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Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060 --- gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7c4272f8be..e4021fe756 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6003,6 +6003,27 @@ (define-public r-deconstructsigs closely reconstructs the mutational profile.") (license license:gpl2+))) +(define-public r-jaspar2020 + (package + (name "r-jaspar2020") + (version "0.99.10") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "JASPAR2020" version + 'annotation)) + (sha256 + (base32 "0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr")))) + (properties `((upstream-name . "JASPAR2020"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://jaspar.elixir.no/") + (synopsis "Data package for JASPAR database (version 2020)") + (description "Data package for JASPAR2020. +To explore these databases, utilize the TFBSTools +package (version 1.23.1 or higher).") + (license license:gpl2))) + ;; This is a CRAN package, but it depends on Bioconductor packages. (define-public r-jetset (package base-commit: 537768018ee03a6a9a5562022a16b47ac287d131 prerequisite-patch-id: 103e1e7922398cbadee6250d96974c6b8ca89fdb -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Wed Jan 10 12:51:35 2024 Received: (at 68371-done) by debbugs.gnu.org; 10 Jan 2024 17:51:35 +0000 Received: from localhost ([127.0.0.1]:42939 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rNcjn-0002r1-9D for submit@debbugs.gnu.org; Wed, 10 Jan 2024 12:51:35 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21002) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rNcjm-0002qt-AP for 68371-done@debbugs.gnu.org; Wed, 10 Jan 2024 12:51:34 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1704909094; cv=none; d=zohomail.com; s=zohoarc; b=bhJ9FCzTClOm17dPPew/R9LNSkvVni5+5Y7DC8voxkIN6PZTVQtIkjbsH3nJLKcojbt22pDM7yWLTUExkGuzyMA99qUETfet64Mqlm5WrcW8H+1x8L7uhRyrXdTmyQ4/QX1QtPd70D0GDZB64G1iyxXbaMW2wGLgffc3UYX1ApY= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1704909094; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=CfeFIF08Fs/oUJ57n0uZp/bBEsgEWxqmuGr9qpecbvg=; b=mqfwTJeV4XZ2xeHdnlkni/etFgAP7igBQSycETFR7MOrxeKgmAdxFXd5H6sGBGTqhh8l458rH1t+QsshvHVjRnjJvnE56ALH+bEVzWyEx8WuC+GwEjhRE34h26UNPTxeMmNL8rSMcXN21SOrvF/erx3jeTR5qDtU/eiSrEbLYCY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1704909094; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=CfeFIF08Fs/oUJ57n0uZp/bBEsgEWxqmuGr9qpecbvg=; b=C9xin03fDpliXToPMDrnGbgp4DHPVvqOGrzZSIEpY4SRLRwpJrTsUQvZPBJptDDx x73NO+TgR3PrzvHMFiZKLAm5EHVjPQ9RKOfW/KEuegelb32/wtpUaFlKXUGgPVhyPHg a/YyEAiOtB/Bqr0bAmvLND91QdWTiF/+FxCVsQ10= Received: from localhost (103-108-142-46.pool.kielnet.net [46.142.108.103]) by mx.zohomail.com with SMTPS id 1704909092968572.3549868193986; Wed, 10 Jan 2024 09:51:32 -0800 (PST) User-agent: mu4e 1.10.8; emacs 29.1 From: Ricardo Wurmus To: 68371-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-jaspar2020. Date: Wed, 10 Jan 2024 18:50:57 +0100 Message-ID: <87edep5b6l.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 68371-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thanks! Note that I moved this to the Annotations section at the beginning of the file. -- Ricardo From unknown Tue Jun 17 01:47:37 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Thu, 08 Feb 2024 12:24:15 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator