From debbugs-submit-bounces@debbugs.gnu.org Sat Dec 30 14:45:14 2023 Received: (at submit) by debbugs.gnu.org; 30 Dec 2023 19:45:14 +0000 Received: from localhost ([127.0.0.1]:45106 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJfGj-0005T6-NV for submit@debbugs.gnu.org; Sat, 30 Dec 2023 14:45:14 -0500 Received: from lists.gnu.org ([2001:470:142::17]:45956) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rJfGg-00050x-3i for submit@debbugs.gnu.org; Sat, 30 Dec 2023 14:45:12 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rJfGW-0007c6-Hk for guix-patches@gnu.org; Sat, 30 Dec 2023 14:45:01 -0500 Received: from mout-p-201.mailbox.org ([80.241.56.171]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_CHACHA20_POLY1305:256) (Exim 4.90_1) (envelope-from ) id 1rJfGU-0007x1-Od for guix-patches@gnu.org; Sat, 30 Dec 2023 14:45:00 -0500 Received: from smtp2.mailbox.org (smtp2.mailbox.org [10.196.197.2]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (No client certificate requested) by mout-p-201.mailbox.org (Postfix) with ESMTPS id 4T2XlB0kqTz9tCl for ; Sat, 30 Dec 2023 20:44:54 +0100 (CET) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=troyfigiel.com; s=MBO0001; t=1703965494; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type; bh=abkA1X0U9OmhZoFjEPTUilo/c9rjUCX234UA27nIEvo=; b=YII25ux6yjkhiXb77xFiFkjVeDUw9kaGKH0p8PCVS1kbyMqg7fjprEc89zVRxylGqrVTVf 1hp4u66Qe+tpXGS4M64VXsv6S5hP83jX1nkUttXbuuU6TA+gBw1YwRvEjxn0ksiiFFDRvj IbqtT23dBQlLTBzkSniBMIIYyTgC7+G/suZDB/rp75JmDWa1ruM9Si4kcwwdpWW0zm2Enq 5uqhU5U29GTHjF+ST+jqhh6Gi8WfECdkXNOTvqLuVhxyHa4QGQAj/SH+oQPH1J2OJFwRay JjPgTmhM7SgUM3KtvH99cN8T27pYuiASpNMusoPA9qy1/XaQW7R1IVW38H2oDg== From: Troy Figiel To: guix-patches@gnu.org Subject: [PATCH] gnu: python-hicexplorer: Fix build. Date: Sat, 30 Dec 2023 20:36:17 +0100 Message-ID: <87sf3jtqz2.fsf@troyfigiel.com> MIME-Version: 1.0 Content-Type: text/plain Received-SPF: pass client-ip=80.241.56.171; envelope-from=troy@troyfigiel.com; helo=mout-p-201.mailbox.org X-Spam_score_int: -27 X-Spam_score: -2.8 X-Spam_bar: -- X-Spam_report: (-2.8 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_LOW=-0.7, SPF_HELO_NONE=0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) * gnu/packages/bioinformatics.scm (python-hicexplorer)[snippet]: Remove catchall pattern of patch version numbers in setup.py. --- gnu/packages/bioinformatics.scm | 11 ++++++++++- 1 file changed, 10 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index de37d19264..0fa0961735 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16602,7 +16602,16 @@ (define-public python-hicexplorer (file-name (git-file-name name version)) (sha256 (base32 - "1yavgxry38g326z10bclvdf8glmma05fxj5m73h15m1r2l9xmw3v")))) + "1yavgxry38g326z10bclvdf8glmma05fxj5m73h15m1r2l9xmw3v")) + (modules '((guix build utils))) + ;; setup.py is malformed. The requirements are defined using a catchall + ;; pattern for the patch version number. This has been fixed in version + ;; 3.7.3, but we cannot upgrade to this version yet, since some Guix + ;; packages are not new enough. (See upstream commit + ;; 4845c715ec7b105e938d0c2426e27d0181690bfe for the fix). + (snippet '(substitute* "setup.py" + (("\\.\\*") + ""))))) (build-system pyproject-build-system) (arguments (list base-commit: f24b14767d362a84e6469682b4fe303b50f4b589 -- 2.40.1 From debbugs-submit-bounces@debbugs.gnu.org Thu Jan 04 07:39:46 2024 Received: (at 68156-done) by debbugs.gnu.org; 4 Jan 2024 12:39:46 +0000 Received: from localhost ([127.0.0.1]:53838 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rLN0j-0004p9-OQ for submit@debbugs.gnu.org; Thu, 04 Jan 2024 07:39:45 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]:56094) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rLN0i-0004ov-5P for 68156-done@debbugs.gnu.org; Thu, 04 Jan 2024 07:39:44 -0500 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rLN0X-0007jI-VY; Thu, 04 Jan 2024 07:39:34 -0500 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=h5hoKnNNrvX590Tnd2Dj2S6MSiFVN4NaX3CT4g5o/vs=; b=XmQa12A5ibh/scQhNLJa 6HtxmL0L45Qdb1gR1kPfoZ1nl5M9OuDUqfHWHr9t1TbXWttCI0FMSfkBbo0oSOjd51ZTYo3kutJtP C7aFyrDb7DLcsu0Rda+UjIqLTcssFkgmxlsddk66B3htKMbc+4kn81/GuRGxV6QDtrYwx1oLu0YTZ gQJyXjgj8bjEdrsZJlP52AVYFSwDsM2omGDD8oQ0XSZ6VzgRkpVxKxsLpn99CJ03+j+XnoNOGIXZ7 iRU66SgCnaiWfeCY5tk3xE5TtgjCrw9s+9w/4PVrOslcWXyQjC7ACDJqPmq0hVSO34xbpmfcZSbf/ IY9SQkBM9MCPyw==; From: Mathieu Othacehe To: Troy Figiel Subject: Re: [bug#68156] [PATCH] gnu: python-hicexplorer: Fix build. In-Reply-To: <87sf3jtqz2.fsf@troyfigiel.com> (Troy Figiel's message of "Sat, 30 Dec 2023 20:36:17 +0100") References: <87sf3jtqz2.fsf@troyfigiel.com> Date: Thu, 04 Jan 2024 13:39:30 +0100 Message-ID: <871qax2ry5.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 68156-done Cc: 68156-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) > * gnu/packages/bioinformatics.scm (python-hicexplorer)[snippet]: Remove > catchall pattern of patch version numbers in setup.py. Applied, thanks, Mathieu From unknown Tue Aug 19 14:22:27 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Fri, 02 Feb 2024 12:24:15 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator