From unknown Fri Jun 20 07:10:19 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#67899 <67899@debbugs.gnu.org> To: bug#67899 <67899@debbugs.gnu.org> Subject: Status: [PATCH] gnu: r-sccustomize: Update to (git-version 2.0.1 revision commit). Reply-To: bug#67899 <67899@debbugs.gnu.org> Date: Fri, 20 Jun 2025 14:10:19 +0000 retitle 67899 [PATCH] gnu: r-sccustomize: Update to (git-version 2.0.1 revi= sion commit). reassign 67899 guix-patches submitter 67899 nafkhamdc severity 67899 normal tag 67899 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Tue Dec 19 07:16:41 2023 Received: (at submit) by debbugs.gnu.org; 19 Dec 2023 12:16:42 +0000 Received: from localhost ([127.0.0.1]:34537 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rFZ1c-0007TS-V9 for submit@debbugs.gnu.org; Tue, 19 Dec 2023 07:16:41 -0500 Received: from lists.gnu.org ([2001:470:142::17]:39224) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rFZ1P-0007SE-W5 for submit@debbugs.gnu.org; Tue, 19 Dec 2023 07:16:39 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rFZ1G-0007NJ-Sb for guix-patches@gnu.org; Tue, 19 Dec 2023 07:16:19 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1rFZ1A-0008V4-SV for guix-patches@gnu.org; Tue, 19 Dec 2023 07:16:15 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1702988150; x=1704802551; bh=ZLQoP/ckvtflx3D LCVnmsj491WFaK7mr6w6M1jovWRg=; b=pnynwtpZ8Bse7+Ik3XXKrXiLt/8XC31 bPyySuF3CtVUc31/VJFpzihFSwz7oU62BrksXWG/lxk6LWy5my88J/wTaq8a0zvn LPnVJY0B8WdLo7FwPebI67+Eb4MvFNSmDSdG5P45WaQiV9rk0WXOrL2/DromNRxc LGUvWsfl7Npc= Received: from SW-IT-P-EX3.mdc-berlin.net (mgw3.mdc-berlin.de [141.80.113.61]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 2093B160139 for ; Tue, 19 Dec 2023 13:15:49 +0100 (CET) Received: from localhost (141.80.218.27) by SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.2.1258.28; Tue, 19 Dec 2023 13:15:49 +0100 From: nafkhamdc To: Subject: [PATCH] gnu: r-sccustomize: Update to (git-version 2.0.1 revision commit). Date: Tue, 19 Dec 2023 12:15:33 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) To SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) X-TM-AS-Product-Ver: SMEX-14.0.0.3152-9.1.1006-28066.007 X-TM-AS-Result: No-10--5.646400-5.000000 X-TMASE-MatchedRID: yrq55aJB8w0exiL4/gRNNVCxqE4whnXlyiKgKtIyB4rVjNsehGf0vb8F Hrw7frluf146W0iUu2tvedD3CYSjHQE+dA3RWUSvnVTWWiNp+v+d3jHHfmu5DAT5mcwTNCG1/8Y y07M6kQukzI6oZxYpxgGN2ThlUwL/0N7DjAdxZNTi8zVgXoAlttjaFzMlswRCC24oEZ6SpSk6XE E7Yhw4FkEcpXOwSVejb7Et/R1a+7lAZ8kFXdh+S2y46xZh4XCO6kSL1BJRw5q6NcNhRmEDjMWFm oKsUesL1QcjtcUVInLOOHYi5aZ5f7dKECLo/klXhRFX0MbNzemQ4JrfEHpLweZmgnjb/yyM1RkH asLA4hI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.646400-5.000000 X-TMASE-Version: SMEX-14.0.0.3152-9.1.1006-28066.007 X-TM-SNTS-SMTP: DD6FD4AB26EB164984CBC91DC81E80887E8A715423681E38D98BED197AA68DCC2000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: nafkhamdc X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (r-sccustomize): Update to (git-version 2.0.1 revision commit). Change-Id: I4e4b499a658eaed0396263d1d9fd277a541a13d9 --- gnu/packages/bioinformatics.scm | 87 ++++++++++++++++----------------- 1 file changed, 43 insertions(+), 44 deletions(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2546454acd..3e7b99ee61 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10245,55 +10245,54 @@ (define-public r-presto (license license:gpl3)))) (define-public r-sccustomize - (let ((commit "8414d1f5fb32277855b0619191a568932b7baeb0") + (let ((commit "397374590dae2ccc0c560897dcd1ce4382c18798") (revision "1")) (package (name "r-sccustomize") - (version (git-version "0.7.0" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/samuel-marsh/scCustomize") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1wcgfq7lx83a2kf8pjbw524gdvxf351n08cwd5wzmmy57kf4knbj")))) + (version (git-version "2.0.