From unknown Sun Sep 07 16:50:25 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#68705] [PATCH] gnu: python-pyro-ppl: Fix build. Resent-From: Sharlatan Hellseher Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Thu, 25 Jan 2024 02:58:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 68705 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 68705@debbugs.gnu.org Cc: Sharlatan Hellseher X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.170615146729760 (code B ref -1); Thu, 25 Jan 2024 02:58:01 +0000 Received: (at submit) by debbugs.gnu.org; 25 Jan 2024 02:57:47 +0000 Received: from localhost ([127.0.0.1]:46961 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rSpw2-0007jv-Ht for submit@debbugs.gnu.org; Wed, 24 Jan 2024 21:57:47 -0500 Received: from lists.gnu.org ([2001:470:142::17]:47908) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rSpvz-0007jg-G5 for submit@debbugs.gnu.org; Wed, 24 Jan 2024 21:57:44 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rSpvo-0000Hu-5n for guix-patches@gnu.org; Wed, 24 Jan 2024 21:57:32 -0500 Received: from mail-wr1-x430.google.com ([2a00:1450:4864:20::430]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rSpvm-0002Gn-Bz for guix-patches@gnu.org; Wed, 24 Jan 2024 21:57:31 -0500 Received: by mail-wr1-x430.google.com with SMTP id ffacd0b85a97d-33924df7245so4677466f8f.0 for ; Wed, 24 Jan 2024 18:57:29 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1706151448; x=1706756248; darn=gnu.org; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:from:to:cc:subject:date:message-id:reply-to; bh=zneKz0zRiqkp6G3R/6P9N4CbYVtaG6WLf7ojnAKCw3I=; b=J4U18DYdPz9d7lzsN7g1FLk8hBSAJkqRa3bbe3MtnqdX0b3ysidQyzEgTZgLEFh+/8 rAClfur6kOisjW8fsLUY4u3dWZxKWnoENCCk3Jf5dwpv9HEwf9Rv1T6bVjtsy8LFvRpE naKLA5saa57QfHN2EJJYvGzvdL/uwSGy8BcridQYywptekDNhrzeDU4267VFdORSSF/4 5lFaV+RqHlKanrADYdLJFsaAdL6eiCwN8GM248u1rNjwfPOqnk9Eon1v6mZqxqfGRHCq sbt7bOq1DcsOwyDDKMI4D2UqFpJcZJM3njqHk4BPunN/A9FeGuII9FWLDXG5qnKNZ4QF K48A== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1706151448; x=1706756248; h=content-transfer-encoding:mime-version:message-id:date:subject:cc :to:from:x-gm-message-state:from:to:cc:subject:date:message-id :reply-to; bh=zneKz0zRiqkp6G3R/6P9N4CbYVtaG6WLf7ojnAKCw3I=; b=hjVXAOYhIjlbac7RaIExM0pWV0KUAkB0IolDmBs8L66HSEU5V+vBuHkHOxTfibrfEG U1tVTWcRyfIw0Y2gXrFF7Vpq2i1DDqLXyRJeap2EqvICN2m30CvURxnRHnTS2BlYyQiA BXiJGR0t0qmELrJSSwXFcKdziskaLZsdRq3qIAZ1Lc4I9MJi9RiK+XEQkV1cLIpVtXZ7 kd4f0D+K+Vu5HfButni9ahSWlcXf2P+HSck9VeYgNeuqOYMoOwe4qgFsSFck0pB5BIfp 04w9akIOjPel5lj4nBSVLsDsL1rchFLDksyP3zhNehVgkEv1ZFB81MdjmGQMfleZHbuH VR6w== X-Gm-Message-State: AOJu0Yy6rABSIgK9IrtbIBQArJ2RhNC5Cdtu3DpomZF6PN7J9GdiUztj QY+rz4H4cVvq5cYvzlB99iwQnoel2yBk0n1tQrT6oAFx9oj8NbF7R3hDNt7G25k= X-Google-Smtp-Source: AGHT+IEM1KrgLuwBUIkrMzMmFtTM7IfRNeut01t6oqggLfXl2iMvOhhgHAfHJjZF1xrYZz496F8EqQ== X-Received: by 2002:adf:fec4:0:b0:337:c715:ec96 with SMTP id q4-20020adffec4000000b00337c715ec96mr131432wrs.42.1706151448334; Wed, 24 Jan 2024 18:57:28 -0800 (PST) Received: from localhost.localdomain (cpc100856-bagu15-2-0-cust368.1-3.cable.virginm.net. [82.25.93.113]) by smtp.gmail.com with ESMTPSA id q9-20020adff789000000b00337d6aa3912sm16454401wrp.10.2024.01.24.18.57.27 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 24 Jan 2024 18:57:27 -0800 (PST) From: Sharlatan Hellseher Date: Thu, 25 Jan 2024 02:57:22 +0000 Message-ID: <855120109fbfca89477c25ad75004cb7ff0b4170.1706151403.