From unknown Mon Jun 16 23:50:40 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#68562 <68562@debbugs.gnu.org> To: bug#68562 <68562@debbugs.gnu.org> Subject: Status: [PATCH 0/2] Fix python-plotnine build Reply-To: bug#68562 <68562@debbugs.gnu.org> Date: Tue, 17 Jun 2025 06:50:40 +0000 retitle 68562 [PATCH 0/2] Fix python-plotnine build reassign 68562 guix-patches submitter 68562 Troy Figiel severity 68562 normal tag 68562 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Thu Jan 18 05:05:13 2024 Received: (at submit) by debbugs.gnu.org; 18 Jan 2024 10:05:14 +0000 Received: from localhost ([127.0.0.1]:54362 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rQPGr-0001oR-Ka for submit@debbugs.gnu.org; Thu, 18 Jan 2024 05:05:13 -0500 Received: from lists.gnu.org ([2001:470:142::17]:53736) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rQPGo-0001oA-To for submit@debbugs.gnu.org; Thu, 18 Jan 2024 05:05:11 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rQPGh-0008NQ-7i for guix-patches@gnu.org; Thu, 18 Jan 2024 05:05:03 -0500 Received: from mout-p-202.mailbox.org ([80.241.56.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_CHACHA20_POLY1305:256) (Exim 4.90_1) (envelope-from ) id 1rQPGZ-0001v0-51 for guix-patches@gnu.org; Thu, 18 Jan 2024 05:05:02 -0500 Received: from smtp1.mailbox.org (smtp1.mailbox.org [10.196.197.1]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-202.mailbox.org (Postfix) with ESMTPS id 4TFyyt3yLTz9sZ5 for ; Thu, 18 Jan 2024 11:04:38 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=troyfigiel.com; s=MBO0001; t=1705572278; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=aHX5nLqTWTzuIim28S/rKE/fn1pSHpeaiinCSmCcLwU=; b=j3menyoYXcIBn6DYKN8qZY6NBHbKMfxQ4jmWtEBmEuWIpUg4lEaTHYh9Yrb1ZfRdt4mpBA vhMKcP8IMviC/wF9zwA0LH9Bf8EkzoFP8XZWq/1ZIi6Qmqblygd0+dIvnFSXrzZ0dEGjzN ABFZu6q7/RKZBn+CNyl9g5/3P6uu5b+jmEZQcid3+WF/EOKUS2cvjnQeKUiSxnvsSyS73R Dgfbc5D3o8j5+/5Uy4H7N9LjAzQkq3mpkRxDQbR28LqSWbUhvo5wAPO/CTguC7+5yamG37 A0pRsSsxccyHXWQmxdQK2tMJA58to2BLlKasicLjfDrJ8kqe3Buads8rVyiHZw== From: Troy Figiel To: guix-patches@gnu.org Subject: [PATCH 0/2] Fix python-plotnine build Date: Thu, 18 Jan 2024 11:01:07 +0100 Message-ID: <87v87rt0su.fsf@troyfigiel.com> MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=80.241.56.172; envelope-from=troy@troyfigiel.com; helo=mout-p-202.mailbox.org X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_LOW=-0.7, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) I checked manually and the images look very similar again. It seems the letters in the image are shifted slightly to the right as compared to the expectation, which could be caused by different versions of Guix dependencies as compared to the upstream project. I am aware we can upgrade this package, but doing so will break a bunch more tests. I would like to at least have a buildable package for now. Troy Figiel (2): gnu: python-plotnine: Fix build. gnu: python-plotnine: Reformat with guix style. gnu/packages/python-science.scm | 152 ++++++++++++++++---------------- 1 file changed, 76 insertions(+), 76 deletions(-) base-commit: c49957de727746df47e0f0b86bc1c797e68167e6 -- 2.42.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Jan 18 05:08:21 2024 Received: (at 68562) by debbugs.gnu.org; 18 Jan 2024 10:08:21 +0000 Received: from localhost ([127.0.0.1]:54368 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rQPJt-0001tw-74 for submit@debbugs.gnu.org; Thu, 18 Jan 2024 05:08:21 -0500 Received: from mout-p-103.mailbox.org ([2001:67c:2050:0:465::103]:45540) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rQPJq-0001tf-Hl for 68562@debbugs.gnu.org; Thu, 18 Jan 2024 05:08:19 -0500 Received: from smtp102.mailbox.org (smtp102.mailbox.org [IPv6:2001:67c:2050:b231:465::102]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-103.mailbox.org (Postfix) with ESMTPS id 4TFz2w4LGTz9sSH for <68562@debbugs.gnu.org>; Thu, 18 Jan 2024 11:08:08 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=troyfigiel.com; s=MBO0001; t=1705572488; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=jYjfwsEujpafeabFRlSsrw2Q91X9XTceZnqMwkhPBRk=; b=Yw7j6TYhlRBCxfxSTnB2kD8NK1EFMfiNItxD2qR/nFNC6g3oXVXD2LWYpkJLOjp9kbp3Rg