GNU bug report logs - #66843
[PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq.

Previous Next

Full log

View this message in rfc822 format

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <66843 <at> debbugs.gnu.org>
Cc: Ricardo Wurmus <rekado <at> elephly.net>
Subject: [bug#66843] [PATCH 11/11] gnu: Add r-radiogx.
Date: Tue, 31 Oct 2023 11:57:29 +0100

* gnu/packages/bioconductor.scm (r-radiogx): New variable.

Change-Id: I8fd06a18bd68f9a3baa2cc129d62aef06528bc97
---
 gnu/packages/bioconductor.scm | 44 +++++++++++++++++++++++++++++++++++
 1 file changed, 44 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 091cf98b5c..69adea13e5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7848,6 +7848,50 @@ (define-public r-r4rna
 with numerical methods for computing statistics for each.")
     (license license:gpl3)))
 
+(define-public r-radiogx
+  (package
+    (name "r-radiogx")
+    (version "2.4.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "RadioGx" version))
+       (sha256
+        (base32 "18zqfnwjil4mv7fgh4wvnniyybmyqkg0hk2wc57rcn0mlppa3602"))))
+    (properties `((upstream-name . "RadioGx")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-assertthat
+           r-biobase
+           r-biocgenerics
+           r-biocparallel
+           r-catools
+           r-coregx
+           r-data-table
+           r-downloader
+           r-magicaxis
+           r-matrixstats
+           r-rcolorbrewer
+           r-reshape2
+           r-s4vectors
+           r-scales
+           r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "https://bioconductor.org/packages/RadioGx")
+    (synopsis "Analysis of large-scale radio-genomic data")
+    (description
+     "This package is a computational tool box for radio-genomic analysis which
+integrates radio-response data, radio-biological modelling and comprehensive
+cell line annotations for hundreds of cancer cell lines.  The @code{RadioSet}
+class enables creation and manipulation of standardized datasets including
+information about cancer cells lines, radio-response assays and dose-response
+indicators.  Included methods allow fitting and plotting dose-response data
+using established radio-biological models along with quality control to validate
+results.  Additional functions related to fitting and plotting dose response
+curves, quantifying statistical correlation and calculating @acronym{AUC, area
+under the curve} or @acronym{SF, survival fraction} are included.")
+    (license license:gpl3)))
+
 (define-public r-raggedexperiment
   (package
     (name "r-raggedexperiment")
-- 
2.41.0

Previous Next

GNU bug tracking system
Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.