From unknown Sat Sep 20 07:11:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66516] [PATCH 0/2] gnu: dealii: Update to 9.5.1. Resent-From: "Paul A. Patience" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 13 Oct 2023 12:35:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: report 66516 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 66516@debbugs.gnu.org Cc: "Paul A. Patience" X-Debbugs-Original-To: guix-patches@gnu.org Received: via spool by submit@debbugs.gnu.org id=B.169720046013341 (code B ref -1); Fri, 13 Oct 2023 12:35:02 +0000 Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 12:34:20 +0000 Received: from localhost ([127.0.0.1]:45418 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHMy-0003T6-6V for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:34:20 -0400 Received: from lists.gnu.org ([2001:470:142::17]:41374) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHMt-0003Sp-MH for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:34:19 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrHMP-0004cf-Gq for guix-patches@gnu.org; Fri, 13 Oct 2023 08:33:46 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrHML-0005dy-3Q for guix-patches@gnu.org; Fri, 13 Oct 2023 08:33:44 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1697200409; x=1697459609; bh=uIO/E8fpCE/HFCB7K5vsQmxmbHllankHor2RLQyvzs4=; h=Date:To:From:Cc:Subject:Message-ID:Feedback-ID:From:To:Cc:Date: Subject:Reply-To:Feedback-ID:Message-ID:BIMI-Selector; b=f6ARLaTohw0tNTGF4NvPig/NWlOvIQcuKVFZ8fsZalmQyl50ID6/INgi1aulB6Fvg E1Dk5A6xUcnzsNs50ghs0Gk2jlF48d6lGmOzOZyL83rJyt3MwuKWHxfyQyMnR02HsK 23lDh56grqghXCs4EDefc3phHH9qUrPQeGRCFWraoCNJcw6YYV7/BRs/4J7VDFPBca pc4hGvl3uclfoK27B7v4IdiuiL/qBgAfSI5uBxL0Q28kxebf8IoTUnYmB08bDnA3uR tJ0UPulevrGO/l2u8C0IVOKNJxsiVXXza5/oK8EUvTNH6OdpZluVpz2aP+o9Ts9p/H 9OHQrkRukQ0wA== Date: Fri, 13 Oct 2023 12:33:17 +0000 From: "Paul A. Patience" Message-ID: Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=185.70.40.22; envelope-from=paul@apatience.com; helo=mail-4022.proton.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) Hi, The prerequisite-patch-id refers to the Trilinos build fix [1], which is no= t strictly required (dealii-openmpi will just not build without it). Unfortunately, I am flummoxed by the unset-cpath phase's fixing the build w= ith Kokkos. [1]: https://bugs.gnu.org/66462 Paul A. Patience (2): gnu: Add kokkos. gnu: dealii: Update to 9.5.1. gnu/packages/maths.scm | 79 +++++++++++++++++++++++++++++++++++++++--- 1 file changed, 74 insertions(+), 5 deletions(-) base-commit: f4e8baf3806e79d7111d2943859865ae4ee0b59d prerequisite-patch-id: 15b686dd7cb363b42432fb9bc83701cd33bed641 --=20 2.41.0 From unknown Sat Sep 20 07:11:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66516] [PATCH 1/2] gnu: Add kokkos. Resent-From: "Paul A. Patience" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 13 Oct 2023 12:37:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 66516 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 66516@debbugs.gnu.org Cc: "Paul A. Patience" Received: via spool by 66516-submit@debbugs.gnu.org id=B66516.169720057113585 (code B ref 66516); Fri, 13 Oct 2023 12:37:03 +0000 Received: (at 66516) by debbugs.gnu.org; 13 Oct 2023 12:36:11 +0000 Received: from localhost ([127.0.0.1]:45428 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHOl-0003X2-6V for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:36:11 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]:40649) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHOj-0003Wj-JA for 66516@debbugs.gnu.org; Fri, 13 Oct 2023 08:36:10 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1697200540; x=1697459740; bh=lySA3Cwu3W3bQXgmeRudMme+iZtNhx9mPKrD8yuN9OY=; h=Date:To:From:Cc:Subject:Message-ID:In-Reply-To:References: Feedback-ID:From:To:Cc:Date:Subject:Reply-To:Feedback-ID: Message-ID:BIMI-Selector; b=Gn31R1o9hQwOlz0aXgNd+DCeL8ln4NPvPPwwOODA4VjHIx/foy2Ynfqnee82SHqzH vfNxymk/ZLpsN2gZeeDvtQwTSofA6NltV7mGOU6YFSGL06M4XAk2f0DH3WXfNXMECp 9C/d7vboJ8Zqm+nKtM+RkHgEwaCxZh7EbHrGhaEIbOspeCVv8ITEtIagiSgSbh2lX6 fV5vgjLcfqOUpAUg/YiQe32LZLWBVhwZA8VTizPVG6lLMiOtG0P9VxO9AInR2B26p6 sJKoZ9lPyxMGe0w/UIciRnn0U9FNWNB+0uiwmU+qNFbZeVztajiqJruPPiYoEsG6tg qQLcqMad29i2g== Date: Fri, 13 Oct 2023 12:35:37 +0000 From: "Paul A. Patience" Message-ID: In-Reply-To: References: Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (kokkos): New variable. --- gnu/packages/maths.scm | 51 ++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 51 insertions(+) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 7a87fcb54e..2762e13a4f 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -116,6 +116,7 @@ (define-module (gnu packages maths) #:use-module (gnu packages cyrus-sasl) #:use-module (gnu packages datamash) #:use-module (gnu packages dbm) + #:use-module (gnu packages disk) #:use-module (gnu packages documentation) #:use-module (gnu packages elf) #:use-module (gnu packages emacs) @@ -6403,6 +6404,56 @@ (define-public lpsolve revised simplex and the branch-and-bound methods.") (license license:lgpl2.1+))) =20 +(define-public kokkos + (package + (name "kokkos") + (version "4.1.00") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kokkos/kokkos") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "15kjpa54ssrrbid9h2nr94nh85qna5c4vq2152i4iy7gaagigy3c")) + (modules '((guix build utils))) + (snippet + ;; Remove bundled googletest. + #~(delete-file-recursively "tpls/gtest")))) + (build-system cmake-build-system) + (arguments + (list #:configure-flags + ;; deal.II uses only the serial backend, so do not enable the + ;; others yet. + #~(list "-DBUILD_SHARED_LIBS=3DON" + "-DKokkos_ENABLE_SERIAL=3DON" + "-DKokkos_ENABLE_TESTS=3DON" + "-DKokkos_ENABLE_EXAMPLES=3DON" + "-DKokkos_ENABLE_HWLOC=3DON" + "-DKokkos_ENABLE_MEMKIND=3DON") + #:phases + #~(modify-phases %standard-phases + (add-after 'install-license-files 'remove-cruft + (lambda _ + (delete-file + (string-append #$output "/share/doc/" + #$name "-" #$version + "/LICENSE_FILE_HEADER"))))))) + (native-inputs + (list googletest python)) + (inputs + (list `(,hwloc "lib") memkind)) + (home-page "https://github.com/kokkos/kokkos") + (synopsis "C++ abstractions for parallel execution and data management= ") + (description + "Kokkos Core implements a programming model in C++ for writing perfor= mance +portable applications targeting all major HPC platforms. For that purpose= it +provides abstractions for both parallel execution of code and data managem= ent. +Kokkos is designed to target complex node architectures with N-level memor= y +hierarchies and multiple types of execution resources.") + (license license:asl2.0))) ; With LLVM exception + ;; Private Trilinos package for dealii-openmpi (similar to ;; trilinos-serial-xyce and trilinos-parallel-xyce). ;; This version is the latest known to be compatible with deal.II [1]. --=20 2.41.0 From unknown Sat Sep 20 07:11:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66516] [PATCH 2/2] gnu: dealii: Update to 9.5.1. Resent-From: "Paul A. Patience" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 13 Oct 2023 12:37:03 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 66516 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 66516@debbugs.gnu.org Cc: "Paul A. Patience" Received: via spool by 66516-submit@debbugs.gnu.org