GNU bug report logs - #66843
[PATCH] gnu: Add r-radiogx, r-coregx, r-piano, r-bench, r-profmem, r-relations, r-magicaxis, r-celestial, r-nistunits, r-r4rna and r-r3cseq.

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Message #11 received at 66843 <at> debbugs.gnu.org (full text, mbox):

From: Mădălin Ionel Patrașcu
 <madalinionel.patrascu <at> mdc-berlin.de>
To: <66843 <at> debbugs.gnu.org>
Subject: [PATCH 01/11] gnu: Add r-r3cseq.
Date: Tue, 31 Oct 2023 11:57:19 +0100

* gnu/packages/bioconductor.scm (r-r3cseq): New variable.

Change-Id: Ib62db1415ef3988ccef88ad600192246964b4d84
---
 gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d3ff0b1127..dee72de2b7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7747,6 +7747,38 @@ (define-public r-hpar
 the Human Protein Atlas project.")
     (license license:artistic2.0)))
 
+(define-public r-r3cseq
+  (package
+    (name "r-r3cseq")
+    (version "1.46.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "r3Cseq" version))
+       (sha256
+        (base32 "1wpjsiy9qh45h3k5s79w4zhkma5h4gvyf2sa8l934mx0jl16k0q2"))))
+    (properties `((upstream-name . "r3Cseq")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-data-table
+           r-genomeinfodb
+           r-genomicranges
+           r-iranges
+           r-qvalue
+           r-rcolorbrewer
+           r-rsamtools
+           r-rtracklayer
+           r-sqldf
+           r-vgam))
+    (home-page "http://r3cseq.genereg.net/Site/index.html")
+    (synopsis
+     "Analysis of Chromosome conformation capture and Next-generation sequencing")
+    (description
+     "This package is used for the analysis of long-range chromatin interactions from
+3C-seq assay.")
+    (license license:gpl3)))
+
 (define-public r-raggedexperiment
   (package
     (name "r-raggedexperiment")

base-commit: d22d2a05c389207f8cdcf824be7738b1499a987c
-- 
2.41.0

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