From unknown Sat Jun 21 10:43:59 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66530] [PATCH] gnu: Add r-metacell. Resent-From: "Afkhami, Navid" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 13 Oct 2023 16:16:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 66530 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 66530@debbugs.gnu.org Cc: "Afkhami, Navid" X-Debbugs-Original-To: Received: via spool by submit@debbugs.gnu.org id=B.169721373015975 (code B ref -1); Fri, 13 Oct 2023 16:16:02 +0000 Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 16:15:30 +0000 Received: from localhost ([127.0.0.1]:47291 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKp0-00048H-9X for submit@debbugs.gnu.org; Fri, 13 Oct 2023 12:15:30 -0400 Received: from lists.gnu.org ([2001:470:142::17]:55984) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKox-0003mS-Mt for submit@debbugs.gnu.org; Fri, 13 Oct 2023 12:15:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKoU-0005Wv-4F for guix-patches@gnu.org; Fri, 13 Oct 2023 12:14:58 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKoR-0002cm-Hi for guix-patches@gnu.org; Fri, 13 Oct 2023 12:14:57 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697213691; x=1699028092; bh=HfYhUIjw5FeeRkH VC4S/Kdhmw3HLO6DOHjGRTP5LrT4=; b=P1aSebImQvD8/8wxqF1cwBJeMKu8s9/ aLIRKuXjQDYXDiK8d6SbbSeQFiAUpzoJ1pKxza5ye4bor+QmJ4H3UfEuuDLzw4HJ +wAqeTDBEdKJnWuCrFRdYk3L/dZFBV4/Tq7nZAoIXHa9vM7bLo4kMIn/ZKIE/woC 2hAJy+owJ9aQ= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 3D23E160167 for ; Fri, 13 Oct 2023 18:14:51 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 18:14:50 +0200 From: "Afkhami, Navid" Date: Fri, 13 Oct 2023 16:14:43 +0000 Message-ID: <5cf244a75edf748f180e87b4607a67126260115f.1697213683.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-AS-Result: No-10--5.200400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJN6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIMIubEPSkNnJsUh +OkaOhpcV5MniPWJBrQAdOkL0w2geKgAlgjPhYpZvTnqYKYXTRhDkv2q7d+VDlwV2iaAfSWcURS Scn+QSXt0H8LFZNFG73Yq8RVaZivWmLEn9syYec2jmviYAnAO9CXZSV0MUS2SyFL5xqNseSUsu3 c/ceBs0 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.200400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-SNTS-SMTP: 3099E1870F2B3C238980E2BB68A0E9A8CD1DFD5B914B073A915DB8393EFF00922000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (r-metacell): New variable. --- gnu/packages/bioinformatics.scm | 60 +++++++++++++++++++++++++++++++++ 1 file changed, 60 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cb0bdf766e..45afde699d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10285,6 +10285,66 @@ (define-public r-markdownreports discovered.") (license license:gpl3)))) +(define-public r-metacell + (let ((commit "d6a6926d103ee0cb34a611c753572429c94a53d9") + (revision "1")) + (package + (name "r-metacell") + (version (git-version "0.3.41" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/metacell/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zrsckr3y35x37mj3ibm6scyqx925s84wzrz1i42fnm9n3msc265")))) + (properties `((upstream-name . "metacell"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster + r-cowplot + r-data-table + r-dbscan + r-domc + r-dplyr + r-entropy + r-ggplot2 + r-graph + r-igraph + r-kernsmooth + r-magrittr + r-matrix + r-matrixstats + r-pdist + r-pheatmap + r-plyr + r-rcolorbrewer + r-rcurl + r-rgraphviz + r-slam + r-singlecellexperiment + r-svglite + r-tgconfig + r-tgstat + r-tgutil + r-tidyr + r-umap + r-umap + r-zoo)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/tanaylab/metacell/") + (synopsis "Meta cell analysis for single cell RNA-seq data") + (description + "This package facilitates the analysis of single-cell RNA-seq UMI matrices. +It does this by computing partitions of a cell similarity graph into +small homogeneous groups of cells, which are defined as metacells (MCs). +The derived MCs are then used for building different representations of +the data, allowing matrix or 2D graph visualization forming a basis for +analysis of cell types, subtypes, transcriptional gradients,cell-cycle +variation, gene modules and their regulatory models and more.") + (license license:expat)))) + (define-public r-snapatac (package (name "r-snapatac") base-commit: dcfd4d9c4827ca6bfebeec46fe6bb8373c425a1c prerequisite-patch-id: 8b3f1b30e7ca1f6ddb21bf801faad91cce276dfd prerequisite-patch-id: 86f04eb38885c80e1fa302cec734581778e62c26 prerequisite-patch-id: d5cebe9646097c611915c8b796a94ff0d1831343 prerequisite-patch-id: 675ed63512dcf5b145a929d0097b1bb7e7f1c389 prerequisite-patch-id: 8a7046dfe2c6c18892fed37a877f66be5be7f96e -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Tue Oct 17 08:32:19 2023 Received: (at control) by debbugs.gnu.org; 17 Oct 2023 12:32:19 +0000 Received: from localhost ([127.0.0.1]:58796 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjFD-0004Bi-JI for submit@debbugs.gnu.org; Tue, 17 Oct 2023 08:32:19 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21112) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjF8-0004BV-VE for control@debbugs.gnu.org; Tue, 17 Oct 2023 08:32:18 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697545905; cv=none; d=zohomail.com; s=zohoarc; b=FXX7r1zccCNyD5GQy3z0iGtcvxr7yJ6xvXrNr2+Htm/VOjoJsa/5MSlnALmZEKkojfLzO65eDoC162Um9gAyo1v0HZrJfDOzx/eUjjMieMhQygTp59KDtRMkzRz4k7qv8RcZPPbdWvR8C/te6cfnwahqf4x7r76PUXGnEP72sT0= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697545905; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:To:To:Message-Id:Reply-To:Subject:Cc; bh=A2OFROw83Gp2jIHwpbID6odi5l7ESv9nuyixNi0h610=; b=P7/jvTg0E5CfnWdwzwYz7PBMfwCMbb8pzNm9Wi6fzOg93tRznFYkNCTTBgf+Sz1+nFh8b8l+E7Vcci9z2vOAaTxTbRKRzUiahqOEXAlGakB9I2JQOdsS27mXKvkuq+55UO/mDnT9EQWXf+epcTDWP6bamw4uP2X/uqgzYHaWhlc= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697545905; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=A2OFROw83Gp2jIHwpbID6odi5l7ESv9nuyixNi0h610=; b=YfAW6W94d+u5NhSferyiIDGo1FQamPbeLAMTGp6J1LiA4t+wGNAtX61SzffRSqKh 5NxC20QX2FItUz6Qs06foW18PphrmCkaP8tyq2Xb7MJXaJv38ntV+jaPKvdHRiXycLg E1fnMaUhJppHHRf9rNP5UuKHoponkxwlemUJLOgo= Received: from localhost (14-108-142-46.pool.kielnet.net [46.142.108.14]) by mx.zohomail.com with SMTPS id 1697545903741776.3236170423603; Tue, 17 Oct 2023 05:31:43 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: control@debbugs.gnu.org Subject: Date: Tue, 17 Oct 2023 14:30:42 +0200 Message-ID: <87r0ltjuqb.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 2.0 (++) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. 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Content preview: merge 66524 66526 66527 66528 66529 66530 -- Ricardo Content analysis details: (2.0 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- 0.0 SPF_HELO_NONE SPF: HELO does not publish an SPF Record -0.0 SPF_PASS SPF: sender matches SPF record -0.0 RCVD_IN_DNSWL_NONE RBL: Sender listed at https://www.dnswl.org/, no trust [136.143.188.51 listed in list.dnswl.org] 0.0 RCVD_IN_MSPIKE_H5 RBL: Excellent reputation (+5) [136.143.188.51 listed in wl.mailspike.net] 0.0 RCVD_IN_MSPIKE_WL Mailspike good senders 2.0 BLANK_SUBJECT Subject is present but empty X-Debbugs-Envelope-To: control X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: 1.0 (+) merge 66524 66526 66527 66528 66529 66530 -- Ricardo From unknown Sat Jun 21 10:43:59 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#66530: closed ([PATCH] gnu: Add r-metacell.) Message-ID: References: <87mswhjumh.fsf@elephly.net> <5cf244a75edf748f180e87b4607a67126260115f.1697213683.git.Navid.Afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 66530 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66530@debbugs.gnu.org Date: Tue, 17 Oct 2023 12:35:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1697546102-16654-1" This is a multi-part message in MIME format... ------------=_1697546102-16654-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66530: [PATCH] gnu: Add r-metacell. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66530@debbugs.gnu.org. --=20 66530: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66530 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1697546102-16654-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66530-done) by debbugs.gnu.org; 17 Oct 2023 12:34:32 +0000 Received: from localhost ([127.0.0.1]:58801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHM-0004JM-0v for submit@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21128) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHJ-0004JC-Os for 66530-done@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697546042; cv=none; d=zohomail.com; s=zohoarc; b=ibUH62l+sJj5LzlR4Bvc+1KzkzzUyCBODratPt0eqUg449/fXBkcbwibagXQwdtSxtGA9lRAS9fFt6yx75myiGKVLPlQiqNvJ6SI5AJL39JPC+tB1GG74miReJzUzCwXh1qiMKl86RvjDbSqh/86TPiaPLrHooZMmKWpamIb9zI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697546042; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=m1Z0nzMwu2zJgfz6+mgXOPZM6efXOW8VyJ2iFy63r50QAfN3r8gXelpIt1IfpT5MREoNkj9quO/lLYtpUNlghia5RakmyQM8Glk22lufWrz27yor5jKyBM5q+xFNrKsFVfX0iLmKRMcxzyyw56kpiXahO9nAiMyopJEHshzEPpM= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697546042; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=iXuEtg1Wkr0YxHQSV5P3peI2FQOW3rm5weACDHo2BoCvuKFd0Cj6AXq2+LkcNexA neFR5R9Urj2h0R+AoaOd4uIygfyJXh5KdoAsq1i6HtqSJ48cNhd6JhogGNFcFlir2of hQ2V3XK1nhUoIal8wc4URQIvaXVyjzqr6VNNkVr4= Received: from localhost (14-108-142-46.pool.kielnet.net [46.142.108.14]) by mx.zohomail.com with SMTPS id 169754604131222.911162218667414; Tue, 17 Oct 2023 05:34:01 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66530-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-metacell. Date: Tue, 17 Oct 2023 14:33:33 +0200 Message-ID: <87mswhjumh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66530-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches. I applied them after some massaging. -- Ricardo ------------=_1697546102-16654-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 16:15:30 +0000 Received: from localhost ([127.0.0.1]:47291 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKp0-00048H-9X for submit@debbugs.gnu.org; Fri, 13 Oct 2023 12:15:30 -0400 Received: from lists.gnu.org ([2001:470:142::17]:55984) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKox-0003mS-Mt for submit@debbugs.gnu.org; Fri, 13 Oct 2023 12:15:29 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKoU-0005Wv-4F for guix-patches@gnu.org; Fri, 13 Oct 2023 12:14:58 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKoR-0002cm-Hi for guix-patches@gnu.org; Fri, 13 Oct 2023 12:14:57 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697213691; x=1699028092; bh=HfYhUIjw5FeeRkH VC4S/Kdhmw3HLO6DOHjGRTP5LrT4=; b=P1aSebImQvD8/8wxqF1cwBJeMKu8s9/ aLIRKuXjQDYXDiK8d6SbbSeQFiAUpzoJ1pKxza5ye4bor+QmJ4H3UfEuuDLzw4HJ +wAqeTDBEdKJnWuCrFRdYk3L/dZFBV4/Tq7nZAoIXHa9vM7bLo4kMIn/ZKIE/woC 2hAJy+owJ9aQ= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id 3D23E160167 for ; Fri, 13 Oct 2023 18:14:51 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 18:14:50 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-metacell. Date: Fri, 13 Oct 2023 16:14:43 +0000 Message-ID: <5cf244a75edf748f180e87b4607a67126260115f.1697213683.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-AS-Result: No-10--5.200400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJN6fjezFKxXHArcxrzwsv5uwTlc9CcHMZerwqxtE531VICu qghmtWfXXt3JNptef3p4Zvg4N7yewiq+GZ9ZHxIhuW77/y896sj4qCLIu0mtIMIubEPSkNnJsUh +OkaOhpcV5MniPWJBrQAdOkL0w2geKgAlgjPhYpZvTnqYKYXTRhDkv2q7d+VDlwV2iaAfSWcURS Scn+QSXt0H8LFZNFG73Yq8RVaZivWmLEn9syYec2jmviYAnAO9CXZSV0MUS2SyFL5xqNseSUsu3 c/ceBs0 X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--5.200400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-SNTS-SMTP: 3099E1870F2B3C238980E2BB68A0E9A8CD1DFD5B914B073A915DB8393EFF00922000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioinformatics.scm (r-metacell): New variable. --- gnu/packages/bioinformatics.scm | 60 +++++++++++++++++++++++++++++++++ 1 file changed, 60 insertions(+) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cb0bdf766e..45afde699d 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10285,6 +10285,66 @@ (define-public r-markdownreports discovered.") (license license:gpl3)))) +(define-public r-metacell + (let ((commit "d6a6926d103ee0cb34a611c753572429c94a53d9") + (revision "1")) + (package + (name "r-metacell") + (version (git-version "0.3.41" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/metacell/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0zrsckr3y35x37mj3ibm6scyqx925s84wzrz1i42fnm9n3msc265")))) + (properties `((upstream-name . "metacell"))) + (build-system r-build-system) + (propagated-inputs (list r-cluster + r-cowplot + r-data-table + r-dbscan + r-domc + r-dplyr + r-entropy + r-ggplot2 + r-graph + r-igraph + r-kernsmooth + r-magrittr + r-matrix + r-matrixstats + r-pdist + r-pheatmap + r-plyr + r-rcolorbrewer + r-rcurl + r-rgraphviz + r-slam + r-singlecellexperiment + r-svglite + r-tgconfig + r-tgstat + r-tgutil + r-tidyr + r-umap + r-umap + r-zoo)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/tanaylab/metacell/") + (synopsis "Meta cell analysis for single cell RNA-seq data") + (description + "This package facilitates the analysis of single-cell RNA-seq UMI matrices. +It does this by computing partitions of a cell similarity graph into +small homogeneous groups of cells, which are defined as metacells (MCs). +The derived MCs are then used for building different representations of +the data, allowing matrix or 2D graph visualization forming a basis for +analysis of cell types, subtypes, transcriptional gradients,cell-cycle +variation, gene modules and their regulatory models and more.") + (license license:expat)))) + (define-public r-snapatac (package (name "r-snapatac") base-commit: dcfd4d9c4827ca6bfebeec46fe6bb8373c425a1c prerequisite-patch-id: 8b3f1b30e7ca1f6ddb21bf801faad91cce276dfd prerequisite-patch-id: 86f04eb38885c80e1fa302cec734581778e62c26 prerequisite-patch-id: d5cebe9646097c611915c8b796a94ff0d1831343 prerequisite-patch-id: 675ed63512dcf5b145a929d0097b1bb7e7f1c389 prerequisite-patch-id: 8a7046dfe2c6c18892fed37a877f66be5be7f96e -- 2.34.1 ------------=_1697546102-16654-1-- From unknown Sat Jun 21 10:43:59 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#66524: closed ([PATCH] gnu: Add r-metacell.) Message-ID: References: <87mswhjumh.fsf@elephly.net> <809e0ecd33120c180188d230a6db9cf6540fe28a.1697211633.git.Navid.Afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 66524 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66524@debbugs.gnu.org Date: Tue, 17 Oct 2023 12:35:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1697546103-16654-3" This is a multi-part message in MIME format... ------------=_1697546103-16654-3 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66530: [PATCH] gnu: r-svglite: Update to 2.1.2. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66524@debbugs.gnu.org. --=20 66530: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66530 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1697546103-16654-3 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66530-done) by debbugs.gnu.org; 17 Oct 2023 12:34:32 +0000 Received: from localhost ([127.0.0.1]:58801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHM-0004JM-0v for submit@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21128) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHJ-0004JC-Os for 66530-done@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697546042; cv=none; d=zohomail.com; s=zohoarc; b=ibUH62l+sJj5LzlR4Bvc+1KzkzzUyCBODratPt0eqUg449/fXBkcbwibagXQwdtSxtGA9lRAS9fFt6yx75myiGKVLPlQiqNvJ6SI5AJL39JPC+tB1GG74miReJzUzCwXh1qiMKl86RvjDbSqh/86TPiaPLrHooZMmKWpamIb9zI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697546042; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=m1Z0nzMwu2zJgfz6+mgXOPZM6efXOW8VyJ2iFy63r50QAfN3r8gXelpIt1IfpT5MREoNkj9quO/lLYtpUNlghia5RakmyQM8Glk22lufWrz27yor5jKyBM5q+xFNrKsFVfX0iLmKRMcxzyyw56kpiXahO9nAiMyopJEHshzEPpM= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697546042; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=iXuEtg1Wkr0YxHQSV5P3peI2FQOW3rm5weACDHo2BoCvuKFd0Cj6AXq2+LkcNexA neFR5R9Urj2h0R+AoaOd4uIygfyJXh5KdoAsq1i6HtqSJ48cNhd6JhogGNFcFlir2of hQ2V3XK1nhUoIal8wc4URQIvaXVyjzqr6VNNkVr4= Received: from localhost (14-108-142-46.pool.kielnet.net [46.142.108.14]) by mx.zohomail.com with SMTPS id 169754604131222.911162218667414; Tue, 17 Oct 2023 05:34:01 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66530-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-metacell. Date: Tue, 17 Oct 2023 14:33:33 +0200 Message-ID: <87mswhjumh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66530-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches. I applied them after some massaging. -- Ricardo ------------=_1697546103-16654-3 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 15:41:33 +0000 Received: from localhost ([127.0.0.1]:47141 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKI9-0006sZ-2y for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:41:33 -0400 Received: from lists.gnu.org ([2001:470:142::17]:41668) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKI5-0006s8-3I for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:41:31 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKHY-0000Q4-K3 for guix-patches@gnu.org; Fri, 13 Oct 2023 11:40:56 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKHU-0004lL-If for guix-patches@gnu.org; Fri, 13 Oct 2023 11:40:55 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697211647; x=1699026048; bh=k98ZbaKJuXT0paP DX7zNLOMNtcAOeVCNRwHRa1NDrXQ=; b=jr8zysRRh7wTtbxgYzK/17C9IrXBWGc dTv1tIlBXmR4Q7IAocYsMSsZvTDByk3SNZXk6MhMHt0RPuipwjy/r7bqYtYnoOlg d8cOJYWSQY5z6lG2gC6FkHZrOqthO2TJm9egzvSEg5S59bNHoF2dB/GCKTMdPv/B dWcIE43AwK0w= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id D44FB3001C1 for ; Fri, 13 Oct 2023 17:40:47 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 17:40:47 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: r-svglite: Update to 2.1.2. Date: Fri, 13 Oct 2023 15:40:33 +0000 Message-ID: <809e0ecd33120c180188d230a6db9cf6540fe28a.1697211633.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-AS-Result: No-10--2.733400-5.000000 X-TMASE-MatchedRID: dvE1IS+ta30v+0FNnM7lDQPZZctd3P4BC//1TMV5chPIFck3f6fvyEw2 OHQlqD0CvgneSHwyr514wy0KIXhzm1ixiakOenKy194/5X9VfCwJlr1xKkE5uXibY+6n81PkycO hvTXTlouSkIUZyUQUJ1365UWdO2/F0N7DjAdxZNTi8zVgXoAltsIJ+4gwXrEtwrbXMGDYqV8JC+ VZi2gQEdFERuYw2DdMeqdQx9iHR0CO8pkQn+lbhvHV8x3JHVECCBBLnvthwl6sl4hSnTqrcqHjP 2HHYEQnIcwGHf56atDxnamk7QGHOMbG0bMSRYDWFhnoKW4f7Mf1c8RJIeS1QFmKmfpzNHMN X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.733400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-SNTS-SMTP: 6076F06B9F1FAC063DFCFBB85C5D4DDE45A3589A25DCE5F507C69DC090C8A5A12000:F Received-SPF: pass client-ip=194.95.238.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=c2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/statistics.scm (r-svglite): Update to 2.1.2. --- gnu/packages/statistics.scm | 25 ++++++++++--------------- 1 file changed, 10 insertions(+), 15 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 0975dec477..dc7d3c7923 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1346,28 +1346,23 @@ (define-public r-gdtools (define-public r-svglite (package (name "r-svglite") - (version "2.1.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "svglite" version)) (sha256 - (base32 - "0mmcipyqq4hs8fnb7301gdhl9ic4m80f1fp2x6z5vc61xrlh2w28")))) + (base32 "0c00djvlnf4qr30srh3xjnx1valqq8grm5ib0q4485z8gphn7hf2")))) + (properties `((upstream-name . "svglite"))) (build-system r-build-system) - (inputs - (list libpng zlib)) - (propagated-inputs - (list r-cpp11 r-systemfonts)) - (native-inputs - (list r-knitr)) - (home-page "https://github.com/hadley/svglite") - (synopsis "SVG graphics device") + (inputs (list libpng zlib)) + (propagated-inputs (list r-cpp11 r-systemfonts)) + (native-inputs (list r-knitr)) + (home-page "https://svglite.r-lib.org") + (synopsis "SVG graphics tool") (description - "@code{svglite} is a graphics device that produces clean -@dfn{SVG} (Scalable Vector Graphics) output, suitable for use on the web, or -hand editing. Compared to the built-in @code{svg()}, @code{svglite} is -considerably faster, produces smaller files, and leaves text as is.") + "This package offers an R graphics device for scalable vector graphics. +svglite is a fork of the older R@code{SvgDevice} package.") (license license:gpl2+))) (define-public r-assertthat base-commit: 21b44bbc7c7b36eaaf19eb2f92ce654a44b70302 -- 2.34.1 ------------=_1697546103-16654-3-- From unknown Sat Jun 21 10:43:59 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#66526: closed ([PATCH] gnu: Add r-metacell.) Message-ID: References: <87mswhjumh.fsf@elephly.net> X-Gnu-PR-Message: they-closed 66526 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66526@debbugs.gnu.org Date: Tue, 17 Oct 2023 12:35:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1697546103-16654-5" This is a multi-part message in MIME format... ------------=_1697546103-16654-5 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66530: [PATCH] gnu: r-tgconfig: Update to (git-version 0.1.2 revision comm= it). which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66526@debbugs.gnu.org. --=20 66530: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66530 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1697546103-16654-5 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66530-done) by debbugs.gnu.org; 17 Oct 2023 12:34:32 +0000 Received: from localhost ([127.0.0.1]:58801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHM-0004JM-0v for submit@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21128) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHJ-0004JC-Os for 66530-done@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697546042; cv=none; d=zohomail.com; s=zohoarc; b=ibUH62l+sJj5LzlR4Bvc+1KzkzzUyCBODratPt0eqUg449/fXBkcbwibagXQwdtSxtGA9lRAS9fFt6yx75myiGKVLPlQiqNvJ6SI5AJL39JPC+tB1GG74miReJzUzCwXh1qiMKl86RvjDbSqh/86TPiaPLrHooZMmKWpamIb9zI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697546042; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=m1Z0nzMwu2zJgfz6+mgXOPZM6efXOW8VyJ2iFy63r50QAfN3r8gXelpIt1IfpT5MREoNkj9quO/lLYtpUNlghia5RakmyQM8Glk22lufWrz27yor5jKyBM5q+xFNrKsFVfX0iLmKRMcxzyyw56kpiXahO9nAiMyopJEHshzEPpM= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697546042; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=iXuEtg1Wkr0YxHQSV5P3peI2FQOW3rm5weACDHo2BoCvuKFd0Cj6AXq2+LkcNexA neFR5R9Urj2h0R+AoaOd4uIygfyJXh5KdoAsq1i6HtqSJ48cNhd6JhogGNFcFlir2of hQ2V3XK1nhUoIal8wc4URQIvaXVyjzqr6VNNkVr4= Received: from localhost (14-108-142-46.pool.kielnet.net [46.142.108.14]) by mx.zohomail.com with SMTPS id 169754604131222.911162218667414; Tue, 17 Oct 2023 05:34:01 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66530-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-metacell. Date: Tue, 17 Oct 2023 14:33:33 +0200 Message-ID: <87mswhjumh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66530-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches. I applied them after some massaging. -- Ricardo ------------=_1697546103-16654-5 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 15:52:37 +0000 Received: from localhost ([127.0.0.1]:47205 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKSq-0007ZY-Ib for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:52:37 -0400 Received: from lists.gnu.org ([2001:470:142::17]:38256) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKSn-0007Z6-Fu for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:52:35 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKSL-00015I-16 for guix-patches@gnu.org; Fri, 13 Oct 2023 11:52:05 -0400 Received: from c2062.mx.srv.dfn.de ([194.95.238.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKSF-0006Qr-C3 for guix-patches@gnu.org; Fri, 13 Oct 2023 11:52:04 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697212315; x=1699026716; bh=Th4RKiE/ueODkQ8 fytxGMfCeWP6UQGNFRv3Uti85q9Y=; b=KHQd291dQ4ETn4QrlbGe4n7QVerSP8J JV5GqYKLQdDI95fN3zznMgYylptYNfepfLYxgj8v1i0kLQFd891BZaNZiddF78of 7AJRFGVE0BSewkYrI2+Lynpo8aUU/TzGPNx3tNirjgQX2SAHT1xDVzskTXH33JYK lc59glPR7Ots= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by c2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0169F3001C1 for ; Fri, 13 Oct 2023 17:51:54 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 17:51:54 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: r-tgconfig: Update to (git-version 0.1.2 revision commit). 