Package: guix-patches;
Reported by: Vinicius Monego <monego <at> posteo.net>
Date: Tue, 5 Dec 2023 15:29:01 UTC
Severity: normal
Tags: patch
View this message in rfc822 format
From: Vinicius Monego <monego <at> posteo.net> To: 67643 <at> debbugs.gnu.org Cc: Vinicius Monego <monego <at> posteo.net> Subject: [bug#67643] [PATCH 2/2] gnu: Add python-bambi. Date: Tue, 5 Dec 2023 15:30:19 +0000
* gnu/packages/statistics.scm: Sort modules alphabetically.
(python-bambi): New variable.
Change-Id: I54931227310e3ad3b8d5c9272dcc641877b78bfb
---
gnu/packages/statistics.scm | 77 +++++++++++++++++++++++++++++++++----
1 file changed, 70 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 30c6a9483e..c9a9672a35 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -35,25 +35,26 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages statistics)
- #:use-module (guix gexp)
#:use-module ((guix licenses) #:prefix license:)
- #:use-module (guix packages)
#:use-module (guix download)
- #:use-module (guix hg-download)
+ #:use-module (guix gexp)
#:use-module (guix git-download)
+ #:use-module (guix hg-download)
+ #:use-module (guix packages)
#:use-module (guix utils)
#:use-module (guix build-system ant)
#:use-module (guix build-system cmake)
#:use-module (guix build-system emacs)
#:use-module (guix build-system gnu)
- #:use-module (guix build-system r)
#:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
- #:use-module (guix build-system trivial)
+ #:use-module (guix build-system r)
#:use-module (guix build-system ruby)
+ #:use-module (guix build-system trivial)
#:use-module (gnu packages)
#:use-module (gnu packages algebra)
#:use-module (gnu packages autotools)
+ #:use-module (gnu packages base)
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
@@ -66,9 +67,10 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages flex)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
- #:use-module (gnu packages gtk)
#:use-module (gnu packages gettext)
#:use-module (gnu packages glib)
+ #:use-module (gnu packages graphviz)
+ #:use-module (gnu packages gtk)
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
@@ -100,7 +102,6 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages time)
#:use-module (gnu packages tls)
- #:use-module (gnu packages base)
#:use-module (gnu packages uglifyjs)
#:use-module (gnu packages version-control)
#:use-module (gnu packages web)
@@ -2266,6 +2267,68 @@ (define-public python-formulae
for mixed-effects models.")
(license license:expat)))
+(define-public python-bambi
+ (package
+ (name "python-bambi")
+ (version "0.13.0")
+ (source
+ (origin
+ (method git-fetch) ;PyPI is missing files required by tests
+ (uri (git-reference
+ (url "https://github.com/bambinos/bambi")
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1hkkw65nbxg15rzp9rc8zxxwsg454hfa5mq853752hp6bp4r7szp"))))
+ (build-system pyproject-build-system)
+ (arguments
+ ;; The tests below use the network, and there's no configuration to
+ ;; skip the network tests.
+ (list
+ #:test-flags
+ #~(list "--ignore"
+ "tests/test_aliases.py"
+ "--ignore"
+ "tests/test_plots.py"
+ "-k"
+ (string-append
+ "not "
+ (string-join
+ (list
+ "test_logistic_regression_categoric_alternative_samplers"
+ "test_regression_alternative_samplers"
+ "test_predict_new_groups"
+ "test_predict_new_groups_fail"
+ "test_censored_response"
+ "test_data_is_copied"
+ "test_extra_namespace"
+ "test_predict_offset"
+ "test_custom_prior"
+ "test_normal_with_splines"
+ "test_gamma_with_splines")
+ " and not ")))
+ #:phases #~(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda _
+ ;; Some tests require write permission.
+ (setenv "HOME" "/tmp"))))))
+ (propagated-inputs (list python-arviz python-formulae python-graphviz
+ python-pandas python-pymc))
+ (native-inputs (list python-black
+ python-ipython
+ python-pylint
+ python-pytest
+ python-pytest-cov
+ python-seaborn))
+ (home-page "https://bambinos.github.io/bambi/")
+ (synopsis "Bayesian Model Building Interface in Python")
+ (description
+ "Bambi is a high-level Bayesian model-building interface written in Python.
+It's built on top of the PyMC probabilistic programming framework, and is
+designed to make it extremely easy to fit mixed-effects models common in
+social sciences settings using a Bayesian approach.")
+ (license license:expat)))
+
(define-public python-chaospy
(package
(name "python-chaospy")
--
2.39.2
GNU bug tracking system
Copyright (C) 1999 Darren O. Benham,
1997,2003 nCipher Corporation Ltd,
1994-97 Ian Jackson.