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::430; envelope-from=sharlatanus@gmail.com; helo=mail-wr1-x430.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) As seen in https://ci.guix.gnu.org/build/3347962/log/raw. * gnu/packages/machine-learning.scm (python-pyro-ppl): Fix build by disable more failing tests. [build-system]: Swap to pyproject-build-system. [arguments]: Refactor to use <#:test-flags> instead of custom 'check phase. Add "-n" flag to pytest to accelerate tests. Silent more failing tests. Change-Id: Ia1069dee9e7e9534f694e01a847ae27d7a787391 --- gnu/packages/machine-learning.scm | 37 +++++++++++++++++-------------- 1 file changed, 20 insertions(+), 17 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 5ae210f375..4757cd7265 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -22,6 +22,7 @@ ;;; Copyright © 2023 Navid Afkhami ;;; Copyright © 2023 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2023 Troy Figiel +;;; Copyright © 2043 Sharlatan Hellseher ;;; ;;; This file is part of GNU Guix. ;;; @@ -4848,24 +4849,26 @@ (define-public python-pyro-ppl (file-name (git-file-name name version)) (sha256 (base32 "0n1vsih99pvswcaygdxkc6kq6r48ny130z6ca8pp3281396r2ykw")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - ;; This tests features that are only implemented when non-free - ;; software is available (Intel MKL or CUDA). - (for-each delete-file - (list "tests/distributions/test_spanning_tree.py" - "tests/infer/mcmc/test_mcmc_api.py")) - - ;; Four test_gamma_elbo tests fail with bad values for unknown - ;; reasons. - (delete-file "tests/distributions/test_rejector.py") - ;; This test fails sometimes. - (delete-file "tests/optim/test_optim.py") - (invoke "pytest" "-vv" "--stage=unit")))))) + (list + ;; Tests take about 45min to pass. + #:test-flags + #~(list + "--stage=unit" + "-n" (number->string (parallel-job-count)) + ;; This tests features that are only implemented when non-free + ;; software is available (Intel MKL or CUDA). + "--ignore=tests/distributions/test_spanning_tree.py" + "--ignore=tests/infer/mcmc/test_mcmc_api.py" + ;; Four test_gamma_elbo tests fail with bad values for unknown + ;; reasons. + "--ignore=tests/distributions/test_rejector.py" + ;; This test fails sometimes. + "--ignore=tests/optim/test_optim.py" + ;; Failing scipy: TypeError: unsupported operand type(s) for -: + ;; 'function' and 'int'. + "--ignore=tests/distributions/test_stable.py"))) (propagated-inputs (list python-numpy python-opt-einsum base-commit: ffa73f8ef2a6cb2b93deb38b1c88a94707e7d907 -- 2.41.0 From unknown Sun Sep 07 16:50:25 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Sharlatan Hellseher Subject: bug#68705: closed ([PATCH] gnu: python-pyro-ppl: Fix build.) Message-ID: References: <855120109fbfca89477c25ad75004cb7ff0b4170.1706151403.git.sharlatanus@gmail.com> X-Gnu-PR-Message: they-closed 68705 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 68705@debbugs.gnu.org Date: Thu, 25 Jan 2024 19:59:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1706212742-30751-1" This is a multi-part message in MIME format... ------------=_1706212742-30751-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #68705: [PATCH] gnu: python-pyro-ppl: Fix build. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 68705@debbugs.gnu.org. --=20 68705: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D68705 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1706212742-30751-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 68705-done) by debbugs.gnu.org; 25 Jan 2024 19:58:52 +0000 Received: from localhost ([127.0.0.1]:49293 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rT5sC-0007zb-Eh for submit@debbugs.gnu.org; Thu, 25 Jan 2024 14:58:52 -0500 Received: from mail-lf1-x12e.google.com ([2a00:1450:4864:20::12e]:60730) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rT5sA-0007zO-AP for 68705-done@debbugs.gnu.org; Thu, 25 Jan 2024 14:58:50 -0500 Received: by mail-lf1-x12e.google.com with SMTP id 2adb3069b0e04-50f11e3ba3aso10666462e87.1 for <68705-done@debbugs.gnu.org>; Thu, 25 Jan 2024 11:58:44 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1706212718; x=1706817518; darn=debbugs.gnu.org; h=to:subject:message-id:date:from:mime-version:from:to:cc:subject :date:message-id:reply-to; bh=lHN/aG1ewAfigIygVR0wUW9N77dhjfRl5M858OgAkCU=; b=Wg3dUgOMeCH4LIjuwXrQ5pMJUtlyV7gRR40HvISkgT4vNommYtk6Ym+qVaqnSuzesA qAOcNAdlX8LANA8sbI0UcoJmFIFUDlopranz6S3rkRpRNsqWTjFPkCB/28dep4vRRQoR aiRNl4KwsDY0P6WNkE4s4ea0DWbmwdZNrnhT72irtXQOzk+Vn5rgbEAfSunkGf5yC8Pd FQsM5TK1giTI90TJGZyqRwnLIGqGPTKojnx5BUyvhkM5cBE7+RkJCYXP/cgGtT+LZn+q E1pYObjBzgqzR+zYnzM3cEAo33c84RQGXXHN3LCPTeayk1yIDdIlwZVMwpjVy6DuAMAh vdjw== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1706212718; x=1706817518; h=to:subject:message-id:date:from:mime-version:x-gm-message-state :from:to:cc:subject:date:message-id:reply-to; bh=lHN/aG1ewAfigIygVR0wUW9N77dhjfRl5M858OgAkCU=; b=i2nSHpqD7hGpREDfQbjBNTmTdjfRq+sb8UqjlM/XAI9V1C4aEaLOp21eMogkpUjflN P0ixehBItlYWC7bvXfjXKv5D228Hvbf//HSqiXtrVafWidM7UN4FQW+yygsGJhoyBY+R QWXcrmPllI07K8PUWvfG+tFtptPTh07esp7Q4qo8p4jZHkHQ+gyyJ3K1quYf4r3xYjpe GKHtKGu5dkBP92+UtUT2duSg/qnVG9eEeWDbvK7aLARFa5hz8DdFXojhT7JcOto3lSql D5qn8tX9hCZITjEBAfQaEAsoYzJMj7v9Qeq2CI3z3TK1sa2M+lrnaFkzaJGH//SRLZS2 qEnA== X-Gm-Message-State: AOJu0YwVikFpGwRT5j/DnjNNI2WqCh2zMpzuz9I3Zb8iZoIbRcLmYioq tf8B55UF917gS0hE41WAjT4dIp0C7FqWeMDxF3t43lu+uD7UD1NCLzQDUFkVponBB9jvvo8ts4I IQLq8Jqwv4z3evLBsFnyxnGQy8mNeh2cvTr0= X-Google-Smtp-Source: AGHT+IGG+/haU1SkU77b54JJW6AZnykWJxvt2lE+bIIVm4uo25d/YmNEhghppXD11DwNvoZLAvfN5yHx+L5JsE5GOB0= X-Received: by 2002:ac2:47e6:0:b0:510:c73:631b with SMTP id b6-20020ac247e6000000b005100c73631bmr325609lfp.19.1706212717765; Thu, 25 Jan 2024 11:58:37 -0800 (PST) MIME-Version: 1.0 From: Sharlatan Hellseher Date: Thu, 25 Jan 2024 19:58:27 +0000 Message-ID: Subject: [PATCH] gnu: python-pyro-ppl: Fix build. 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[82.25.93.113]) by smtp.gmail.com with ESMTPSA id q9-20020adff789000000b00337d6aa3912sm16454401wrp.10.2024.01.24.18.57.27 (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Wed, 24 Jan 2024 18:57:27 -0800 (PST) From: Sharlatan Hellseher To: guix-patches@gnu.org Subject: [PATCH] gnu: python-pyro-ppl: Fix build. Date: Thu, 25 Jan 2024 02:57:22 +0000 Message-ID: <855120109fbfca89477c25ad75004cb7ff0b4170.1706151403.git.sharlatanus@gmail.com> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Received-SPF: pass client-ip=2a00:1450:4864:20::430; envelope-from=sharlatanus@gmail.com; helo=mail-wr1-x430.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: Sharlatan Hellseher X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) As seen in https://ci.guix.gnu.org/build/3347962/log/raw. * gnu/packages/machine-learning.scm (python-pyro-ppl): Fix build by disable more failing tests. [build-system]: Swap to pyproject-build-system. [arguments]: Refactor to use <#:test-flags> instead of custom 'check phase. Add "-n" flag to pytest to accelerate tests. Silent more failing tests. Change-Id: Ia1069dee9e7e9534f694e01a847ae27d7a787391 --- gnu/packages/machine-learning.scm | 37 +++++++++++++++++-------------- 1 file changed, 20 insertions(+), 17 deletions(-) diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 5ae210f375..4757cd7265 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -22,6 +22,7 @@ ;;; Copyright © 2023 Navid Afkhami ;;; Copyright © 2023 Zheng Junjie <873216071@qq.com> ;;; Copyright © 2023 Troy Figiel +;;; Copyright © 2043 Sharlatan Hellseher ;;; ;;; This file is part of GNU Guix. ;;; @@ -4848,24 +4849,26 @@ (define-public python-pyro-ppl (file-name (git-file-name name version)) (sha256 (base32 "0n1vsih99pvswcaygdxkc6kq6r48ny130z6ca8pp3281396r2ykw")))) - (build-system python-build-system) + (build-system pyproject-build-system) (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'check - (lambda* (#:key tests? #:allow-other-keys) - ;; This tests features that are only implemented when non-free - ;; software is available (Intel MKL or CUDA). - (for-each delete-file - (list "tests/distributions/test_spanning_tree.py" - "tests/infer/mcmc/test_mcmc_api.py")) - - ;; Four test_gamma_elbo tests fail with bad values for unknown - ;; reasons. - (delete-file "tests/distributions/test_rejector.py") - ;; This test fails sometimes. - (delete-file "tests/optim/test_optim.py") - (invoke "pytest" "-vv" "--stage=unit")))))) + (list + ;; Tests take about 45min to pass. + #:test-flags + #~(list + "--stage=unit" + "-n" (number->string (parallel-job-count)) + ;; This tests features that are only implemented when non-free + ;; software is available (Intel MKL or CUDA). + "--ignore=tests/distributions/test_spanning_tree.py" + "--ignore=tests/infer/mcmc/test_mcmc_api.py" + ;; Four test_gamma_elbo tests fail with bad values for unknown + ;; reasons. + "--ignore=tests/distributions/test_rejector.py" + ;; This test fails sometimes. + "--ignore=tests/optim/test_optim.py" + ;; Failing scipy: TypeError: unsupported operand type(s) for -: + ;; 'function' and 'int'. + "--ignore=tests/distributions/test_stable.py"))) (propagated-inputs (list python-numpy python-opt-einsum base-commit: ffa73f8ef2a6cb2b93deb38b1c88a94707e7d907 -- 2.41.0 ------------=_1706212742-30751-1--