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Content preview: * gnu/packages/statistics.scm (r-tgconfig): Update to (git-version 0.1.2 revision commit). --- gnu/packages/statistics.scm | 35 ++++++++++++++++++++ 1 file changed, 20 insertions(+), 15 [...] Content analysis details: (1.7 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- 0.1 URIBL_SBL_A Contains URL's A record listed in the Spamhaus SBL blocklist [URIs: bitbucket.org] 0.6 URIBL_SBL Contains an URL's NS IP listed in the Spamhaus SBL blocklist [URIs: bitbucket.org] 0.9 SPF_FAIL SPF: sender does not match SPF record (fail) [SPF failed: Please see http://www.openspf.org/Why?s=mfrom; id=navid.afkhami%40mdc-berlin.de; ip=2001%3A470%3A142%3A%3A17; r=debbugs.gnu.org] -0.0 SPF_HELO_PASS SPF: HELO matches SPF record X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: 0.7 (/) * gnu/packages/statistics.scm (r-tgconfig): Update to (git-version 0.1.2 revision commit). --- gnu/packages/statistics.scm | 35 ++++++++++++++++++++--------------- 1 file changed, 20 insertions(+), 15 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index dc7d3c7923..a21b47a9d3 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -6561,30 +6561,35 @@ (define-public r-tgstat (license license:gpl2)))) (define-public r-tgconfig - (let ((changeset "1e02c7614713bd0866c46f0c679a058f8c6d627e") + (let ((commit "15cf199436ae0b2ac0006b2ca7f0aeeb5c9d4445") (revision "1")) (package (name "r-tgconfig") - (version (string-append "0.0.0.9000-" revision "." (string-take changeset 7))) + (version (git-version "0.1.2" revision commit)) (source (origin - (method hg-fetch) - (uri (hg-reference - (url "https://bitbucket.org/tanaylab/tgconfig") - (changeset changeset))) - (file-name (string-append name "-" version "-checkout")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/tgconfig") + (commit commit))) + (file-name (git-file-name name version)) (sha256 - (base32 - "0xy6c7s7mn1yx191154bwbv1bl424bnvc80syqpl1vdl28ba46rj")))) + (base32 "159m8hhbk9ip2fdy6zsa96v0173q1awcrzdz2rr2796awfaxjgx1")))) + (properties `((upstream-name . "tgconfig"))) (build-system r-build-system) - (propagated-inputs - (list r-yaml)) - (home-page "https://bitbucket.org/tanaylab/tgconfig/") + (propagated-inputs (list r-yaml)) + (home-page "https://github.com/tanaylab/tgconfig") (synopsis "Infrastructure for managing package parameters") (description - "The goal of tgconfig is to provide infrastructure for managing package -parameters.") - (license license:gpl3)))) + "This is a package to provide infrastructure for managing package parameters. +Parameters are easy to get in relevant functions within a package, +and rrror is thrown if a parameter is missing. Developers are able +to register parameters and set their default value in a config file +that is part of the package in YAML format, and users are able to +override parameters using their own YAML. Users get an exception +when trying to override a parameter that was not registered, and +can load multiple parameters to the current environment.") + (license license:gpl3+)))) (define-public r-catterplots (let ((commit "ae17cd5e49ddda4ecfe0eba8a4c21df8c88e72c4") base-commit: 21b44bbc7c7b36eaaf19eb2f92ce654a44b70302 prerequisite-patch-id: 8b3f1b30e7ca1f6ddb21bf801faad91cce276dfd -- 2.34.1 ------------=_1697546103-16654-5-- From unknown Sat Jun 21 10:43:59 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#66527: closed ([PATCH] gnu: Add r-metacell.) Message-ID: References: <87mswhjumh.fsf@elephly.net> <78b0eabd77a637e8ce76f2ef7994dd88eddf063a.1697212635.git.Navid.Afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 66527 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66527@debbugs.gnu.org Date: Tue, 17 Oct 2023 12:35:03 +0000 Content-Type: multipart/mixed; boundary="----------=_1697546103-16654-7" This is a multi-part message in MIME format... ------------=_1697546103-16654-7 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66530: [PATCH 1/2] gnu: Remove r-tgstat. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66527@debbugs.gnu.org. --=20 66530: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66530 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1697546103-16654-7 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66530-done) by debbugs.gnu.org; 17 Oct 2023 12:34:32 +0000 Received: from localhost ([127.0.0.1]:58801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHM-0004JM-0v for submit@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21128) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHJ-0004JC-Os for 66530-done@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697546042; cv=none; d=zohomail.com; s=zohoarc; b=ibUH62l+sJj5LzlR4Bvc+1KzkzzUyCBODratPt0eqUg449/fXBkcbwibagXQwdtSxtGA9lRAS9fFt6yx75myiGKVLPlQiqNvJ6SI5AJL39JPC+tB1GG74miReJzUzCwXh1qiMKl86RvjDbSqh/86TPiaPLrHooZMmKWpamIb9zI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697546042; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=m1Z0nzMwu2zJgfz6+mgXOPZM6efXOW8VyJ2iFy63r50QAfN3r8gXelpIt1IfpT5MREoNkj9quO/lLYtpUNlghia5RakmyQM8Glk22lufWrz27yor5jKyBM5q+xFNrKsFVfX0iLmKRMcxzyyw56kpiXahO9nAiMyopJEHshzEPpM= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697546042; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=iXuEtg1Wkr0YxHQSV5P3peI2FQOW3rm5weACDHo2BoCvuKFd0Cj6AXq2+LkcNexA neFR5R9Urj2h0R+AoaOd4uIygfyJXh5KdoAsq1i6HtqSJ48cNhd6JhogGNFcFlir2of hQ2V3XK1nhUoIal8wc4URQIvaXVyjzqr6VNNkVr4= Received: from localhost (14-108-142-46.pool.kielnet.net [46.142.108.14]) by mx.zohomail.com with SMTPS id 169754604131222.911162218667414; Tue, 17 Oct 2023 05:34:01 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66530-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-metacell. Date: Tue, 17 Oct 2023 14:33:33 +0200 Message-ID: <87mswhjumh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66530-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches. I applied them after some massaging. -- Ricardo ------------=_1697546103-16654-7 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 15:58:10 +0000 Received: from localhost ([127.0.0.1]:47237 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKYD-0007qo-KH for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:58:09 -0400 Received: from lists.gnu.org ([2001:470:142::17]:35358) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKY9-0007qE-Lm for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:58:07 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKXh-0003fW-AX for guix-patches@gnu.org; Fri, 13 Oct 2023 11:57:37 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKXf-0007Y4-1p for guix-patches@gnu.org; Fri, 13 Oct 2023 11:57:37 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697212651; x=1699027052; bh=RxNA6JOmerSy7Z0 YDmR3lOZRYkdDCUwl/h2L2ED6GQw=; b=iJXxwIkuR4GlaWUq3K3ZYLgvZxsKqCY dBJwdBRa//reWr89gxmLBsBWKN6b5/sGpOWTYPqo/v7ONWQ3dTgYDNM2CP3xAY3C ruJCjTaf2xAX31zh67wRPBfcOpadMA5gGysoQLNwRf8rH6IRf5Xq4IZ3r3Exs53g 16VhStT6Xrp0= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 0B9A5A0196 for ; Fri, 13 Oct 2023 17:57:31 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 17:57:30 +0200 From: "Afkhami, Navid" To: Subject: [PATCH 1/2] gnu: Remove r-tgstat. Date: Fri, 13 Oct 2023 15:57:14 +0000 Message-ID: <78b0eabd77a637e8ce76f2ef7994dd88eddf063a.1697212635.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-AS-Result: No-10--2.689800-5.000000 X-TMASE-MatchedRID: LFOyoH/XvLjgUbgLLPhW5hF4zyLyne+ATJDl9FKHbrkR0p2RbWIUIgbo TDS3zulAcjTcMkuJPYmDs24hteATnwYcH09cOokpqhcdnP91eXFh0Eb5uGGI1CBQRBOQhaJiJEb gebEoSmWslio5IdWDdNUf8/gZ0Wa4Q6dytbMjseXGL//8mlodAwK0ZgbTOeKU7rencS+jsJiUg5 UD6AlF0uO1cUsW4/41ElOOOz3JPpijxYyRBa/qJcFwgTvxipFa9xS3mVzWUuAojN1lLei7RXBJM oLu3c43gP+jIGHgZQYrd6qFivaZRTqosUTNlZuEfnsTtyiBaUcA4xJpJtBH/UmQ0Ih1xh6rsJVq d0/jmOtZb8OhxrCgBDVIWe9PfG2D9leimmhcnaXe4hkjgmJMlhA8jgfAt5oQ X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--2.689800-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-SNTS-SMTP: 3C97F6AA83BFC1D95518E1B9D17DCE93CD8C2BCF0BDC40017D5AEE65B7C5F3012000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -42 X-Spam_score: -4.3 X-Spam_bar: ---- X-Spam_report: (-4.3 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001, URIBL_SBL_A=0.1 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.7 (+) X-Spam-Report: Spam detection software, running on the system "debbugs.gnu.org", has NOT identified this incoming email as spam. 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Content preview: * gnu/packages/statistics.scm (r-tgstat): Delete variable. --- gnu/packages/statistics.scm | 35 1 file changed, 35 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index a21b47a9d3..7d6ec71e6f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -6525,41 +6525,6 @@ (d [...] Content analysis details: (1.7 points, 10.0 required) pts rule name description ---- ---------------------- -------------------------------------------------- 0.1 URIBL_SBL_A Contains URL's A record listed in the Spamhaus SBL blocklist [URIs: bitbucket.org] 0.6 URIBL_SBL Contains an URL's NS IP listed in the Spamhaus SBL blocklist [URIs: bitbucket.org] 0.9 SPF_FAIL SPF: sender does not match SPF record (fail) [SPF failed: Please see http://www.openspf.org/Why?s=mfrom; id=navid.afkhami%40mdc-berlin.de; ip=2001%3A470%3A142%3A%3A17; r=debbugs.gnu.org] -0.0 SPF_HELO_PASS SPF: HELO matches SPF record X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: 0.7 (/) * gnu/packages/statistics.scm (r-tgstat): Delete variable. --- gnu/packages/statistics.scm | 35 ----------------------------------- 1 file changed, 35 deletions(-) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index a21b47a9d3..7d6ec71e6f 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -6525,41 +6525,6 @@ (define-public r-forcats manually \"recoding\").") (license license:gpl3))) -(define-public r-tgstat - (let ((changeset "4f8e60c03598f49aff6f5beeab40f2b995377e9f") - (revision "1")) - (package - (name "r-tgstat") - (version (string-append "1.0.2-" revision "." (string-take changeset 7))) - (source - (origin - (method hg-fetch) - (uri (hg-reference - (url "https://bitbucket.org/tanaylab/tgstat") - (changeset changeset))) - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "0ilkkyximy77zbncm91kdfqbxf0qyndg16pd3q3p6a3xc9qcmxvn")))) - (build-system r-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - (add-after 'unpack 'fix-isnan - (lambda _ - (substitute* "src/tgstat.h" - (("#define isnan ::isnan") - "#define isnan std::isnan")) - #t))))) - (propagated-inputs - (list r-rcpp)) - (home-page "https://bitbucket.org/tanaylab/tgstat/") - (synopsis "Tanay's group statistical utilities") - (description - "The goal of tgstat is to provide fast and efficient statistical -tools.") - (license license:gpl2)))) - (define-public r-tgconfig (let ((commit "15cf199436ae0b2ac0006b2ca7f0aeeb5c9d4445") (revision "1")) base-commit: dcfd4d9c4827ca6bfebeec46fe6bb8373c425a1c prerequisite-patch-id: 8b3f1b30e7ca1f6ddb21bf801faad91cce276dfd prerequisite-patch-id: 86f04eb38885c80e1fa302cec734581778e62c26 -- 2.34.1 ------------=_1697546103-16654-7-- From unknown Sat Jun 21 10:43:59 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#66528: closed ([PATCH] gnu: Add r-metacell.) Message-ID: References: <87mswhjumh.fsf@elephly.net> X-Gnu-PR-Message: they-closed 66528 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66528@debbugs.gnu.org Date: Tue, 17 Oct 2023 12:35:04 +0000 Content-Type: multipart/mixed; boundary="----------=_1697546104-16654-9" This is a multi-part message in MIME format... ------------=_1697546104-16654-9 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66530: [PATCH 2/2] gnu: Add r-tgstat. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66528@debbugs.gnu.org. --=20 66530: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66530 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1697546104-16654-9 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66530-done) by debbugs.gnu.org; 17 Oct 2023 12:34:32 +0000 Received: from localhost ([127.0.0.1]:58801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHM-0004JM-0v for submit@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21128) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHJ-0004JC-Os for 66530-done@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697546042; cv=none; d=zohomail.com; s=zohoarc; b=ibUH62l+sJj5LzlR4Bvc+1KzkzzUyCBODratPt0eqUg449/fXBkcbwibagXQwdtSxtGA9lRAS9fFt6yx75myiGKVLPlQiqNvJ6SI5AJL39JPC+tB1GG74miReJzUzCwXh1qiMKl86RvjDbSqh/86TPiaPLrHooZMmKWpamIb9zI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697546042; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=m1Z0nzMwu2zJgfz6+mgXOPZM6efXOW8VyJ2iFy63r50QAfN3r8gXelpIt1IfpT5MREoNkj9quO/lLYtpUNlghia5RakmyQM8Glk22lufWrz27yor5jKyBM5q+xFNrKsFVfX0iLmKRMcxzyyw56kpiXahO9nAiMyopJEHshzEPpM= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697546042; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=iXuEtg1Wkr0YxHQSV5P3peI2FQOW3rm5weACDHo2BoCvuKFd0Cj6AXq2+LkcNexA neFR5R9Urj2h0R+AoaOd4uIygfyJXh5KdoAsq1i6HtqSJ48cNhd6JhogGNFcFlir2of hQ2V3XK1nhUoIal8wc4URQIvaXVyjzqr6VNNkVr4= Received: from localhost (14-108-142-46.pool.kielnet.net [46.142.108.14]) by mx.zohomail.com with SMTPS id 169754604131222.911162218667414; Tue, 17 Oct 2023 05:34:01 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66530-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-metacell. Date: Tue, 17 Oct 2023 14:33:33 +0200 Message-ID: <87mswhjumh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66530-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches. I applied them after some massaging. -- Ricardo ------------=_1697546104-16654-9 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 15:58:16 +0000 Received: from localhost ([127.0.0.1]:47240 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKYK-0007rE-12 for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:58:16 -0400 Received: from lists.gnu.org ([2001:470:142::17]:35372) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKYF-0007qd-FO for submit@debbugs.gnu.org; Fri, 13 Oct 2023 11:58:15 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKXn-0003fj-4C for guix-patches@gnu.org; Fri, 13 Oct 2023 11:57:43 -0400 Received: from b2062.mx.srv.dfn.de ([194.95.234.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKXl-0007Yg-Dj for guix-patches@gnu.org; Fri, 13 Oct 2023 11:57:42 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :references:in-reply-to:x-mailer:message-id:date:date:subject :subject:from:from:received; s=mdc; t=1697212657; x=1699027058; bh=eqpH2KQWEs8nB17mQSGqrKTVlO9pVihtLne87bKIAAc=; b=Q9HHYuGLcbAS RBPrSxW6y8tjOtFcX2yURfpnd+cl8KeeRJTDYAoPFVBwNA6YrD351kYJkccXv8wf fB8Mwd63NR9wPRr9do/1TEN14TUDqDLr2POFOWdBrHSqY2mUA1ePIHAMg9zCFOkI 8b09Oxct/6NBuwHM4Z1xT4cfyD0aLhk= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by b2062.mx.srv.dfn.de (Postfix) with ESMTPS id BF86E160157 for ; Fri, 13 Oct 2023 17:57:37 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 17:57:37 +0200 From: "Afkhami, Navid" To: Subject: [PATCH 2/2] gnu: Add r-tgstat. Date: Fri, 13 Oct 2023 15:57:15 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 In-Reply-To: <78b0eabd77a637e8ce76f2ef7994dd88eddf063a.1697212635.git.Navid.Afkhami@mdc-berlin.de> References: <78b0eabd77a637e8ce76f2ef7994dd88eddf063a.1697212635.git.Navid.Afkhami@mdc-berlin.de> MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-AS-Result: No-10-0.337400-5.000000 X-TMASE-MatchedRID: 4RK2gbhxGJP/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEO5n zG+dPwIaRRa406V/YwyBUGewL2YXt8Z8zsjIitoJnVTWWiNp+v/kwFzTzcgzhDGQt2RbsLmqvER UVOAFoxh7MSP7SLpuGI/h+VzXVDnD3Ot4hTskDRLdCok3ibXlQeuLFZZYlisfHxPMjOKY7A+u65 UDD0aDgsRB0bsfrpPI34T9cYMsdwxZ5LUFaJ6jmVs47Pth3Ab+i+EgGRdySQi1qxORHHBAK2HAF SwV1KC88vdDayQwL5Cqu75uQnVnLt1PALiA7B+s5kMsfZrjn3Rriwk488+qotqkGs/LBEZa8EFY CHVRuBROWg+GSIftMY4TDtwwKftL X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10-0.337400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-SNTS-SMTP: 4830BFD48A60F45D0F9E6343C9BDB09B60174AE2CE77F15BA1E0D3E2B75C51342000:F Received-SPF: pass client-ip=194.95.234.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=b2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/cran.scm (r-tgstat): New variable. --- gnu/packages/cran.scm | 23 +++++++++++++++++++++++ 1 file changed, 23 insertions(+) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1c37635ea5..de31f44dbd 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -3257,6 +3257,29 @@ (define-public r-tgp noisy black-box functions.") (license license:lgpl2.0+))) +(define-public r-tgstat + (package + (name "r-tgstat") + (version "2.3.24") + (source + (origin + (method url-fetch) + (uri (cran-uri "tgstat" version)) + (sha256 + (base32 "0czd3j7z30jgb03813s0jc0701ypnwpkkq7var6n6f6cj7sdvc0l")))) + (properties `((upstream-name . "tgstat"))) + (build-system r-build-system) + (native-inputs (list r-knitr)) + (home-page "https://cran.r-project.org/package=tgstat") + (synopsis "Amos Tanay's Group High Performance Statistical Utilities") + (description + "This package provides a collection of high-performance utilities. +It can be used to compute distances, correlations, autocorrelations, +clustering, and other tasks. It also contains a graph clustering +algorithm described in MetaCell analysis of single-cell RNA-seq +data using K-nn graph partitions.") + (license license:gpl2))) + (define-public r-tidyft (package (name "r-tidyft") -- 2.34.1 ------------=_1697546104-16654-9-- From unknown Sat Jun 21 10:43:59 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Afkhami, Navid" Subject: bug#66529: closed ([PATCH] gnu: Add r-metacell.) Message-ID: References: <87mswhjumh.fsf@elephly.net> <3bae0cbdbc255c3e8157fe0557b13d8d5492d589.1697213063.git.Navid.Afkhami@mdc-berlin.de> X-Gnu-PR-Message: they-closed 66529 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66529@debbugs.gnu.org Date: Tue, 17 Oct 2023 12:35:04 +0000 Content-Type: multipart/mixed; boundary="----------=_1697546104-16654-11" This is a multi-part message in MIME format... ------------=_1697546104-16654-11 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66530: [PATCH] gnu: Add r-tgutil. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66529@debbugs.gnu.org. --=20 66530: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66530 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1697546104-16654-11 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66530-done) by debbugs.gnu.org; 17 Oct 2023 12:34:32 +0000 Received: from localhost ([127.0.0.1]:58801 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHM-0004JM-0v for submit@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:32 -0400 Received: from sender4-of-o51.zoho.com ([136.143.188.51]:21128) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qsjHJ-0004JC-Os for 66530-done@debbugs.gnu.org; Tue, 17 Oct 2023 08:34:30 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697546042; cv=none; d=zohomail.com; s=zohoarc; b=ibUH62l+sJj5LzlR4Bvc+1KzkzzUyCBODratPt0eqUg449/fXBkcbwibagXQwdtSxtGA9lRAS9fFt6yx75myiGKVLPlQiqNvJ6SI5AJL39JPC+tB1GG74miReJzUzCwXh1qiMKl86RvjDbSqh/86TPiaPLrHooZMmKWpamIb9zI= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697546042; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=m1Z0nzMwu2zJgfz6+mgXOPZM6efXOW8VyJ2iFy63r50QAfN3r8gXelpIt1IfpT5MREoNkj9quO/lLYtpUNlghia5RakmyQM8Glk22lufWrz27yor5jKyBM5q+xFNrKsFVfX0iLmKRMcxzyyw56kpiXahO9nAiMyopJEHshzEPpM= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697546042; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=+OCiisPse9axQuNCuHLKujKS0hi5ftOUr++K3O8ZfnI=; b=iXuEtg1Wkr0YxHQSV5P3peI2FQOW3rm5weACDHo2BoCvuKFd0Cj6AXq2+LkcNexA neFR5R9Urj2h0R+AoaOd4uIygfyJXh5KdoAsq1i6HtqSJ48cNhd6JhogGNFcFlir2of hQ2V3XK1nhUoIal8wc4URQIvaXVyjzqr6VNNkVr4= Received: from localhost (14-108-142-46.pool.kielnet.net [46.142.108.14]) by mx.zohomail.com with SMTPS id 169754604131222.911162218667414; Tue, 17 Oct 2023 05:34:01 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66530-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-metacell. Date: Tue, 17 Oct 2023 14:33:33 +0200 Message-ID: <87mswhjumh.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66530-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Thanks for the patches. I applied them after some massaging. -- Ricardo ------------=_1697546104-16654-11 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 16:05:12 +0000 Received: from localhost ([127.0.0.1]:47262 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKf2-0002QF-9E for submit@debbugs.gnu.org; Fri, 13 Oct 2023 12:05:12 -0400 Received: from lists.gnu.org ([2001:470:142::17]:52822) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrKez-0002Py-9F for submit@debbugs.gnu.org; Fri, 13 Oct 2023 12:05:10 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKeV-0001Lb-Ic for guix-patches@gnu.org; Fri, 13 Oct 2023 12:04:39 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrKeR-0000XE-Rl for guix-patches@gnu.org; Fri, 13 Oct 2023 12:04:39 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697213070; x=1699027471; bh=QJ8AO+egEYGDcV7 jpHEiypHNWNil7LXrXEKXcMKzbbM=; b=KrClI/qRonzqUsjUni45csHs9286mXU 433EFiI/oxopCZ56O/g+3J8AP76YOmA2J+dOEt5qfmLFm2pAGqQKpoM3LOUgeX5e P0YZNdQvU6eJ6PJI9+0J2IX03I74Epq5O0LzgvbBuGWBALW9kmOV9GhEapWnl3L/ Btc95bJZNlnc= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id BB65EA0196 for ; Fri, 13 Oct 2023 18:04:30 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 18:04:28 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-tgutil. Date: Fri, 13 Oct 2023 16:04:23 +0000 Message-ID: <3bae0cbdbc255c3e8157fe0557b13d8d5492d589.1697213063.git.Navid.Afkhami@mdc-berlin.de> X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX1.mdc-berlin.net (141.80.113.54) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-AS-Result: No-10--4.083400-5.000000 X-TMASE-MatchedRID: /+von0vPuFH/R1NSMc2qCU7nLUqYrlslFIuBIWrdOePfUZT83lbkEIyd mby1eQX7K1OIo1kOJjPuNT8xdcEnQwE+dA3RWUSvnVTWWiNp+v/F0kjYVlocoaY5ZGw7wyeHsht nDV+JCwSD/SpuYoqPDS5rYfHE0OO9qOJ+h+s5fKarm7DrUlmNkIAy6p60ZV62fJ5/bZ6npdjKay T/BQTiGv5fvMZNNUw/LOdYKnQ7SwABSrGp4LbU7EPq7GKol3cf7bnP2nCXI7yt2k9rNXFvwzJSu rQGfBWHfCuGUJvgGxRcmvq/Zr23+eWrs/+5064veFv61dDRnYf0c5qUjgqLKvYlQeU3xrH0XtGJ m2N/3yI= X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.083400-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27934.000 X-TM-SNTS-SMTP: 09A03BC912A03661755ADCEEEB2EB4A91B8505D3287D74FA175C8ADE51406EC52000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/statistics.scm (r-tgutil): New variable. --- gnu/packages/statistics.scm | 37 +++++++++++++++++++++++++++++++++++++ 1 file changed, 37 insertions(+) diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index 7d6ec71e6f..7bdcc00cac 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -6556,6 +6556,43 @@ (define-public r-tgconfig can load multiple parameters to the current environment.") (license license:gpl3+)))) +(define-public r-tgutil + (let ((commit "0e4a2e84e5cf1f74bc66df0a3d8eac89633fd7b1") + (revision "1")) + (package + (name "r-tgutil") + (version (git-version "0.1.15" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tanaylab/tgutil") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0pmacpzhrigprlpl8b5j4xz7l110ifw98017xwk569dghbf8zrq1")))) + (properties `((upstream-name . "tgutil"))) + (build-system r-build-system) + (propagated-inputs (list r-broom + r-cowplot + r-data-table + r-dplyr + r-ggplot2 + r-glue + r-magrittr + r-matrix + r-matrixstats + r-qlcmatrix + r-readr + r-rlang + r-scales + r-tibble + r-tidyr)) + (home-page "https://github.com/tanaylab/tgutil") + (synopsis "Simple utility functions for Tanay lab code") + (description "Shared utility functions for multiple Tanay lab packages.") + (license license:gpl3)))) + (define-public r-catterplots (let ((commit "ae17cd5e49ddda4ecfe0eba8a4c21df8c88e72c4") (revision "3")) base-commit: dcfd4d9c4827ca6bfebeec46fe6bb8373c425a1c prerequisite-patch-id: 8b3f1b30e7ca1f6ddb21bf801faad91cce276dfd prerequisite-patch-id: 86f04eb38885c80e1fa302cec734581778e62c26 prerequisite-patch-id: d5cebe9646097c611915c8b796a94ff0d1831343 prerequisite-patch-id: 675ed63512dcf5b145a929d0097b1bb7e7f1c389 -- 2.34.1 ------------=_1697546104-16654-11--