Subject: bug#68934: closed (Closing this bug)

From: [email-masked] (GNU bug Tracking System)
Date: Mon, 05 Feb 2024 11:14:02 +0000

Your bug report

#68934: [PATCH] Removed this package because there is a newer version in carn.scm

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
68934: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=68934
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: Closing this bug
From: "[email-masked]" <[email-masked]>
To: "[email-masked]" <[email-masked]>
Date: Mon, 5 Feb 2024 11:10:41 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

This package is actually different than the package in cran.scm . Hence, it should not be removed from bioinformatics.scm

Thanks!

- -  

Navid Afkhami

High Performance Computing (HPC)

Max Delbrück Center for Molecular Medicine (MDC)

Robert-Rössle-Straße 10, 13125 Berlin

Phone: +49 30 9406 1316

Email:   [email-masked]

Subject: [PATCH] Removed this package because there is a newer version in carn.scm
From: nafkhamdc <[email-masked]>
To: <[email-masked]>
Cc: nafkhamdc <[email-masked]>
Date: Mon, 5 Feb 2024 10:56:14 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

Change-Id: I3effe7c3118a3ae447243239464cc1fe7f10e637
---
 gnu/packages/bioinformatics.scm | 33 ---------------------------------
 1 file changed, 33 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4db6987763..56709c0332 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11134,39 +11134,6 @@ (define-public r-projectils
 states in the the context of known, reference states.")
       (license license:gpl3))))
 
-(define-public r-presto
-  (let ((commit "052085db9c88aa70a28d11cc58ebc807999bf0ad")
-        (revision "0"))
-    (package
-      (name "r-presto")
-      (version (git-version "1.0.0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/immunogenomics/presto")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1c3fmag4r4p2lvbvxlxyck9dvfw1prbwcl9665mmlx4a35750hk8"))))
-      (properties `((upstream . "presto")))
-      (build-system r-build-system)
-      (propagated-inputs
-       (list r-data-table
-             r-deseq2
-             r-dplyr
-             r-matrix
-             r-rcpp
-             r-rcpparmadillo
-             r-reshape2
-             r-rlang
-             r-tidyr))
-      (home-page "https://github.com/immunogenomics/presto")
-      (synopsis "Fast Functions for Differential Expression using Wilcox and AUC")
-      (description "This package performs a fast Wilcoxon rank sum test and
-auROC analysis.")
-      (license license:gpl3))))
-
 (define-public r-sccustomize
   (let ((commit "397374590dae2ccc0c560897dcd1ce4382c18798")
         (revision "1"))

base-commit: 5a806face508cdfcd91e1eb1afb3ec38c002ec92
prerequisite-patch-id: 3a59afadab83198b19921e19197e26925523b4a3
-- 
2.34.1