GNU bug report logs - #66966
[Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx

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Message #14 received at 66966 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <66966 <at> debbugs.gnu.org>
Subject: [PATCH 07/13] gnu: Add r-bayesknockdown.
Date: Mon, 6 Nov 2023 12:06:43 +0100

* gnu/packages/bioconductor.scm (r-bayesknockdown): New variable.

Change-Id: Icceffc04071efaa8a8b79144005fa7745abc7e1a
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 986227ec38..12d9e1b077 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22441,6 +22441,30 @@ (define-public r-basilisk
 Python environments in a single R session.")
     (license license:gpl3)))
 
+(define-public r-bayesknockdown
+  (package
+    (name "r-bayesknockdown")
+    (version "1.28.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "BayesKnockdown" version))
+       (sha256
+        (base32 "1argd4gfld2yb0vvpgb5k7m6agmi58712f6g5dj4gnb7kg4rp1l8"))))
+    (properties `((upstream-name . "BayesKnockdown")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biobase))
+    (home-page "https://bioconductor.org/packages/BayesKnockdown")
+    (synopsis "Posterior probabilities for edges from knockdown data")
+    (description
+     "This package provides a simple, fast Bayesian method for computing posterior
+probabilities for relationships between a single predictor variable and multiple
+potential outcome variables, incorporating prior probabilities of relationships.
+In the context of knockdown experiments, the predictor variable is the
+knocked-down gene, while the other genes are potential targets.  Can also be
+used for differential expression/2-class data.")
+    (license license:gpl3)))
+
 (define-public r-biocthis
   (package
     (name "r-biocthis")
-- 
2.41.0

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