B6r7Y2BmbrEt/OkoUeHrY73lJjHZH3GvlmTD98n5GDIa73MYdOmQ5WDO5r2jRCg03SvE0J vJ33VBKq7OnP+qP8CrpwcJwJTyK14F9G1ZyA8jXRthOoHEBMY+swD54PwL5Cb7iRjNTK37 YrmHTP3ejKb8EsEX91b6zTf3i2M+LmSUAI6kn1kybWYSTCx6L0T5Wuj0AP+mePOLyr4C8c bGfM1Dh/5B6+BhW1OBvpFssqCY8Du5pjWel71/Vetzc0eLzSZK65Qr+hGVXGNg== From: Troy Figiel To: 68562@debbugs.gnu.org Subject: [PATCH 1/2] gnu: python-plotnine: Fix build. Date: Thu, 18 Jan 2024 10:43:42 +0100 Message-ID: <87ttnbt0mw.fsf@troyfigiel.com> MIME-Version: 1.0 Content-Type: text/plain X-Rspamd-Queue-Id: 4TFz2w4LGTz9sSH X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 68562 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) * gnu/packages/python-science.scm (python-plotnine): Fix build. [arguments]<#:test-flags>: Add test_custom_shape to ignored tests. --- gnu/packages/python-science.scm | 1 + 1 file changed, 1 insertion(+) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index c57fd1f23c..005ef6b016 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1774,6 +1774,7 @@ (define-public python-plotnine "test_continuous_x_fullrange" "test_coord_trans_backtransforms" "test_coord_trans_se_false" + "test_custom_shape" "test_datetime_scale_limits" "test_dir_v_ncol" "test_discrete_x" -- 2.42.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Jan 18 05:09:06 2024 Received: (at 68562) by debbugs.gnu.org; 18 Jan 2024 10:09:06 +0000 Received: from localhost ([127.0.0.1]:54373 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rQPKb-0001vk-Gn for submit@debbugs.gnu.org; Thu, 18 Jan 2024 05:09:06 -0500 Received: from mout-p-201.mailbox.org ([2001:67c:2050:0:465::201]:39720) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rQPKZ-0001v3-0H for 68562@debbugs.gnu.org; Thu, 18 Jan 2024 05:09:04 -0500 Received: from smtp202.mailbox.org (smtp202.mailbox.org [10.196.197.202]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-201.mailbox.org (Postfix) with ESMTPS id 4TFz3n02lsz9sWQ for <68562@debbugs.gnu.org>; Thu, 18 Jan 2024 11:08:53 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=troyfigiel.com; s=MBO0001; t=1705572533; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=EhJVaE7o4caeFcC9W/BJpCm2ywa83wBgWCtXm5S3uXI=; b=r2ZbhRGSohjaqrYnHvbUNKTTTnP6fcIZgftC4YHe/a5Ff+pnuxcyAyUzEwkdRLBtOZyRua cXdFNrTk27sIu5zI8tovf/sg1FNCHg47nkVlpKWJJ/E2OpeE5jLjzZF7M6jGRISZKrDlfi RwoJzckXVnKhRyVkjy9ke1rZsCGG3KvD3TG1ZwYNNNmt5sfo729NpXj5RAEhXiOy9E+d1v HfIVDwICB4bynS2t6UB6ML3o4ykEnFWFN46qkE7gpIRUN4abVc4RWCI+NrZzr60qPEZHmT Is4FJnlwA5PK71Qvhir7I7njshDEu7bpURscuOVmGqEIU4f8zntnJocRRlsIHQ== From: Troy Figiel To: 68562@debbugs.gnu.org Subject: [PATCH 2/2] gnu: python-plotnine: Reformat with guix style. Date: Thu, 18 Jan 2024 10:54:58 +0100 Message-ID: <87sf2vt0ln.fsf@troyfigiel.com> MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: -0.7 (/) X-Debbugs-Envelope-To: 68562 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.7 (-) * gnu/packages/python-science.scm (python-plotnine): Reformat with guix style. --- gnu/packages/python-science.scm | 153 ++++++++++++++++---------------- 1 file changed, 76 insertions(+), 77 deletions(-) diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm index 005ef6b016..6bdfeeb340 100644 --- a/gnu/packages/python-science.scm +++ b/gnu/packages/python-science.scm @@ -1744,89 +1744,88 @@ (define-public python-plotnine ;; XXX Version 0.12.x exists, but we can't build it because we're still at ;; matplotlib 3.5. We'd need at least 3.6. (version "0.10.1") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/has2k1/plotnine") - (commit (string-append "v" version)))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0lg53wcm00lj8zbb4q9yj4a0n0fqaqq7c7vj18bda0k56gg0fpwl")))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/has2k1/plotnine") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0lg53wcm00lj8zbb4q9yj4a0n0fqaqq7c7vj18bda0k56gg0fpwl")))) (build-system pyproject-build-system) (arguments (list #:test-flags ;; These all fail because the images are considered to be too different, ;; though they really do look fine. - '(list "-k" (string-append - "not TestThemes" - (string-join - (list - ;; Image tests - "test_adjust_text" - "test_annotation_logticks_coord_flip_discrete" - "test_annotation_logticks_faceting" - "test_arrow" - "test_aslabeller_dict_0tag" - "test_caption_simple" - "test_continuous_x" - "test_continuous_x_fullrange" - "test_coord_trans_backtransforms" - "test_coord_trans_se_false" - "test_custom_shape" - "test_datetime_scale_limits" - "test_dir_v_ncol" - "test_discrete_x" - "test_discrete_x_fullrange" - "test_facet_grid_drop_false" - "test_facet_grid_expression" - "test_facet_grid_space_ratios" - "test_facet_wrap" - "test_facet_wrap_expression" - "test_facet_wrap_label_both" - "test_label_context_wrap2vars" - "test_labeller_cols_both_grid" - "test_labeller_cols_both_wrap" - "test_labeller_towords" - "test_missing_data_discrete_scale" - "test_ribbon_facetting" - "test_stack_non_linear_scale" - "test_uneven_num_of_lines" - - ;; Missing optional modules - "test_non_linear_smooth" - "test_non_linear_smooth_no_ci") - " and not " 'prefix))) - #:phases - '(modify-phases %standard-phases - (add-before 'check 'pre-check - (lambda* (#:key inputs outputs #:allow-other-keys) - ;; The data files are referenced by the tests but they are not - ;; installed. - (copy-recursively "plotnine/data" - (string-append (site-packages inputs outputs) - "/plotnine/data")) - ;; Matplotlib needs to be able to write its configuration file - ;; somewhere. - (setenv "MPLCONFIGDIR" "/tmp") - (setenv "TZ" "UTC") - (setenv "TZDIR" - (search-input-directory inputs "share/zoneinfo"))))))) - (propagated-inputs - (list python-adjusttext - python-matplotlib - python-mizani - python-numpy - python-patsy - python-scipy - python-statsmodels)) - (native-inputs - (list python-geopandas - python-mock - python-pandas - python-pytest python-pytest-cov - tzdata-for-tests)) + '(list "-k" + (string-append "not TestThemes" + (string-join (list + ;; Image tests + "test_adjust_text" + "test_annotation_logticks_coord_flip_discrete" + "test_annotation_logticks_faceting" + "test_arrow" + "test_aslabeller_dict_0tag" + "test_caption_simple" + "test_continuous_x" + "test_continuous_x_fullrange" + "test_coord_trans_backtransforms" + "test_coord_trans_se_false" + "test_custom_shape" + "test_datetime_scale_limits" + "test_dir_v_ncol" + "test_discrete_x" + "test_discrete_x_fullrange" + "test_facet_grid_drop_false" + "test_facet_grid_expression" + "test_facet_grid_space_ratios" + "test_facet_wrap" + "test_facet_wrap_expression" + "test_facet_wrap_label_both" + "test_label_context_wrap2vars" + "test_labeller_cols_both_grid" + "test_labeller_cols_both_wrap" + "test_labeller_towords" + "test_missing_data_discrete_scale" + "test_ribbon_facetting" + "test_stack_non_linear_scale" + "test_uneven_num_of_lines" + + ;; Missing optional modules + "test_non_linear_smooth" + "test_non_linear_smooth_no_ci") + " and not " + 'prefix))) + #:phases '(modify-phases %standard-phases + (add-before 'check 'pre-check + (lambda* (#:key inputs outputs #:allow-other-keys) + ;; The data files are referenced by the tests but they are not + ;; installed. + (copy-recursively "plotnine/data" + (string-append (site-packages inputs + outputs) + "/plotnine/data")) + ;; Matplotlib needs to be able to write its configuration file + ;; somewhere. + (setenv "MPLCONFIGDIR" "/tmp") + (setenv "TZ" "UTC") + (setenv "TZDIR" + (search-input-directory inputs "share/zoneinfo"))))))) + (propagated-inputs (list python-adjusttext + python-matplotlib + python-mizani + python-numpy + python-patsy + python-scipy + python-statsmodels)) + (native-inputs (list python-geopandas + python-mock + python-pandas + python-pytest + python-pytest-cov + tzdata-for-tests)) (home-page "https://github.com/has2k1/plotnine") (synopsis "Grammar of Graphics for Python") (description -- 2.42.0 From debbugs-submit-bounces@debbugs.gnu.org Thu Jan 18 16:08:48 2024 Received: (at 68562-done) by debbugs.gnu.org; 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