GNU bug report logs - #68371
[PATCH] gnu: Add r-jaspar2020.

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 68371 in the body.
You can then email your comments to 68371 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: nafkhamdc <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-jaspar2020.
Date: Wed, 10 Jan 2024 14:22:37 +0000

* gnu/packages/bioconductor.scm (r-jaspar2020): New variable.

Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
---
 gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7c4272f8be..e4021fe756 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6003,6 +6003,27 @@ (define-public r-deconstructsigs
 closely reconstructs the mutational profile.")
     (license license:gpl2+)))
 
+(define-public r-jaspar2020
+  (package
+    (name "r-jaspar2020")
+    (version "0.99.10")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "JASPAR2020" version
+                              'annotation))
+       (sha256
+        (base32 "0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"))))
+    (properties `((upstream-name . "JASPAR2020")))
+    (build-system r-build-system)
+    (native-inputs (list r-knitr))
+    (home-page "https://jaspar.elixir.no/")
+    (synopsis "Data package for JASPAR database (version 2020)")
+    (description "Data package for JASPAR2020.
+To explore these databases, utilize the TFBSTools
+package (version 1.23.1 or higher).")
+    (license license:gpl2)))
+
 ;; This is a CRAN package, but it depends on Bioconductor packages.
 (define-public r-jetset
   (package

base-commit: 537768018ee03a6a9a5562022a16b47ac287d131
prerequisite-patch-id: 103e1e7922398cbadee6250d96974c6b8ca89fdb
-- 
2.34.1

Message #10 received at 68371-done <at> debbugs.gnu.org (full text, mbox):

From: Ricardo Wurmus <rekado <at> elephly.net>
To: 68371-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add r-jaspar2020.
Date: Wed, 10 Jan 2024 18:50:57 +0100

Applied, thanks!  Note that I moved this to the Annotations section at
the beginning of the file.

-- 
Ricardo

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.