GNU bug report logs - #66966
[Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx

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Message #35 received at 66966 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <66966 <at> debbugs.gnu.org>
Subject: [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805.
Date: Mon, 6 Nov 2023 12:06:39 +0100

* gnu/packages/bioconductor.scm (r-bsgenome-ecoli-ncbi-20080805):
    New variable.

Change-Id: Ic42527fa334be4c23ebe2e19461571d899db77ca
---
 gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 47931061af..40402f798f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -395,6 +395,28 @@ (define-public r-bsgenome-drerio-ucsc-danrer11
 as provided by UCSC (danRer11, May 2017) and stored in Biostrings objects.")
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-ecoli-ncbi-20080805
+  (package
+    (name "r-bsgenome-ecoli-ncbi-20080805")
+    (version "1.3.1000")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "BSgenome.Ecoli.NCBI.20080805" version
+                              'annotation))
+       (sha256
+        (base32 "1l7mjyys1kaq4mbia9jamyw6sd0ij1wypwxvwy8aksan3gcfnh27"))))
+    (properties `((upstream-name . "BSgenome.Ecoli.NCBI.20080805")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-bsgenome))
+    (home-page
+     "https://bioconductor.org/packages/BSgenome.Ecoli.NCBI.20080805")
+    (synopsis "Escherichia coli full genomes")
+    (description
+     "Escherichia coli full genomes for several strains as provided by NCBI on
+2008/08/05 and stored in Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-bsgenome-hsapiens-1000genomes-hs37d5
   (package
     (name "r-bsgenome-hsapiens-1000genomes-hs37d5")
-- 
2.41.0

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