From unknown Tue Jun 17 22:27:31 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66914] Add r-bsgenome-hsapiens-ucsc-hg38-masked and r-dnamcrosshyb. 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From unknown Tue Jun 17 22:27:31 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66914] [PATCH 2/2] gnu: Add r-dnamcrosshyb. Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Fri, 03 Nov 2023 13:43:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 66914 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <66914@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 66914-submit@debbugs.gnu.org id=B66914.16990189549873 (code B ref 66914); Fri, 03 Nov 2023 13:43:02 +0000 Received: (at 66914) by debbugs.gnu.org; 3 Nov 2023 13:42:34 +0000 Received: from localhost ([127.0.0.1]:57310 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qyuRV-0002ZB-PN for submit@debbugs.gnu.org; Fri, 03 Nov 2023 09:42:34 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:39271) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qyuRS-0002Yw-Bq for 66914@debbugs.gnu.org; Fri, 03 Nov 2023 09:42:32 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1699018908; x=1700833309; bh=iBVcfwzr1fxo3WAt/CJZAaEv7lwdkU2KbqurMNWWOC0=; b=M5eGWQ5KnbLg uSzKFareH2BQAT0TSc9WRQvFXC0U7Jha8gc+Yh8TH01s4DCJFOalhxfHSf4ORQZn pfoAJiMUsv3bcExUaf+AxopK40Z3qCiXRTQMIFz+8d6Px9dyRm1k1pNcCUlsgStd 2irXry6udGjbp+HjNXX5KKgM3goVSlI= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0A829300159 for <66914@debbugs.gnu.org>; Fri, 3 Nov 2023 14:41:48 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 3 Nov 2023 14:41:47 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Fri, 3 Nov 2023 14:41:00 +0100 Message-ID: <045773685530dae0ff4ea375c219efc35f62a23b.1699018860.git.madalinionel.patrascu@mdc-berlin.de> X-Mailer: git-send-email 2.41.0 In-Reply-To: References: MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27974.007 X-TM-AS-Result: No-10--6.723400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCTiEPRj9j9rvwTlc9CcHMZerwqxtE531VIPc XuILVCba+6bZ/rijGKUKt3Sr5u90XQIdG4n3A2CkfOaYwP8dcX5IvK4LrXs1aSdEcnIP1FQIY2i R7K8WcsxwyxC8d/tsm3A2ZRYS2c+8Z0DBv2Mt8pfdCok3ibXlQT5//buCv56OlwV2iaAfSWcURS Scn+QSXt0H8LFZNFG73Yq8RVaZivWLapU6QcU0KqOBvn6GVGU4cGiqa2o86/mEClQvfmfZ4El6z QlIFt49 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--6.723400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27974.007 X-TM-SNTS-SMTP: DDB646F09D5B9B9DE73B1EE83537DE8340D498A9401D2E793554B760AC6D8E032000:F X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioconductor.scm (r-dnamcrosshyb): New variable. Change-Id: I19e332e6adf0ce9cc721d89bb74a1aa709778873 --- gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++++ 1 file changed, 45 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ac09a079b4..d5d5e9d25d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -12636,6 +12636,51 @@ (define-public r-dnabarcodes demultiplexed, i.e. assigned to their original reference barcode.") (license license:gpl2))) +;; It depends on Bioconductor packages +(define-public r-dnamcrosshyb + ;; There aren't any releases. + (let ((commit "fe8acb33667e81f00dcb84e0fa75c87ab2db5d8f") + (revision "1")) + (package + (name "r-dnamcrosshyb") + (version (git-version "0.0.0.9000" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pjhop/DNAmCrosshyb") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "12j1xsiqpvny5rp23z1az0k4cj5ajbcwkg65z00s16vywi2rx6nb")))) + (properties `((upstream-name . "DNAmCrosshyb"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biocparallel + r-biostrings + r-bsgenome-hsapiens-ucsc-hg19-masked + r-bsgenome-hsapiens-ucsc-hg38-masked + r-dplyr + r-genomicranges + r-ggplot2 + r-iranges + r-magrittr + r-minfi + r-purrr + r-s4vectors + r-shiny + r-stringi + r-stringr + r-tibble + r-tidyr + r-watermelon)) + (home-page "https://github.com/pjhop/DNAmCrosshyb") + (synopsis "DNAmCrosshyb") + (description + "Helper functions to detect cross-hybridization on Illumina DNAm arrays") + (license license:gpl3)))) + (define-public r-ruvseq (package (name "r-ruvseq") -- 2.41.0 From unknown Tue Jun 17 22:27:31 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66914] [PATCH 1/2] gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked. References: In-Reply-To: Resent-From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Original-Sender: "Debbugs-submit" Resent-CC: rekado@elephly.net, guix-patches@gnu.org Resent-Date: Fri, 03 Nov 2023 13:43:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 66914 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: To: <66914@debbugs.gnu.org> Cc: Ricardo Wurmus X-Debbugs-Original-Xcc: Ricardo Wurmus Received: via spool by 66914-submit@debbugs.gnu.org id=B66914.16990189589890 (code B ref 66914); Fri, 03 Nov 2023 13:43:02 +0000 Received: (at 66914) by debbugs.gnu.org; 3 Nov 2023 13:42:38 +0000 Received: from localhost ([127.0.0.1]:57312 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qyuRa-0002ZS-76 for submit@debbugs.gnu.org; Fri, 03 Nov 2023 09:42:38 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]:36137) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qyuRS-0002Yv-Bo for 66914@debbugs.gnu.org; Fri, 03 Nov 2023 09:42:37 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1699018907; x=1700833308; bh=TvywghxQubea+JM zmicosbhgDUVmLO/25ykZtMJphto=; b=PuBPoBcpSPXNOA19uSdeFtCr03xuyEN mW9/tOTRiNrAiR7iGkqTmMea8OHrDRpKrGfgJRmPSH9wpqypm9KchNx5kwZnX6Lj 35QNy2pueG4AHM9BV/JXvp+OExZlUsjReAMjg9HtPkYjCwzw41Bn3VuTVK7SzJYW 56mcEeXd37EU= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 7A59C300128 for <66914@debbugs.gnu.org>; Fri, 3 Nov 2023 14:41:47 +0100 (CET) Received: from Guix-Ubuntu18.04 (141.80.113.106) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 3 Nov 2023 14:41:46 +0100 From: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Date: Fri, 3 Nov 2023 14:40:59 +0100 Message-ID: X-Mailer: git-send-email 2.41.0 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.113.106] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27974.007 X-TM-AS-Result: No-10--8.408400-5.000000 X-TMASE-MatchedRID: 2wfub8HDRfP/R1NSMc2qCTiEPRj9j9rvwTlc9CcHMZerwqxtE531VGb6 PphVtfZgSMH8AVUS7BjuNT8xdcEnQwE+dA3RWUSvXke6tLU6lcKFzNNPDc6umOCbuVI7hVbLqbs +nJ/tFJHuEVrRP29I1vEZgBdsFg0s5uisLquWGszjpxdo/JwVm7+a+v4FF31uU72YOAMDJjieAi CmPx4NwBnUJ0Ek6yhjxEHRux+uk8hfNjF5BHUO+2DZR/yjkCMBfXasqZyBdBf/JEQJGHux0pOHv EEglhNNlloOE37vLpQ= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--8.408400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27974.007 X-TM-SNTS-SMTP: F65F539C14554FFE099215C2C50F6C265E201CDC3CEE8FAAD4BD639E909872342000:F X-Spam-Score: -2.3 (--) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38-masked): New variable. Change-Id: Ic1b646a3bd3b7262dd82f0972961c2e89628e90b --- gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++++ 1 file changed, 36 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index d79236ea26..ac09a079b4 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -68,6 +68,42 @@ (define-module (gnu packages bioconductor) ;;; Annotations +(define-public r-bsgenome-hsapiens-ucsc-hg38-masked + (package + (name "r-bsgenome-hsapiens-ucsc-hg38-masked") + (version "1.4.5") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BSgenome.Hsapiens.UCSC.hg38.masked" version + 'annotation)) + (sha256 + (base32 "0j71hdxqvvc0s8mc6jp6zk502mrf095qazj95yzzb4rm6sjvd20m")))) + (properties `((upstream-name . "BSgenome.Hsapiens.UCSC.hg38.masked"))) + (build-system r-build-system) + (propagated-inputs (list r-bsgenome r-bsgenome-hsapiens-ucsc-hg38 + r-genomeinfodb)) + (home-page + "https://bioconductor.org/packages/BSgenome.Hsapiens.UCSC.hg38.masked") + (synopsis + "Full masked genomic sequences for Homo sapiens (UCSC version hg38)") + (description + "This package provides the complete genome sequences for Homo sapiens as +provided by UCSC (genome hg38, based on assembly GRCh38.p14 since 2023/01/31). +The sequences are the same as in BSgenome.Hsapiens.UCSC.hg38, except that each +of them has the 4 following masks on top: + +@enumerate +@item the mask of assembly gaps (AGAPS mask); +@item the mask of intra-contig ambiguities (AMB mask); +@item the mask of repeats from @code{RepeatMasker} (RM mask); +@item the mask of repeats from Tandem Repeats Finder (TRF mask). +@end enumerate + +Only the AGAPS and AMB masks are \"active\" by default. The sequences are stored +in @code{MaskedDNAString} objects.") + (license license:artistic2.0))) + (define-public r-mafh5-gnomad-v3-1-2-grch38 (package (name "r-mafh5-gnomad-v3-1-2-grch38") base-commit: a0a377fdd6c873aeb6340afeddcd23b4ead7657d -- 2.41.0 From unknown Tue Jun 17 22:27:31 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: =?UTF-8?Q?M=C4=83d=C4=83lin?= Ionel =?UTF-8?Q?Patra=C8=99cu?= Subject: bug#66914: closed (Re: [bug#66914] [PATCH 1/2] gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked.) Message-ID: References: <87jzqxsfih.fsf@elephly.net> X-Gnu-PR-Message: they-closed 66914 X-Gnu-PR-Package: guix-patches Reply-To: 66914@debbugs.gnu.org Date: Sat, 04 Nov 2023 15:31:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1699111862-23323-1" This is a multi-part message in MIME format... ------------=_1699111862-23323-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66914: Add r-bsgenome-hsapiens-ucsc-hg38-masked and r-dnamcrosshyb. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66914@debbugs.gnu.org. --=20 66914: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66914 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1699111862-23323-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66914-done) by debbugs.gnu.org; 4 Nov 2023 15:30:44 +0000 Received: from localhost ([127.0.0.1]:35597 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qzIbk-00063e-7t for submit@debbugs.gnu.org; Sat, 04 Nov 2023 11:30:44 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21805) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qzIbh-00063V-VJ for 66914-done@debbugs.gnu.org; Sat, 04 Nov 2023 11:30:43 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1699111802; cv=none; d=zohomail.com; s=zohoarc; b=TVXOjelht93tcMqXQeWDwrwxCXromSxG8s3pWa6G8M1lyF60cRQP+k35oZRQ/IeUv2AACIkEEVcJlq619ALQOLUma2mwAjschCSwf5viExO4GBh17RM2Nw7tplcRlVJhOxSrDGBKb9Epb7JK4fSIadxVCNuGRHKb6z2GaVG/8GQ= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1699111802; h=Content-Type:Content-Transfer-Encoding:Cc:Cc:Date:Date:From:From:In-Reply-To:MIME-Version:Message-ID:References:Subject:Subject:To:To:Message-Id:Reply-To; bh=w7Afar2ggHRwUxN8KCZo+buu5V8ueRacXWS5MWRAEFI=; b=RIrYsbAyaHOBEhTSmncQYqH1CdIFqvNbRle/D2BGDmcdLdl+n45CSLx4NZTl8Rm6526a7plTFEYwRQjuH9smiapFqu3CRh1ocNCYVrAKuRRV+NOjohCSa1bMZ1qdhC9ZXUEt+JFs2gZ4f0W8Y7mDVUxIucM4qIsgLKzjTRVXISg= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1699111802; s=zoho; d=elephly.net; i=rekado@elephly.net; h=References:From:From:To:To:Cc:Cc:Subject:Subject:Date:Date:In-reply-to:Message-ID:MIME-Version:Content-Type:Content-Transfer-Encoding:Message-Id:Reply-To; bh=w7Afar2ggHRwUxN8KCZo+buu5V8ueRacXWS5MWRAEFI=; b=aN8tyQvrqpnYiv4HXOqBOsOEigd0tmlvdrrytLLRG1LAc2syAriuo7vEmy+UewG1 URtfoC3wFDFuipnCKbhQYLT/RkjoD7wDpeJV6udKoybL2MiOBbMEB15XNTqm6264jm9 UJdcOestMt7YPW5QllgsFCnhx6VRXx3EC5Ybjtb0= Received: from localhost (215-110-142-46.pool.kielnet.net [46.142.110.215]) by mx.zohomail.com with SMTPS id 1699111801488543.4880091400003; Sat, 4 Nov 2023 08:30:01 -0700 (PDT) References: User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: =?utf-8?B?TcSDZMSDbGlu?= Ionel =?utf-8?Q?Patra=C8=99cu?= Subject: Re: [bug#66914] [PATCH 1/2] gnu: Add r-bsgenome-hsapiens-ucsc-hg38-masked. Date: Sat, 04 Nov 2023 16:29:21 +0100 In-reply-to: Message-ID: <87jzqxsfih.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66914-done Cc: 66914-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) M=C4=83d=C4=83lin Ionel Patra=C8=99cu = writes: > * gnu/packages/bioconductor.scm > (r-bsgenome-hsapiens-ucsc-hg38-masked): New variable. I applied this series after moving r-dnamcrosshyb to (gnu packages bioinformatics) because it is neither a CRAN nor Bioconductor package. Thank you! --=20 Ricardo ------------=_1699111862-23323-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 3 Nov 2023 13:32:09 +0000 Received: from localhost ([127.0.0.1]:57298 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qyuHN-0002Jd-RZ for submit@debbugs.gnu.org; Fri, 03 Nov 2023 09:32:09 -0400 Received: from lists.gnu.org ([2001:470:142::17]:44180) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qyuHI-0002J8-CJ for submit@debbugs.gnu.org; Fri, 03 Nov 2023 09:32:04 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qyuGQ-0006i8-Ts for guix-patches@gnu.org; Fri, 03 Nov 2023 09:31:11 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qyuGK-0004pv-SJ for guix-patches@gnu.org; Fri, 03 Nov 2023 09:31:05 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-transfer-encoding:content-type:content-type:subject :subject:from:from:content-language:user-agent:mime-version:date :date:message-id:received; s=mdc; t=1699018253; x=1700832654; bh=OtSaJdQuot2kiLSe7xTRc5nOvIsXG4TsJQjNaBXexpY=; b=ObhB/KtxSSKD qaD5xs6xPFvdsTCUdVForb8wbAQy/f2PaUoAzCfrDVsHOpBYjSpnLxi4zQdZwsDj h2AaFPe/cCp802HQmF4XsHNSbJx+yBSJHTL44beLBFLAqZzQbnW9uuMwd5LroCBV QEu0XRxJSkHfBvAgt5r1pjH7H4beNIY= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0C0981601B5 for ; Fri, 3 Nov 2023 14:30:53 +0100 (CET) Received: from [192.168.1.248] (95.89.229.232) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 3 Nov 2023 14:30:52 +0100 Message-ID: Date: Fri, 3 Nov 2023 14:30:52 +0100 MIME-Version: 1.0 User-Agent: Mozilla Thunderbird Content-Language: en-US To: From: =?UTF-8?B?TcSDZMSDbGluIElvbmVsIFBhdHJhyJljdQ==?= Subject: Add r-bsgenome-hsapiens-ucsc-hg38-masked and r-dnamcrosshyb. Content-Type: text/plain; charset="UTF-8"; format=flowed Content-Transfer-Encoding: 7bit X-Originating-IP: [95.89.229.232] X-ClientProxiedBy: SW-IT-P-EX4.mdc-berlin.net (141.80.113.62) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27974.007 X-TM-AS-Result: No-10--0.624500-5.000000 X-TMASE-MatchedRID: MDaIk5g6V6D/R1NSMc2qCaubsOtSWY2QkZOl7WKIImrvXOvQVlExsK44 BbySpaAHNtDyE2Cl4w1uCpSBdG4ThsK21zBg2Klfvks7sIjSe3uxoV6+sdQhPUhHwhSQV+5KkSA +ZfVhxV3W29z2YXavGilxMkRK2GjRrVC1zmV235VTRXqfNn2yG0xqA4oahdnqzGWv9HvCj5U= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--0.624500-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27974.007 X-TM-SNTS-SMTP: FDF7A1B9F9B5203D6ADC7ED24F6CCC1A49421BBC7B33CF8EF03A6B5012C881B22000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=MadalinIonel.Patrascu@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -29 X-Spam_score: -3.0 X-Spam_bar: --- X-Spam_report: (-3.0 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, PYZOR_CHECK=1.392, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, TVD_SPACE_RATIO=0.001, T_SCC_BODY_TEXT_LINE=-0.01 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg38-masked and r-dnamcrosshyb): New variables. ------------=_1699111862-23323-1--