commit: 052ef145215d45e1fe0e179df3b8c9626e021c2b -- 2.34.1 From unknown Sun Jun 22 08:02:43 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: nafkhamdc Subject: bug#69273: closed (Close) Message-ID: References: X-Gnu-PR-Message: they-closed 69273 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 69273@debbugs.gnu.org Date: Thu, 07 Mar 2024 18:39:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1709836742-28605-1" This is a multi-part message in MIME format... ------------=_1709836742-28605-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #69273: [PATCH] gnu: python-ega-download-client: Update to 5.1.0. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 69273@debbugs.gnu.org. --=20 69273: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D69273 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1709836742-28605-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 69273-done) by debbugs.gnu.org; 7 Mar 2024 18:38:13 +0000 Received: from localhost ([127.0.0.1]:54880 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1riIdA-0007Q9-Se for submit@debbugs.gnu.org; Thu, 07 Mar 2024 13:38:13 -0500 Received: from hera.aquilenet.fr ([185.233.100.1]:49326) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1riId4-0007PU-TN for 69273-done@debbugs.gnu.org; Thu, 07 Mar 2024 13:38:11 -0500 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 394491349; Thu, 7 Mar 2024 19:37:29 +0100 (CET) X-Virus-Scanned: Debian amavisd-new at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id BbTNnx4sbwh0; Thu, 7 Mar 2024 19:37:28 +0100 (CET) Received: from jurong (unknown [IPv6:2001:861:c4:f2f0::c64]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 0E1132A5; Thu, 7 Mar 2024 19:37:28 +0100 (CET) Date: Thu, 7 Mar 2024 19:37:21 +0100 From: Andreas Enge To: 69273-done@debbugs.gnu.org Subject: Close Message-ID: MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 69273-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) The patch does not update the package, we are already at this version. Also it does not actually apply. Actually it looks as if the tests to be disabled by this patch have already been disabled in a different commit. So I am closing this bug, thanks! Andreas ------------=_1709836742-28605-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 19 Feb 2024 15:43:15 +0000 Received: from localhost ([127.0.0.1]:43216 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rc5nX-0006bq-3X for submit@debbugs.gnu.org; Mon, 19 Feb 2024 10:43:15 -0500 Received: from lists.gnu.org ([209.51.188.17]:52386) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rc5nU-0006bf-87 for submit@debbugs.gnu.org; Mon, 19 Feb 2024 10:43:14 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rc5n8-0007oN-Pc for guix-patches@gnu.org; Mon, 19 Feb 2024 10:42:50 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rc5n5-0000WS-V0 for guix-patches@gnu.org; Mon, 19 Feb 2024 10:42:50 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1708357355; x=1710171756; bh=qQpDTfjUpjnfmsr 6zondNciP+7qeEA476JfgXOZH7Jw=; b=LdVUVYq5hAyodn7pjju1UlWMi8r2G85 b3bERHyx1M2qefNnbpwgEG9t7umCTJTVFyzwdNY5l9lSogqIIzwoUyszBMVB59nT 2zyry66XNy4zah0MmRVVtJEBCw7/0E+hx/tOfpQ40VWT7GMREugEqb6DvHkXWond HraYZwIKrGlA= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 18743300238 for ; Mon, 19 Feb 2024 16:42:35 +0100 (CET) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1258.28; Mon, 19 Feb 2024 16:42:34 +0100 From: nafkhamdc To: Subject: [PATCH] gnu: python-ega-download-client: Update to 5.1.0. 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Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++------------ 1 file changed, 14 insertions(+), 12 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 85507b6c15..00a20aa4fc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2541,18 +2541,20 @@ (define-public python-ega-download-client (build-system pyproject-build-system) (arguments (list - #:test-flags - '(list "-k" - ;; These tests fail because they require internet access. - (string-append "not test_download.py" - " and not test_htsget.py" - " and not test_commands.py")) - #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "setup.py" - (("==") ">="))))))) + #:test-flags '(list "-k" + ;; These tests fail because they require internet access. + (string-append "not test_download.py" + " and not test_htsget.py" + " and not test_commands.py" + ;; The following 2 tests are failing with MaxRetriesReachedError + " and not test_download_file.py" + " and not test_download_file.py")) + #:phases '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + (("==") + ">="))))))) (propagated-inputs (list python-htsget python-psutil python-requests python-tqdm python-urllib3)) (native-inputs (list python-coverage python-pytest python-pyfakefs base-commit: 052ef145215d45e1fe0e179df3b8c9626e021c2b -- 2.34.1 ------------=_1709836742-28605-1--