From unknown Sat Sep 13 08:55:32 2025 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 X-Mailer: MIME-tools 5.509 (Entity 5.509) Content-Type: text/plain; charset=utf-8 From: bug#67544 <67544@debbugs.gnu.org> To: bug#67544 <67544@debbugs.gnu.org> Subject: Status: [PATCH] gnu: Add r-polyester. Reply-To: bug#67544 <67544@debbugs.gnu.org> Date: Sat, 13 Sep 2025 15:55:32 +0000 retitle 67544 [PATCH] gnu: Add r-polyester. reassign 67544 guix-patches submitter 67544 M=C4=83d=C4=83lin Ionel Patra=C8=99cu severity 67544 normal tag 67544 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Thu Nov 30 07:25:14 2023 Received: (at submit) by debbugs.gnu.org; 30 Nov 2023 12:25:14 +0000 Received: from localhost ([127.0.0.1]:52592 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1r8g6U-0001VQ-B9 for submit@debbugs.gnu.org; Thu, 30 Nov 2023 07:25:14 -0500 Received: from lists.gnu.org ([2001:470:142::17]:46372) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1r8g6Q-0001V5-I8 for submit@debbugs.gnu.org; Thu, 30 Nov 2023 07:25:12 -0500 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1r8g6B-00069h-W9 for guix-patches@gnu.org; Thu, 30 Nov 2023 07:24:56 -0500 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1r8g69-0000fy-Hm for guix-patches@gnu.org; Thu, 30 Nov 2023 07:24:55 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1701347074; x=1703161475; bh=5dTrGeMkseRhrZr Sef4eIUzVCDMJyl3Q7o6CreAB3UE=; b=SJTzCm4tDLxhQ7Qp7ViKCMg/gTLLjQo MElkeUpdIobRRFw9XqZ8nAlzjsPXaNc/ATUp7blpbq1+ExI2VToMr/kgJE/zJ8RT JtQzHFbNJbuKridY4L+dCW3P/q3UEPs3oL8WXCEdL7sgZWPHKuJ1cMx9ALTOIGi3 XL12sSoGEBvs= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 07A16160139 for ; Thu, 30 Nov 2023 13:24:33 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.35; Thu, 30 Nov 2023 13:24:33 +0100 From: =?UTF-8?q?M=C4=83d=C4=83lin=20Ionel=20Patra=C8=99cu?= To: Subject: [PATCH] gnu: Add r-polyester. Date: Thu, 30 Nov 2023 13:20:05 +0100 Message-ID: <5f8396258ecfaa27e88decd1a899b1afb0fa46d2.1701346805.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 X-Debbugs-Cc: Ricardo Wurmus Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX6.mdc-berlin.net (141.80.113.56) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-28028.006 X-TM-AS-Result: No-10--5.439400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCTiEPRj9j9rvwTlc9CcHMZerwqxtE531VKcl vg4wawq3/YUtGtrcVxDuNT8xdcEnQwE+dA3RWUSvwLYk+NSxc5r4qCLIu0mtIOznxfqv/qRmW8R Edt1lp4/1tGpodXl0v38ila05mrNB3SWdjqTh/wrGL//8mlodAxDkv2q7d+VDlwV2iaAfSWcURS Scn+QSXt0H8LFZNFG73Yq8RVaZivX9kZacZtM8g8j9Aac8EY/0Enwj1cJoRlgc/vuwhw3XVpT4h P9br0gE X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.439400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-28028.006 X-TM-SNTS-SMTP: 51F7E480A22F5B093AF3423D0C591CF61D7036443EADD1261FD500DC203117EE2000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioconductor.scm (r-polyester): New variable. Change-Id: I415089cda3214ec04402fc6f4505fa868414d0e2 --- gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++ 1 file changed, 28 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 7ff364ee55..4f15213481 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9592,6 +9592,34 @@ (define-public r-piano set analyses.") (license license:gpl2+))) +(define-public r-polyester + (package + (name "r-polyester") + (version "1.38.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "polyester" version)) + (sha256 + (base32 "1iycdxj0jhh2faclfzflp2cjc2zmxmhy03avv75h0qg3j5kf35l4")))) + (properties `((upstream-name . "polyester"))) + (build-system r-build-system) + (propagated-inputs + (list r-biostrings + r-iranges + r-limma + r-logspline + r-s4vectors + r-zlibbioc)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/polyester") + (synopsis "Simulate RNA-seq reads") + (description + "The polyester package simulates RNA-seq reads from differential expression +experiments with replicates. The reads can then be aligned and used to perform +comparisons of methods for differential expression.") + (license license:artistic2.0))) + (define-public r-powertcr (package (name "r-powertcr") base-commit: c34c3b1c2b1006ebeede016cca578d5f571fc7a8 -- 2.41.0 From debbugs-submit-bounces@debbugs.gnu.org Mon Dec 11 00:30:05 2023 Received: (at 67544-done) by debbugs.gnu.org; 11 Dec 2023 05:30:05 +0000 Received: from localhost ([127.0.0.1]:52249 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rCYrk-0002pA-PG for submit@debbugs.gnu.org; Mon, 11 Dec 2023 00:30:05 -0500 Received: from sender4-of-o50.zoho.com ([136.143.188.50]:21029) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1rCYrg-0002oD-0N for 67544-done@debbugs.gnu.org; Mon, 11 Dec 2023 00:30:03 -0500 ARC-Seal: i=1; a=rsa-sha256; t=1702272582; cv=none; d=zohomail.com; s=zohoarc; b=PEIr52b16gG4YG5OVsvlCtwTEgevwChMsl5gf+5IzeJrlq5GC10ab1DS9TRBOTEmLqG7kVaNLrdWGFAZNu++W9yqYTQNoOigIJP/X67XGCDkOCY6I2O3DJ6jzaA6CnF6BDzxyxVB0A+j/9QvFAYtt1pD0by0B3QslVZqXYwSxjw= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1702272582; h=Content-Type:Content-Transfer-Encoding:Cc:Cc:Date:Date:From:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:Subject:To:To:Message-Id:Reply-To; bh=Gk2mUDJwp8cd7d6IsIgDAv15aUGSjPgQlgdzMVinYl8=; b=a+IP+R0l6fuuAlK6QrJxBpuF8zgBREzIPO4xwAbcR+3sHH/XQVmzCjzGeYanXx/KFt9DdsbI2XusE4LcLvdWXgCRmCESw+7YURcXAcfe0RCMrX8hihjsuY6oeera8o7TI2uPOBesplmtA83hQftm4N9151BIN7HrYHXu/8nv7PY= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1702272582; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=Gk2mUDJwp8cd7d6IsIgDAv15aUGSjPgQlgdzMVinYl8=; b=HXm56Ay1fSQ+s6LUbanvbRD1KznM3LCV6s7gFO9EpEBdYwKumb1zZ7dlsYKppIHW Dw5qqAGlnAsB1rkDt3wcEk6f5EzmxuhlF3GQg6Q4wOm4kq8cPv1drfYLPtCw7ycrIwd Xq4gLpx95KqeP455j9rSsIlgAmsNvrkXSbwvwbpk= Received: from localhost (153-108-142-46.pool.kielnet.net [46.142.108.153]) by mx.zohomail.com with SMTPS id 1702272579940850.9340914518409; Sun, 10 Dec 2023 21:29:39 -0800 (PST) References: <5f8396258ecfaa27e88decd1a899b1afb0fa46d2.1701346805.git.madalinionel.patrascu@mdc-berlin.de> User-agent: mu4e 1.10.8; emacs 29.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#67544] [PATCH] gnu: Add r-polyester. Date: Mon, 11 Dec 2023 06:29:19 +0100 In-reply-to: <5f8396258ecfaa27e88decd1a899b1afb0fa46d2.1701346805.git.madalinionel.patrascu@mdc-berlin.de> Message-ID: <87wmtlb933.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: -0.0 (/) X-Debbugs-Envelope-To: 67544-done Cc: 67544-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm (r-polyester): New variable. Applied, thanks. Pushed with commit 9535cee6cdf259f898fae043564038f53a809a9e. --=20 Ricardo From unknown Sat Sep 13 08:55:32 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Mon, 08 Jan 2024 12:24:07 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator