GNU bug report logs - #66966
[Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx

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Message #44 received at 66966 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <66966 <at> debbugs.gnu.org>
Subject: [PATCH 12/13] gnu: Add r-bbcanalyzer.
Date: Mon, 6 Nov 2023 12:06:48 +0100

* gnu/packages/bioconductor.scm (r-bbcanalyzer): New variable.

Change-Id: Icd3c77c9522d73638ddb0934ad332ddb7b947a8e
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a8fa9d7af4..384bb7cbdf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22550,6 +22550,36 @@ (define-public r-baynorm
 point estimates from posterior (2D array) or samples from posterior (3D array).")
     (license license:gpl2+)))
 
+(define-public r-bbcanalyzer
+  (package
+    (name "r-bbcanalyzer")
+    (version "1.32.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "BBCAnalyzer" version))
+       (sha256
+        (base32 "108jcgsf5hyj348y17hcw8m3zcfjgzpx8nz4n5jgxp2lgxjyizy1"))))
+    (properties `((upstream-name . "BBCAnalyzer")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-genomicranges
+           r-iranges
+           r-rsamtools
+           r-summarizedexperiment
+           r-variantannotation))
+    (home-page "https://bioconductor.org/packages/BBCAnalyzer")
+    (synopsis "Visualizing base counts")
+    (description
+     "BBCAnalyzer is a package for visualizing the relative or absolute number
+of bases, deletions and insertions at defined positions in sequence alignment
+data available as bam files in comparison to the reference bases.  Markers for
+the relative base frequencies, the mean quality of the detected bases, known
+mutations or polymorphisms and variants called in the data may additionally be
+included in the plots.")
+    (license license:lgpl3)))
+
 (define-public r-biocthis
   (package
     (name "r-biocthis")
-- 
2.41.0

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