From unknown Sun Jun 15 08:52:01 2025 X-Loop: help-debbugs@gnu.org Subject: bug#68313: Build hdf5-parallel-openmpi.powerpc64le-linux on master is broken. Resent-From: Maxim Cournoyer Original-Sender: "Debbugs-submit" Resent-CC: bug-guix@gnu.org Resent-Date: Mon, 08 Jan 2024 03:20:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 68313 X-GNU-PR-Package: guix X-GNU-PR-Keywords: To: 68313@debbugs.gnu.org X-Debbugs-Original-To: bug-guix Received: via spool by submit@debbugs.gnu.org id=B.17046839755244 (code B ref -1); Mon, 08 Jan 2024 03:20:01 +0000 Received: (at submit) by debbugs.gnu.org; 8 Jan 2024 03:19:35 +0000 Received: from localhost ([127.0.0.1]:34785 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rMgAo-0001MW-SO for submit@debbugs.gnu.org; Sun, 07 Jan 2024 22:19:35 -0500 Received: from lists.gnu.org ([2001:470:142::17]:54538) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rMgAm-0001MI-Kq for submit@debbugs.gnu.org; Sun, 07 Jan 2024 22:19:33 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rMgAb-0006ne-1Y for bug-guix@gnu.org; Sun, 07 Jan 2024 22:19:21 -0500 Received: from mail-qt1-x82c.google.com ([2607:f8b0:4864:20::82c]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1rMgAZ-0000W5-3s for bug-guix@gnu.org; Sun, 07 Jan 2024 22:19:20 -0500 Received: by mail-qt1-x82c.google.com with SMTP id d75a77b69052e-427f21ced6aso13453561cf.1 for ; Sun, 07 Jan 2024 19:19:18 -0800 (PST) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20230601; t=1704683957; x=1705288757; darn=gnu.org; h=mime-version:user-agent:message-id:date:references:in-reply-to :subject:to:from:from:to:cc:subject:date:message-id:reply-to; bh=lHiqKNPrZOjsOhg5Ybb1/g4d04LsxmMlJZSMU+5yMwU=; b=O1bm5juCO8u8R//cIPY0ud0SF2Lga9DLWKQhPa3/9aUy+fanY+CKPY8NAIGYX/PMIm zWKKTheJLTzYljefj8q1C9V5Ctndwx5WUtA+MUC46/joIe6TQlnYJsRYEbrt//ad6E7i J1u9TZ5urJ20NFkF0ee7LLWfddr5gQDIwJwK/RLhx9G/Rx9QLsIem5E6hvJ6oIx3Gpp5 HTpqvgnNmAbJWsbrzKOscSpYcS1ZjveovNMMp71YJSeCcCOUWSttCNvZhypzlRKe2it3 Tg7o7VjNbHqjj+Bf+L8qtOSoG2bOjTeU1/bhJ4Od0KXdw94fE9XSL+JmmyoH2WH+l86s 3Mww== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20230601; t=1704683957; x=1705288757; h=mime-version:user-agent:message-id:date:references:in-reply-to :subject:to:from:x-gm-message-state:from:to:cc:subject:date :message-id:reply-to; bh=lHiqKNPrZOjsOhg5Ybb1/g4d04LsxmMlJZSMU+5yMwU=; b=KEjT/mjIf7SKd5mjy8NwpLQul1wJX4t+rSpmoXYPn3xBVRXz/lpTXnBdfLBMApKbVP 1VOQMIybthtevll3JSJdQyJM8gRWLuvXu3uUg2mR2LPe5bBr83cjbOnP9Ot5c3rKOaX2 ZbWCIzKcF+4al7M34tS7QnsxHAff8xqU5KbuT+pT9oPZ1GsijUevATZduhrsXwM72mwu RmE5Pvc4Q/Kqr584ybGKB9vRmA+e3IBB+R/HNidLGub91Ley+u9RwBJKhsvLp20WmRa+ B8Bg7KsEdVFjEB9pqiA6Xx/MB6Fw/W00rXbeJYJX+BH5Sc2kz956Tdjg3Qc04+zAqo0A I8Vg== X-Gm-Message-State: AOJu0YzdCXejssb0RJjrsRA/YCinDLuhtaL20ijEaNfZXgPtsNMcKMKB XhyKijdRnw7s2jf9R+Wy8Ge0Vm/+ORM= X-Google-Smtp-Source: AGHT+IGUx6JSoAHCjXaUIdnIi4siYrgTvlVk+1iTOoLTkDDIdoYWk98PkMhCTRc9LIEWdrbBhbGCIg== X-Received: by 2002:ac8:574d:0:b0:429:8afd:c722 with SMTP id 13-20020ac8574d000000b004298afdc722mr3646779qtx.112.1704683957308; Sun, 07 Jan 2024 19:19:17 -0800 (PST) Received: from hurd (dsl-156-75.b2b2c.ca. [66.158.156.75]) by smtp.gmail.com with ESMTPSA id ca8-20020a05622a1f0800b004260b65b4f7sm182164qtb.97.2024.01.07.19.19.16 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 07 Jan 2024 19:19:16 -0800 (PST) From: Maxim Cournoyer In-Reply-To: <3651@guix-ci.nnrss> (cuirass@gnu.org's message of "Sun, 07 Jan 2024 20:15:00 +0000") References: <3651@guix-ci.nnrss> Date: Sun, 07 Jan 2024 22:19:15 -0500 Message-ID: <87o7dwy0jw.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=2607:f8b0:4864:20::82c; envelope-from=maxim.cournoyer@gmail.com; helo=mail-qt1-x82c.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) Hello, cuirass@gnu.org (Cuirass) writes: >

The build hdf5-parallel-openmpi.powerpc64le-linux for specification master > is broken. You can find the detailed information about this build href="https://ci.guix.gnu.org/build/3175009/details">here.