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/samuel-marsh/scCustomize") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "11bafm0mlck27fqd8brz80pxb8dc5q0aqbp8zv0s9sx97njp7wsl")))) (properties `((upstream-name . "scCustomize"))) (build-system r-build-system) - (propagated-inputs - (list r-circlize - r-colorway - r-cowplot - r-data-table - r-dittoseq - r-dplyr - r-forcats - r-ggbeeswarm - r-ggplot2 - r-ggprism - r-ggpubr - r-ggrastr - r-ggrepel - r-glue - r-janitor - r-magrittr - r-matrix - r-paletteer - r-patchwork - r-pbapply - r-purrr - r-remotes - r-scales - r-scattermore - r-seurat - r-seuratobject - r-stringi - r-stringr - r-tibble - r-tidyr - r-tidyselect - r-viridis)) + (propagated-inputs (list r-circlize + r-colorway + r-cowplot + r-data-table + r-dittoseq + r-dplyr + r-forcats + r-ggbeeswarm + r-ggplot2 + r-ggprism + r-ggpubr + r-ggrastr + r-ggrepel + r-glue + r-janitor + r-magrittr + r-matrix + r-paletteer + r-patchwork + r-pbapply + r-purrr + r-remotes + r-scales + r-scattermore + r-seurat + r-seuratobject + r-stringi + r-stringr + r-tibble + r-tidyr + r-tidyselect + r-viridis)) (native-inputs (list r-knitr)) (home-page "https://github.com/samuel-marsh/scCustomize") (synopsis "Custom visualization and analyses of single-cell sequencing") base-commit: bed9103579686b1cc991ee4f955c2bc5067299d0 prerequisite-patch-id: 7bd32dc55b3407be04ec136d6abc1e55970c0bcc -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Dec 19 08:45:46 2023 Received: (at 67899-done) by debbugs.gnu.org; 19 Dec 2023 13:45:46 +0000 Received: from localhost ([127.0.0.1]:34651 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rFaPp-0008OB-NH for submit@debbugs.gnu.org; Tue, 19 Dec 2023 08:45:45 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21072) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rFaPn-0008Hk-KR for 67899-done@debbugs.gnu.org; Tue, 19 Dec 2023 08:45:44 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1702993537; cv=none; d=zohomail.com; s=zohoarc; b=k1pwXiqU5Y7pYpT/RhbGYTuf+eZcJBid/cAPnMd5qhgl/muob2wVPr+JY70ROM0N64eoNeCnlsry/QlQ1k31HKxi5ryBUyes5hkqaQ2Go3QBGiVRGEuxB1LAip7XCMwwG7cBlw6cCTxbZKaLdFaNtuf8j4YAPcSx/zFcLMUyBas= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1702993537; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=/q9VrZKp3M7LR1QRlCpyOnCEBV3Lp/jpeQi9XVjCjWo=; b=FPQq9s/HhkBaYLDtXj5Ln2TEGgSCUxi3Gza6jpx235hoZ4rnF7HE3u/QawHb1Kp4JHFroDeKMT3WlnOqcbInod6LsJPDpieaiNLcb2AXlGrz1VDVEc175Uj1ZSdbMreH2tH0/N8pVS4erdX3X80W+RUo4M55wqtespv4//CBiwk= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1702993537; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=/q9VrZKp3M7LR1QRlCpyOnCEBV3Lp/jpeQi9XVjCjWo=; b=DfiliBqoOyQgNYqE989WIMJ+M4dJEiECfTaGFktm0P5wmT/3cJ81UhrUbEAlnACX iK4ytGeg6OU1o6kYAu625XwEaNCjWcFha9J6rgFSuyAwIcO8d/0gJFr4/KuTemUveK8 4TFYSQkq++otz33WFuKiU1dQt1ejlIyPhmGoDFNY= Received: from localhost (141.80.245.105 [141.80.245.105]) by mx.zohomail.com with SMTPS id 1702993536110694.9369271327022; Tue, 19 Dec 2023 05:45:36 -0800 (PST) User-agent: mu4e 1.10.8; emacs 29.1 From: Ricardo Wurmus To: 67899-done@debbugs.gnu.org Subject: [PATCH] gnu: r-sccustomize: Update to (git-version 2.0.1 revision commit). Date: Tue, 19 Dec 2023 14:44:56 +0100 Message-ID: <87sf3y71c3.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 67899-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patch. I changed the commit summary to use the actual version string and pushed it. -- Ricardo From unknown Fri Jun 20 07:10:19 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Wed, 17 Jan 2024 12:24:17 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator