Subject: bug#66913: closed ([PATCH] gnu: Add r-miamiplot.)

From: [email-masked] (GNU bug Tracking System)
Date: Fri, 03 Nov 2023 13:12:02 +0000

Your bug report

#66913: [PATCH] gnu: Add r-miamiplot.

which was filed against the guix-patches package, has been closed.

The explanation is attached below, along with your original report.
If you require more details, please reply to [email-masked].

-- 
66913: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66913
GNU Bug Tracking System
Contact [email-masked] with problems

Subject: [PATCH] gnu: Add r-miamiplot.
From: Ricardo Wurmus <[email-masked]>
To: [email-masked]
Date: Fri, 03 Nov 2023 14:10:42 +0100
List-Id: <debbugs-submit.debbugs.gnu.org>

Applied, thank you!

-- 
Ricardo

Subject: [PATCH] gnu: Add r-miamiplot.
From: "Afkhami, Navid" <[email-masked]>
To: <[email-masked]>
Cc: "Afkhami, Navid" <[email-masked]>
Date: Fri, 3 Nov 2023 13:05:29 +0000
List-Id: <debbugs-submit.debbugs.gnu.org>

* gnu/packages/bioinformatics.scm (r-miamiplot): New variable.

Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06
---
 gnu/packages/bioinformatics.scm | 34 +++++++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3a4bcd093a..e36593fd8e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10665,6 +10665,40 @@ (define-public r-scde
     ;; See https://github.com/hms-dbmi/scde/issues/38
     (license license:gpl2)))
 
+(define-public r-miamiplot
+  (let ((commit "beede9c5d6431b4d822aa42e064e01baeb5dd4a0")
+        (revision "1"))
+    (package
+      (name "r-miamiplot")
+      (version (git-version "1.1.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/juliedwhite/miamiplot")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0wxxk1lk9jbf0imf59qp302ffasvs84idinkvzirs3dw9w3589n9"))))
+      (properties `((upstream-name . "miamiplot")))
+      (build-system r-build-system)
+      (propagated-inputs (list r-checkmate
+                               r-dplyr
+                               r-ggplot2
+                               r-ggrepel
+                               r-gridextra
+                               r-magrittr
+                               r-rlang))
+      (native-inputs (list r-knitr))
+      (home-page "https://github.com/juliedwhite/miamiplot")
+      (synopsis "Create a ggplot2 miami plot")
+      (description
+       "This package generates a Miami plot with centered chromosome labels.
+The output is a ggplot2 object.  Users can specify which data they
+want plotted on top vs. bottom , whether to display significance
+line(s), what colors to give chromosomes, and what points to label.")
+      (license license:gpl2))))
+
 (define-public r-millefy
   (package
     (name "r-millefy")

base-commit: 28ebbe2be8829a4767b9789c6353ad5e826d1164
-- 
2.34.1