GNU bug report logs - #68156
[PATCH] gnu: python-hicexplorer: Fix build.

Previous Next

To add a comment to this bug, you must first unarchive it, by sending
a message to control AT debbugs.gnu.org, with unarchive 68156 in the body.
You can then email your comments to 68156 AT debbugs.gnu.org in the normal way.

Toggle the display of automated, internal messages from the tracker.

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Troy Figiel <troy <at> troyfigiel.com>
To: guix-patches <at> gnu.org
Subject: [PATCH] gnu: python-hicexplorer: Fix build.
Date: Sat, 30 Dec 2023 20:36:17 +0100

* gnu/packages/bioinformatics.scm (python-hicexplorer)[snippet]: Remove
catchall pattern of patch version numbers in setup.py.
---
 gnu/packages/bioinformatics.scm | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index de37d19264..0fa0961735 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -16602,7 +16602,16 @@ (define-public python-hicexplorer
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1yavgxry38g326z10bclvdf8glmma05fxj5m73h15m1r2l9xmw3v"))))
+         "1yavgxry38g326z10bclvdf8glmma05fxj5m73h15m1r2l9xmw3v"))
+       (modules '((guix build utils)))
+       ;; setup.py is malformed. The requirements are defined using a catchall
+       ;; pattern for the patch version number. This has been fixed in version
+       ;; 3.7.3, but we cannot upgrade to this version yet, since some Guix
+       ;; packages are not new enough. (See upstream commit
+       ;; 4845c715ec7b105e938d0c2426e27d0181690bfe for the fix).
+       (snippet '(substitute* "setup.py"
+                   (("\\.\\*")
+                    "")))))
     (build-system pyproject-build-system)
     (arguments
      (list

base-commit: f24b14767d362a84e6469682b4fe303b50f4b589
-- 
2.40.1

Message #10 received at 68156-done <at> debbugs.gnu.org (full text, mbox):

From: Mathieu Othacehe <othacehe <at> gnu.org>
To: Troy Figiel <troy <at> troyfigiel.com>
Cc: 68156-done <at> debbugs.gnu.org
Subject: Re: [bug#68156] [PATCH] gnu: python-hicexplorer: Fix build.
Date: Thu, 04 Jan 2024 13:39:30 +0100

> * gnu/packages/bioinformatics.scm (python-hicexplorer)[snippet]: Remove
> catchall pattern of patch version numbers in setup.py.

Applied, thanks,

Mathieu

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.