GNU bug report logs - #66914
Add r-bsgenome-hsapiens-ucsc-hg38-masked and r-dnamcrosshyb.

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Message #8 received at 66914 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <66914 <at> debbugs.gnu.org>
Subject: [PATCH 2/2] gnu: Add r-dnamcrosshyb.
Date: Fri, 3 Nov 2023 14:41:00 +0100

* gnu/packages/bioconductor.scm (r-dnamcrosshyb): New variable.

Change-Id: I19e332e6adf0ce9cc721d89bb74a1aa709778873
---
 gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++++
 1 file changed, 45 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ac09a079b4..d5d5e9d25d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12636,6 +12636,51 @@ (define-public r-dnabarcodes
 demultiplexed, i.e. assigned to their original reference barcode.")
     (license license:gpl2)))
 
+;; It depends on Bioconductor packages
+(define-public r-dnamcrosshyb
+  ;; There aren't any releases.
+  (let ((commit "fe8acb33667e81f00dcb84e0fa75c87ab2db5d8f")
+        (revision "1"))
+    (package
+      (name "r-dnamcrosshyb")
+      (version (git-version "0.0.0.9000" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/pjhop/DNAmCrosshyb")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "12j1xsiqpvny5rp23z1az0k4cj5ajbcwkg65z00s16vywi2rx6nb"))))
+      (properties `((upstream-name . "DNAmCrosshyb")))
+      (build-system r-build-system)
+      (propagated-inputs
+       (list r-biocgenerics
+             r-biocparallel
+             r-biostrings
+             r-bsgenome-hsapiens-ucsc-hg19-masked
+             r-bsgenome-hsapiens-ucsc-hg38-masked
+             r-dplyr
+             r-genomicranges
+             r-ggplot2
+             r-iranges
+             r-magrittr
+             r-minfi
+             r-purrr
+             r-s4vectors
+             r-shiny
+             r-stringi
+             r-stringr
+             r-tibble
+             r-tidyr
+             r-watermelon))
+      (home-page "https://github.com/pjhop/DNAmCrosshyb")
+      (synopsis "DNAmCrosshyb")
+      (description
+       "Helper functions to detect cross-hybridization on Illumina DNAm arrays")
+      (license license:gpl3))))
+
 (define-public r-ruvseq
   (package
     (name "r-ruvseq")
-- 
2.41.0

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