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Reply-To: bug#66913 <66913@debbugs.gnu.org> Date: Fri, 20 Jun 2025 14:24:20 +0000 retitle 66913 [PATCH] gnu: Add r-miamiplot. reassign 66913 guix-patches submitter 66913 "Afkhami, Navid" severity 66913 normal tag 66913 patch thanks From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 03 09:06:42 2023 Received: (at submit) by debbugs.gnu.org; 3 Nov 2023 13:06:42 +0000 Received: from localhost ([127.0.0.1]:57274 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qytsn-0001hL-AU for submit@debbugs.gnu.org; Fri, 03 Nov 2023 09:06:42 -0400 Received: from lists.gnu.org ([2001:470:142::17]:35344) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qytsg-0001h0-Oj for submit@debbugs.gnu.org; Fri, 03 Nov 2023 09:06:40 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qyts1-0001IC-00 for guix-patches@gnu.org; Fri, 03 Nov 2023 09:05:53 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qytrn-0005Hj-NE for guix-patches@gnu.org; Fri, 03 Nov 2023 09:05:50 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1699016734; x=1700831135; bh=nDfXjagchlFmvUe 4VWhIOQgkYY+HlimJNkt2V5cUKGo=; b=T/m2v9yUMU8vdgE+4bQtNOS/wYkAtBo pBkQzJnmTkC3EJ8OCE+ub7PdDL6jmygkCvgg4fxs9Tlw8g6v5bIb0QOD9YgZp8pH XxsV/zxvdRJXXNBMcECmZ0dDDOdWg8qN5hE+vHH92tiUX++G/EDtaJty6WKrNg0P BTERLLfo5fnk= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id CB6AB1601B5 for ; Fri, 3 Nov 2023 14:05:34 +0100 (CET) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 3 Nov 2023 14:05:34 +0100 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-miamiplot. 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Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06 --- gnu/packages/bioinformatics.scm | 34 +++++++++++++++++++++++++++++++++ 1 file changed, 34 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3a4bcd093a..e36593fd8e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10665,6 +10665,40 @@ (define-public r-scde ;; See https://github.com/hms-dbmi/scde/issues/38 (license license:gpl2))) +(define-public r-miamiplot + (let ((commit "beede9c5d6431b4d822aa42e064e01baeb5dd4a0") + (revision "1")) + (package + (name "r-miamiplot") + (version (git-version "1.1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/juliedwhite/miamiplot") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0wxxk1lk9jbf0imf59qp302ffasvs84idinkvzirs3dw9w3589n9")))) + (properties `((upstream-name . "miamiplot"))) + (build-system r-build-system) + (propagated-inputs (list r-checkmate + r-dplyr + r-ggplot2 + r-ggrepel + r-gridextra + r-magrittr + r-rlang)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/juliedwhite/miamiplot") + (synopsis "Create a ggplot2 miami plot") + (description + "This package generates a Miami plot with centered chromosome labels. +The output is a ggplot2 object. Users can specify which data they +want plotted on top vs. bottom , whether to display significance +line(s), what colors to give chromosomes, and what points to label.") + (license license:gpl2)))) + (define-public r-millefy (package (name "r-millefy") base-commit: 28ebbe2be8829a4767b9789c6353ad5e826d1164 -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Nov 03 09:11:47 2023 Received: (at 66913-done) by debbugs.gnu.org; 3 Nov 2023 13:11:47 +0000 Received: from localhost ([127.0.0.1]:57279 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qytxi-0001ok-UR for submit@debbugs.gnu.org; Fri, 03 Nov 2023 09:11:47 -0400 Received: from sender3-of-o58.zoho.com ([136.143.184.58]:21852) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qytxh-0001oc-DF for 66913-done@debbugs.gnu.org; Fri, 03 Nov 2023 09:11:46 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1699017066; cv=none; d=zohomail.com; s=zohoarc; b=XLxlu95TksJCHMXtJKhRah/CLCbmcw9ITkSl+VtH0r2vAd4OvnMQoMe4ZkhPZDYNWM7MsRwT67bUkfKQUv3vnjd5LCDal3RtVMVA4Im5wGJc1+qnJB5KRCm4Tel5eQx3L4Pvhqz3wRE5QqVOm+1qmwWeTnu479rKmc/sc9Fm1Dc= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1699017066; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=DsBMjktYxkI727XZHJAqrSBURNFhaXeeka7nTb/NqUr7rxY/Vb2ka8pqRmoMP71AZ3sNh28EIqWjLlI0ks6YhT2i/3r3JRCXfy8kGl0Y29lnCrNfvHx5r43ZF7d0PDIrrJMaTBxRSq0iVaNWHTvV92g1Dieu/Opx0+UMAcMxMPI= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1699017066; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=lPBhQcGp9AoUmRmT23sG4S/UVtfy0G4ynmG+9OjzgoE=; b=Dfq5vU2nI9cu2Qv2WfXwCimUsmSPSRb19Yl2OFYifgXsU1mGd3OUcVuBZc8kFb47 /A8RBR7FCxGDOZM3X6cnhRE9XQ3hTPtxPydlJmhdDkLoth1FAMnd4KxhWN8VGXv4Loq kElPm9e+guyf2lxRIofS10nTC8NTk0F36oxrzYH8= Received: from localhost (215-110-142-46.pool.kielnet.net [46.142.110.215]) by mx.zohomail.com with SMTPS id 1699017065277447.0343167621511; Fri, 3 Nov 2023 06:11:05 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66913-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-miamiplot. Date: Fri, 03 Nov 2023 14:10:42 +0100 Message-ID: <87zfzvrnh5.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66913-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied, thank you! -- Ricardo From unknown Fri Jun 20 07:24:20 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 02 Dec 2023 12:24:05 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator