GNU bug report logs - #67544
[PATCH] gnu: Add r-polyester.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Ricardo Wurmus <rekado <at> elephly.net>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#67544: closed ([PATCH] gnu: Add r-polyester.)
Date: Mon, 11 Dec 2023 05:31:01 +0000

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Your message dated Mon, 11 Dec 2023 06:29:19 +0100
with message-id <87wmtlb933.fsf <at> elephly.net>
and subject line Re: [bug#67544] [PATCH] gnu: Add r-polyester.
has caused the debbugs.gnu.org bug report #67544,
regarding [PATCH] gnu: Add r-polyester.
to be marked as done.

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help-debbugs <at> gnu.org.)


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From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Subject: [PATCH] gnu: Add r-polyester.
Date: Thu, 30 Nov 2023 13:20:05 +0100

* gnu/packages/bioconductor.scm (r-polyester): New variable.

Change-Id: I415089cda3214ec04402fc6f4505fa868414d0e2
---
 gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
 1 file changed, 28 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 7ff364ee55..4f15213481 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9592,6 +9592,34 @@ (define-public r-piano
 set analyses.")
     (license license:gpl2+)))
 
+(define-public r-polyester
+  (package
+    (name "r-polyester")
+    (version "1.38.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "polyester" version))
+       (sha256
+        (base32 "1iycdxj0jhh2faclfzflp2cjc2zmxmhy03avv75h0qg3j5kf35l4"))))
+    (properties `((upstream-name . "polyester")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-iranges
+           r-limma
+           r-logspline
+           r-s4vectors
+           r-zlibbioc))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/polyester")
+    (synopsis "Simulate RNA-seq reads")
+    (description
+     "The polyester package simulates RNA-seq reads from differential expression
+experiments with replicates.  The reads can then be aligned and used to perform
+comparisons of methods for differential expression.")
+    (license license:artistic2.0)))
+
 (define-public r-powertcr
   (package
     (name "r-powertcr")

base-commit: c34c3b1c2b1006ebeede016cca578d5f571fc7a8
-- 
2.41.0

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From: Ricardo Wurmus <rekado <at> elephly.net>
To: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
Cc: 67544-done <at> debbugs.gnu.org
Subject: Re: [bug#67544] [PATCH] gnu: Add r-polyester.
Date: Mon, 11 Dec 2023 06:29:19 +0100

Mădălin Ionel Patrașcu <madalinionel.patrascu <at> mdc-berlin.de> writes:

> * gnu/packages/bioconductor.scm (r-polyester): New variable.

Applied, thanks.  Pushed with commit
9535cee6cdf259f898fae043564038f53a809a9e.

-- 
Ricardo

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