> > https://ci.guix.gnu.org/build/3175009/details Sample output: --8<---------------cut here---------------start------------->8--- Atomicity Test Failed Process 4: read_buf[2038] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2039] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2040] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2041] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2042] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2043] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2044] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2045] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2046] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2047] is 5, should be 0 Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) All tests were successful. All tests were successful. All tests were successful. All tests were successful. All tests were successful. All tests were successful. =================================== ***PHDF5 tests detected 1040 errors*** =================================== --8<---------------cut here---------------end--------------->8--- -- Thanks, Maxim From unknown Sun Jun 15 08:52:01 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: Maxim Cournoyer Subject: bug#68313: closed (Re: [bug#72071] [PATCH 0/2] A clean series of patches) Message-ID: References: <871q2kx0go.fsf@gnu.org> <87o7dwy0jw.fsf@gmail.com> X-Gnu-PR-Message: they-closed 68313 X-Gnu-PR-Package: guix Reply-To: 68313@debbugs.gnu.org Date: Mon, 19 Aug 2024 10:39:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1724063942-30538-1" This is a multi-part message in MIME format... ------------=_1724063942-30538-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #68313: Build hdf5-parallel-openmpi.powerpc64le-linux on master is broken. which was filed against the guix package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 68313@debbugs.gnu.org. --=20 68313: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D68313 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1724063942-30538-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 68313-done) by debbugs.gnu.org; 19 Aug 2024 10:38:19 +0000 Received: from localhost ([127.0.0.1]:57712 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sfzmF-0007vQ-59 for submit@debbugs.gnu.org; Mon, 19 Aug 2024 06:38:19 -0400 Received: from mail3-relais-sop.national.inria.fr ([192.134.164.104]:10906) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1sfzmC-0007v6-2w; Mon, 19 Aug 2024 06:38:17 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=inria.fr; s=dc; h=from:to:cc:subject:in-reply-to:references:date: message-id:mime-version:content-transfer-encoding; bh=LFXe67EpbxjgM2BrLEAZWhe5JlqiGGjGAF3hDup6Kis=; b=AJAfghiDdaIigXKATYjdGuWdj0A9iALvHTfUy45LkZyyuaSj9ok6K64X vT7FB/QN/5W5ih/0yHtk/CxdgUiNMfWiZCBcEtbBJVZShOOKiYlnahy8B bedvObGZUM8pgO6XNiZcICFEasM1sT4bMfclOy5yTZnpJjgHlj3xMFByJ A=; Authentication-Results: mail3-relais-sop.national.inria.fr; dkim=none (message not signed) header.i=none; spf=SoftFail smtp.mailfrom=ludovic.courtes@inria.fr; dmarc=fail (p=none dis=none) d=inria.fr X-IronPort-AV: E=Sophos;i="6.10,158,1719871200"; d="scan'208";a="94296629" Received: from unknown (HELO ribbon) ([193.50.110.123]) by mail3-relais-sop.national.inria.fr with ESMTP/TLS/ECDHE-RSA-AES256-GCM-SHA384; 19 Aug 2024 12:37:27 +0200 From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: Luca Cirrottola Subject: Re: [bug#72071] [PATCH 0/2] A clean series of patches In-Reply-To: <20240729173604.220603-1-luca.cirrottola@inria.fr> (Luca Cirrottola's message of "Mon, 29 Jul 2024 19:36:02 +0200") References: <20240712094059.15538-1-luca.cirrottola@inria.fr> <20240729173604.220603-1-luca.cirrottola@inria.fr> Date: Mon, 19 Aug 2024 12:37:27 +0200 Message-ID: <871q2kx0go.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 68313-done Cc: 68313-done@debbugs.gnu.org, 72071-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi Luca, Luca Cirrottola skribis: > Hello Ludo', following your suggestion, I have implemented a simpler > solution that just skips off the problematic test (without moving > around files). I send a new patch series with the full modifications > to be applied to the recipe, containing one commit for the package > version update, and one commit for skipping the test. > > Let me know if it looks better (no pressure). > > Thanks, > Luca > > Luca Cirrottola (2): > Solve issue https://issues.guix.gnu.org/68313 by updating HDF5 version > to 1.14.3 (containing the official fix > https://github.com/HDFGroup/hdf5/pull/3421). > Skip test_check_version since the patch-settings phase needs to modify > the test reference file. I reorganized the changes a bit; in particular, since skipping the test is necessary for 1.14.3 to build, I squashed the upgrade and the test skip in the same commit. Also, the test change would break hdf@1.8, so I moved that to hdf@1.14. The result is: 84c62cf166 * gnu: hdf5-parallel-openmpi: Update to 1.14.x. 832f2bcb92 * gnu: hdf5@1.14: Update to 1.14.3. Tested with: ./pre-inst-env guix build --no-grafts \ hdf5@1.8 hdf5@1.14 hdf5-parallel-openmpi hdf5@1.10 Thanks! 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[66.158.156.75]) by smtp.gmail.com with ESMTPSA id ca8-20020a05622a1f0800b004260b65b4f7sm182164qtb.97.2024.01.07.19.19.16 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sun, 07 Jan 2024 19:19:16 -0800 (PST) From: Maxim Cournoyer To: bug-guix Subject: Re: Build hdf5-parallel-openmpi.powerpc64le-linux on master is broken. In-Reply-To: <3651@guix-ci.nnrss> (cuirass@gnu.org's message of "Sun, 07 Jan 2024 20:15:00 +0000") References: <3651@guix-ci.nnrss> Date: Sun, 07 Jan 2024 22:19:15 -0500 Message-ID: <87o7dwy0jw.fsf@gmail.com> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=2607:f8b0:4864:20::82c; envelope-from=maxim.cournoyer@gmail.com; helo=mail-qt1-x82c.google.com X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) Hello, cuirass@gnu.org (Cuirass) writes: >

The build hdf5-parallel-openmpi.powerpc64le-linux for specification master > is broken. You can find the detailed information about this build href="https://ci.guix.gnu.org/build/3175009/details">here.

> > https://ci.guix.gnu.org/build/3175009/details Sample output: --8<---------------cut here---------------start------------->8--- Atomicity Test Failed Process 4: read_buf[2038] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2039] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2040] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2041] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2042] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2043] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2044] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2045] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2046] is 5, should be 0 Atomicity Test Failed Process 4: read_buf[2047] is 5, should be 0 Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Store Dense Attributes (denseattr) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective Metadata read with some ranks having no selection (noselcollmdread) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with multi chunk I/O (H5D__chunk_addrmap) (MC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) Testing -- Collective MD read with link chunk I/O (H5D__sort_chunk) (LC_coll_MD_read) All tests were successful. All tests were successful. All tests were successful. All tests were successful. All tests were successful. All tests were successful. =================================== ***PHDF5 tests detected 1040 errors*** =================================== --8<---------------cut here---------------end--------------->8--- -- Thanks, Maxim ------------=_1724063942-30538-1--