From debbugs-submit-bounces@debbugs.gnu.org Mon Feb 19 10:43:15 2024 Received: (at submit) by debbugs.gnu.org; 19 Feb 2024 15:43:15 +0000 Received: from localhost ([127.0.0.1]:43216 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rc5nX-0006bq-3X for submit@debbugs.gnu.org; Mon, 19 Feb 2024 10:43:15 -0500 Received: from lists.gnu.org ([209.51.188.17]:52386) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rc5nU-0006bf-87 for submit@debbugs.gnu.org; Mon, 19 Feb 2024 10:43:14 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rc5n8-0007oN-Pc for guix-patches@gnu.org; Mon, 19 Feb 2024 10:42:50 -0500 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rc5n5-0000WS-V0 for guix-patches@gnu.org; Mon, 19 Feb 2024 10:42:50 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1708357355; x=1710171756; bh=qQpDTfjUpjnfmsr 6zondNciP+7qeEA476JfgXOZH7Jw=; b=LdVUVYq5hAyodn7pjju1UlWMi8r2G85 b3bERHyx1M2qefNnbpwgEG9t7umCTJTVFyzwdNY5l9lSogqIIzwoUyszBMVB59nT 2zyry66XNy4zah0MmRVVtJEBCw7/0E+hx/tOfpQ40VWT7GMREugEqb6DvHkXWond HraYZwIKrGlA= Received: from SW-IT-P-EX4.mdc-berlin.net (mgw4.mdc-berlin.de [141.80.113.62]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 18743300238 for ; Mon, 19 Feb 2024 16:42:35 +0100 (CET) Received: from localhost (141.80.218.27) by SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1258.28; Mon, 19 Feb 2024 16:42:34 +0100 From: nafkhamdc To: Subject: [PATCH] gnu: python-ega-download-client: Update to 5.1.0. Date: Mon, 19 Feb 2024 15:42:22 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.1006-28202.000 X-TM-AS-Result: No-10--10.376300-5.000000 X-TMASE-MatchedRID: GuLXSO51EuFq4KVRKktxPAN+CmNIOQU3cV3n4J/0zUPAuQ0xDMaXkH4q tYI9sRE/xRuqz2yp6bqGnd3eINHu2PmEPaHBc5dLC8FMH3T6F75b4dXBMpIkhqMZvngJnzipBAV MudebvJjdTM5DE0iRAcign5HsLTCTuJXEeLLJ6+xvTnqYKYXTRuuLFZZYlisfHxPMjOKY7A8Lbi gRnpKlKTpcQTtiHDgW8CWccCKlLqiGYn3TMIt1IhRXryHcOpSovlpTXpNOFwTpzJvud11TQg== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--10.376300-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.1006-28202.000 X-TM-SNTS-SMTP: F62DC2D331C14C8C404F6E50AD7E370748A63B0994E5E6315622B90F8C6494692000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: -4.2 (----) X-Debbugs-Envelope-To: submit Cc: nafkhamdc X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -5.2 (-----) * gnu/packages/bioinformatics.scm (python-ega-download-client): Update to 5.1.0. Change-Id: I010c3a0e7cb69184b72e8b13bad04ff2fd364f5a --- gnu/packages/bioinformatics.scm | 26 ++++++++++++++------------ 1 file changed, 14 insertions(+), 12 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 85507b6c15..00a20aa4fc 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2541,18 +2541,20 @@ (define-public python-ega-download-client (build-system pyproject-build-system) (arguments (list - #:test-flags - '(list "-k" - ;; These tests fail because they require internet access. - (string-append "not test_download.py" - " and not test_htsget.py" - " and not test_commands.py")) - #:phases - '(modify-phases %standard-phases - (add-after 'unpack 'relax-requirements - (lambda _ - (substitute* "setup.py" - (("==") ">="))))))) + #:test-flags '(list "-k" + ;; These tests fail because they require internet access. + (string-append "not test_download.py" + " and not test_htsget.py" + " and not test_commands.py" + ;; The following 2 tests are failing with MaxRetriesReachedError + " and not test_download_file.py" + " and not test_download_file.py")) + #:phases '(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + (("==") + ">="))))))) (propagated-inputs (list python-htsget python-psutil python-requests python-tqdm python-urllib3)) (native-inputs (list python-coverage python-pytest python-pyfakefs base-commit: 052ef145215d45e1fe0e179df3b8c9626e021c2b -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Mar 07 13:38:13 2024 Received: (at 69273-done) by debbugs.gnu.org; 7 Mar 2024 18:38:13 +0000 Received: from localhost ([127.0.0.1]:54880 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1riIdA-0007Q9-Se for submit@debbugs.gnu.org; Thu, 07 Mar 2024 13:38:13 -0500 Received: from hera.aquilenet.fr ([185.233.100.1]:49326) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1riId4-0007PU-TN for 69273-done@debbugs.gnu.org; Thu, 07 Mar 2024 13:38:11 -0500 Received: from localhost (localhost [127.0.0.1]) by hera.aquilenet.fr (Postfix) with ESMTP id 394491349; Thu, 7 Mar 2024 19:37:29 +0100 (CET) X-Virus-Scanned: Debian amavisd-new at hera.aquilenet.fr Received: from hera.aquilenet.fr ([127.0.0.1]) by localhost (hera.aquilenet.fr [127.0.0.1]) (amavisd-new, port 10024) with ESMTP id BbTNnx4sbwh0; Thu, 7 Mar 2024 19:37:28 +0100 (CET) Received: from jurong (unknown [IPv6:2001:861:c4:f2f0::c64]) by hera.aquilenet.fr (Postfix) with ESMTPSA id 0E1132A5; Thu, 7 Mar 2024 19:37:28 +0100 (CET) Date: Thu, 7 Mar 2024 19:37:21 +0100 From: Andreas Enge To: 69273-done@debbugs.gnu.org Subject: Close Message-ID: MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 69273-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) The patch does not update the package, we are already at this version. Also it does not actually apply. Actually it looks as if the tests to be disabled by this patch have already been disabled in a different commit. So I am closing this bug, thanks! Andreas From unknown Sun Jun 22 07:54:25 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 05 Apr 2024 11:24:31 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator