GNU bug report logs - #66930
[PATCH] gnu: Add python-pyamg.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: Sharlatan Hellseher <sharlatanus <at> gmail.com>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#66930: closed ([PATCH] gnu: Add python-pyamg.)
Date: Sun, 21 Jan 2024 17:45:02 +0000

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Your message dated Sun, 21 Jan 2024 17:44:19 +0000
with message-id <874jf6oa30.fsf <at> gmail.com>
and subject line [PATCH] gnu: Add python-pyamg.
has caused the debbugs.gnu.org bug report #66930,
regarding [PATCH] gnu: Add python-pyamg.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
66930: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66930
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Felix Gruber <felgru <at> posteo.net>
To: guix-patches <at> gnu.org
Cc: Felix Gruber <felgru <at> posteo.net>
Subject: [PATCH] gnu: Add python-pyamg.
Date: Sat,  4 Nov 2023 15:05:56 +0000

* gnu/packages/python-science.scm (python-pyamg): New variable.

Change-Id: Ibf39fecd14d4e6fd72078b217737e5e5cbbf2321
---
 gnu/packages/python-science.scm | 36 +++++++++++++++++++++++++++++++++
 1 file changed, 36 insertions(+)

diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 4063797a30..1c2edda118 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -387,6 +387,42 @@ (define-public python-trimesh
 library.")
     (license license:expat)))
 
+(define-public python-pyamg
+  (package
+    (name "python-pyamg")
+    (version "5.0.0")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "pyamg" version))
+              (sha256
+               (base32
+                "0bm0cbqcj5zgs4k7djs5ga98pb95raxxdd674g744hv1iwi6gfga"))))
+    (build-system pyproject-build-system)
+    (propagated-inputs (list pybind11 python-numpy python-scipy))
+    (native-inputs (list python-setuptools-scm python-pytest))
+    (arguments
+     (list
+      #:test-flags
+      ;; Test installed package in order to find C++ modules.
+      #~(list "--pyargs" "pyamg.tests")))
+    (home-page "https://github.com/pyamg/pyamg")
+    (synopsis "Algebraic Multigrid Solvers in Python")
+    (description "PyAMG is a Python library of Algebraic Multigrid
+(AMG) solvers.
+
+PyAMG features implementations of:
+@itemize
+@item Ruge-Stuben (RS) or Classical AMG
+@item AMG based on Smoothed Aggregation (SA)
+@item Adaptive Smoothed Aggregation (αSA)
+@item Compatible Relaxation (CR)
+@item Krylov methods such as CG, GMRES, FGMRES, BiCGStab, MINRES, etc.
+@end itemize
+PyAMG is primarily written in Python with supporting C++ code for
+performance critical operations.
+")
+    (license license:expat)))
+
 (define-public python-tspex
   (package
     (name "python-tspex")

base-commit: 9dcd8802f5bc472579f23a38dcf437f8a9ac976c
-- 
2.42.0

[Message part 3 (message/rfc822, inline)]

From: Sharlatan Hellseher <sharlatanus <at> gmail.com>
To: 66930-done <at> debbugs.gnu.org
Subject: [PATCH] gnu: Add python-pyamg.
Date: Sun, 21 Jan 2024 17:44:19 +0000

[Message part 4 (text/plain, inline)]

I've apply changes to the patch:
- updated to the latest upstream version 5.0.1
- move propagated and native inputs after arguments
- move pybind11 to native-inputs


--8<---------------cut here---------------start------------->8---
@@ -460,21 +460,21 @@ (define-public python-meshzoo
 (define-public python-pyamg
   (package
     (name "python-pyamg")
-    (version "5.0.0")
+    (version "5.0.1")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "pyamg" version))
               (sha256
                (base32
-                "0bm0cbqcj5zgs4k7djs5ga98pb95raxxdd674g744hv1iwi6gfga"))))
+                "0l3dliwynxyjvbgpmi2k8jqvkkw6fc00c8w69h6swhrkfh0ql12z"))))
     (build-system pyproject-build-system)
-    (propagated-inputs (list pybind11 python-numpy python-scipy))
-    (native-inputs (list python-setuptools-scm python-pytest))
     (arguments
      (list
       #:test-flags
       ;; Test installed package in order to find C++ modules.
       #~(list "--pyargs" "pyamg.tests")))
+    (native-inputs (list pybind11 python-pytest python-setuptools-scm))
+    (propagated-inputs (list python-numpy python-scipy))
     (home-page "https://github.com/pyamg/pyamg")
     (synopsis "Algebraic Multigrid Solvers in Python")
     (description "PyAMG is a Python library of Algebraic Multigrid
@@ -489,8 +489,7 @@ (define-public python-pyamg
 @item Krylov methods such as CG, GMRES, FGMRES, BiCGStab, MINRES, etc.
 @end itemize
 PyAMG is primarily written in Python with supporting C++ code for
-performance critical operations.
-")
+performance critical operations.")
     (license license:expat)))

 (define-public python-tspex
--8<---------------cut here---------------end--------------->8---

Pushe as 5f93aa182a32e4baecc6238c21d2538af0b18ad3

Thanks,
Oleg

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