id=B66516.169720059113619 (code B ref 66516); Fri, 13 Oct 2023 12:37:03 +0000 Received: (at 66516) by debbugs.gnu.org; 13 Oct 2023 12:36:31 +0000 Received: from localhost ([127.0.0.1]:45432 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHP4-0003Xb-LN for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:36:31 -0400 Received: from mail-4317.proton.ch ([185.70.43.17]:47231) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHP1-0003XM-GQ for 66516@debbugs.gnu.org; Fri, 13 Oct 2023 08:36:29 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1697200557; x=1697459757; bh=WyoZWyzd73Le/BRM1igxQjTta1YGazm6bH7u0KvOqNs=; h=Date:To:From:Cc:Subject:Message-ID:In-Reply-To:References: Feedback-ID:From:To:Cc:Date:Subject:Reply-To:Feedback-ID: Message-ID:BIMI-Selector; b=aNq/BmelN89X2szQJ6MmTNj3Ce/pNNHCXXG6GAtPNe/aD8e3J5eioc31GW8q+5hRD JeIwDlQ0FUXaUphXmS+EpSIcli9LhLGl/S7X1TfTsW5ggB75tiMeCkE0a064HHj7Pw qPm6YOEYfHkgEU3e08tZro4XB/q2Pl7sT9eq9k4Jm38H6nG8karY3917uTKJXwJN5J tTTKpWmSAh7qNxWCU/RBOplB2SA9LiiXm/4GB/D9TpkraDoaosP+GKpYUnjL1MlsM8 1lcEfvi7umM3qk8c9ax+Q+snKFUyJvzTTWCF3NHMf/qlCX76cjpXy2PihxMyP7HqLp 0VeIAhtiZfaDw== Date: Fri, 13 Oct 2023 12:35:45 +0000 From: "Paul A. Patience" Message-ID: <68f367b14a8e01145318a9cd2525a36e436d9963.1697199836.git.paul@apatience.com> In-Reply-To: References: Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) * gnu/packages/maths.scm (dealii): Update to 9.5.1. [propagated-inputs]: Add kokkos. [arguments]<#:phases>: Add 'unset-cpath' phase. (dealii-openmpi)[propagated-inputs]: Remove kokkos. [arguments]<#:phases>: Delete 'unset-cpath' phase. --- gnu/packages/maths.scm | 28 +++++++++++++++++++++++----- 1 file changed, 23 insertions(+), 5 deletions(-) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 2762e13a4f..e8d3cfed99 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -6613,17 +6613,17 @@ (define trilinos-for-dealii-openmpi (define-public dealii (package (name "dealii") - (version "9.4.0") + (version "9.5.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/dealii/dealii/releases/" "download/v" version "/dealii-" version ".tar.g= z")) (sha256 - (base32 "0v73q6f35f2yrjihaq6vh9lma07qc4cdv75nwmc3c5yrdh07g1i3")) + (base32 "0phgcfnil4rb41xipsdbm4lxrymlqxbiccakg3pkm3a8wqsva658")) (modules '((guix build utils))) (snippet - ;; Remove bundled boost, muparser, TBB and UMFPACK. + ;; Remove bundled boost, Kokkos, muparser, TBB and UMFPACK. #~(delete-file-recursively "bundled")))) (build-system cmake-build-system) (outputs '("out" "doc")) @@ -6647,6 +6647,7 @@ (define-public dealii ;; the requisite interpreter to its native inputs. (list boost hdf5 + kokkos suitesparse ; For UMFPACK. sundials tbb)) @@ -6671,6 +6672,18 @@ (define-public dealii "/examples"))) #:phases #~(modify-phases %standard-phases + ;; Without unsetting CPATH, the build fails with the follow= ing + ;; error (similar to ): + ;; + ;; /gnu/store/=E2=80=A6-gcc-11.3.0/include/c++/math.h:30:= 16: fatal error: math.h: No such file or directory + ;; 30 | # include_next + ;; | ^~~~~~~~ + ;; + ;; Why does unsetting CPATH magically fix the error? + ;; TODO: Properly fix this issue. + (add-after 'set-paths 'unset-cpath + (lambda _ + (unsetenv "CPATH"))) (add-after 'install 'remove-build-logs ;; These build logs leak the name of the build directory = by ;; storing the values of CMAKE_SOURCE_DIR and @@ -6702,7 +6715,7 @@ (define-public dealii-openmpi scalapack))) (propagated-inputs (modify-inputs (package-propagated-inputs dealii) - (delete "hdf5" "sundials") + (delete "hdf5" "kokkos" "sundials") (prepend hdf5-parallel-openmpi openmpi p4est-openmpi @@ -6713,7 +6726,12 @@ (define-public dealii-openmpi (arguments (substitute-keyword-arguments (package-arguments dealii) ((#:configure-flags flags) - #~(cons "-DDEAL_II_WITH_MPI=3DON" #$flags)))) + #~(cons "-DDEAL_II_WITH_MPI=3DON" #$flags)) + ((#:phases phases #~%standard-phases) + #~(modify-phases #$phases + ;; The build failure fixed by this phase does not manifest whe= n + ;; Kokkos is included via Trilinos. + (delete 'unset-cpath))))) (synopsis "Finite element library (with MPI support)"))) =20 (define-public flann --=20 2.41.0 From unknown Sat Sep 20 07:11:54 2025 X-Loop: help-debbugs@gnu.org Subject: [bug#66516] [PATCH 1/2] gnu: Add kokkos. Resent-From: "Paul A. Patience" Original-Sender: "Debbugs-submit" Resent-CC: guix-patches@gnu.org Resent-Date: Fri, 13 Oct 2023 14:29:01 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 66516 X-GNU-PR-Package: guix-patches X-GNU-PR-Keywords: patch To: 66516@debbugs.gnu.org Received: via spool by 66516-submit@debbugs.gnu.org id=B66516.16972072956708 (code B ref 66516); Fri, 13 Oct 2023 14:29:01 +0000 Received: (at 66516) by debbugs.gnu.org; 13 Oct 2023 14:28:15 +0000 Received: from localhost ([127.0.0.1]:47045 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrJ9D-0001k8-CF for submit@debbugs.gnu.org; Fri, 13 Oct 2023 10:28:15 -0400 Received: from mail-40136.proton.ch ([185.70.40.136]:63541) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrJ9B-0001js-BF for 66516@debbugs.gnu.org; Fri, 13 Oct 2023 10:28:14 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1697207262; x=1697466462; bh=kbd4CcyhWJNro8whiJXkbP1dGx1HjTV61bTx3hk4afU=; h=Date:To:From:Subject:Message-ID:In-Reply-To:References: Feedback-ID:From:To:Cc:Date:Subject:Reply-To:Feedback-ID: Message-ID:BIMI-Selector; b=Kq6eHcfTcug4T3xcKYMJS5PHSLnCPU8kF6s6kiFjhUAHx9Zi1MeYfvLLK13vkc31k BJQELgYMRRcaM6i2DtqPoYRC1HjgluXGMDICInZ58Hga+Ve2f9facR7vtqtAg3+a5p OZgE3+zOHkb0yTSbC8bijae8AqVwrx4yf4q6OXdBizk1AEgYZKwag4JGYv+1EvN09R HJ1W/du9GpNZ0UsDoT0XeHIj8gIyCSI0avUSFgaIc0oTKq1ZwW7M09dj73g6zONl+h Mg01qpHZ552moPbZxQbDJ8HONEhb+s/X9RWkoFQSkNXMpllYXY7Losbtyof4SloJjI 6pLzzKb3fEE5g== Date: Fri, 13 Oct 2023 14:27:24 +0000 From: "Paul A. Patience" Message-ID: <87bkd2d2d7.fsf@apatience.com> In-Reply-To: References: Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: 0.0 (/) X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Hi, Come to think of it, I placed kokkos in gnu/packages/maths.scm only so that it would be right above trilinos-for-dealii-openmpi, because Trilinos includes a version of Kokkos. However, it seems that Kokkos is a project in its own right; perhaps it should go into gnu/packages/cpp.scm, near where I placed Taskflow in https://bugs.gnu.org/66521. If you think this is a good idea, feel free to make the change or request that I do so. Best regards, Paul From unknown Sat Sep 20 07:11:54 2025 MIME-Version: 1.0 X-Mailer: MIME-tools 5.505 (Entity 5.505) X-Loop: help-debbugs@gnu.org From: help-debbugs@gnu.org (GNU bug Tracking System) To: "Paul A. Patience" Subject: bug#66516: closed (Re: [bug#66516] [PATCH 0/2] gnu: dealii: Update to 9.5.1.) Message-ID: References: <875y399bwb.fsf@gnu.org> X-Gnu-PR-Message: they-closed 66516 X-Gnu-PR-Package: guix-patches X-Gnu-PR-Keywords: patch Reply-To: 66516@debbugs.gnu.org Date: Sat, 14 Oct 2023 20:41:02 +0000 Content-Type: multipart/mixed; boundary="----------=_1697316062-5723-1" This is a multi-part message in MIME format... ------------=_1697316062-5723-1 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Content-Type: text/plain; charset="utf-8" Your bug report #66516: [PATCH 0/2] gnu: dealii: Update to 9.5.1. which was filed against the guix-patches package, has been closed. The explanation is attached below, along with your original report. If you require more details, please reply to 66516@debbugs.gnu.org. --=20 66516: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=3D66516 GNU Bug Tracking System Contact help-debbugs@gnu.org with problems ------------=_1697316062-5723-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at 66516-done) by debbugs.gnu.org; 14 Oct 2023 20:40:05 +0000 Received: from localhost ([127.0.0.1]:50727 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrlQa-0001Sv-P8 for submit@debbugs.gnu.org; Sat, 14 Oct 2023 16:40:05 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]:58142) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrlQZ-0001SO-He for 66516-done@debbugs.gnu.org; Sat, 14 Oct 2023 16:40:03 -0400 Received: from fencepost.gnu.org ([2001:470:142:3::e]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrlQ6-0003z0-AA; Sat, 14 Oct 2023 16:39:34 -0400 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=gnu.org; s=fencepost-gnu-org; h=MIME-Version:Date:References:In-Reply-To:Subject:To: From; bh=f0d439nc+ag8dib0ANElvBlVqQKJa24GLqgL1zNntiQ=; b=Msn8YInTo7rq91/e/CJo uj7KXSzXtVkSiSMonD9OGtNoD/S2JUdcPm8svk21MCv6qdhH/s4UUbc4R/NUeI79f91TattDhk8Lm Ru7wC8qutinLkcUMLSQTYK7JzDfdI7NN0fi9jcu7rxUVvvLEDm9/4kVs/YBRod9XC5BLqd2Spfw1n /opVATjg06jl8D4buhwa+fRWHfAYftFD8KAC5E27SXwIgm4ieFF7ztAQaR6kFfAstCgbk3iWUp9bI juHYDMMWWQk0zpn7fWlKBQMrPt5/dX7Bx6stpaj0sI7inV17QG+iAxY5IoEdxvFdIcsQwQ+j8OEvF qaurcEYSbAqceg==; From: =?utf-8?Q?Ludovic_Court=C3=A8s?= To: "Paul A. Patience" Subject: Re: [bug#66516] [PATCH 0/2] gnu: dealii: Update to 9.5.1. In-Reply-To: (Paul A. Patience's message of "Fri, 13 Oct 2023 12:33:17 +0000") References: Date: Sat, 14 Oct 2023 22:39:32 +0200 Message-ID: <875y399bwb.fsf@gnu.org> User-Agent: Gnus/5.13 (Gnus v5.13) MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Spam-Score: -2.3 (--) X-Debbugs-Envelope-To: 66516-done Cc: 66516-done@debbugs.gnu.org X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -3.3 (---) "Paul A. Patience" skribis: > The prerequisite-patch-id refers to the Trilinos build fix [1], which is = not > strictly required (dealii-openmpi will just not build without it). > > Unfortunately, I am flummoxed by the unset-cpath phase's fixing the build= with > Kokkos. Yeah, #include_next is super sensitive to CPATH and duplicated entries therein, so I=E2=80=99m unfortunately not surprised. > gnu: Add kokkos. > gnu: dealii: Update to 9.5.1. Applied, and I moved Kokkos to cpp.scm as you suggested. Thanks! Ludo=E2=80=99. ------------=_1697316062-5723-1 Content-Type: message/rfc822 Content-Disposition: inline Content-Transfer-Encoding: 7bit Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 12:34:20 +0000 Received: from localhost ([127.0.0.1]:45418 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHMy-0003T6-6V for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:34:20 -0400 Received: from lists.gnu.org ([2001:470:142::17]:41374) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHMt-0003Sp-MH for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:34:19 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrHMP-0004cf-Gq for guix-patches@gnu.org; Fri, 13 Oct 2023 08:33:46 -0400 Received: from mail-4022.proton.ch ([185.70.40.22]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrHML-0005dy-3Q for guix-patches@gnu.org; Fri, 13 Oct 2023 08:33:44 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=apatience.com; s=protonmail2; t=1697200409; x=1697459609; bh=uIO/E8fpCE/HFCB7K5vsQmxmbHllankHor2RLQyvzs4=; h=Date:To:From:Cc:Subject:Message-ID:Feedback-ID:From:To:Cc:Date: Subject:Reply-To:Feedback-ID:Message-ID:BIMI-Selector; b=f6ARLaTohw0tNTGF4NvPig/NWlOvIQcuKVFZ8fsZalmQyl50ID6/INgi1aulB6Fvg E1Dk5A6xUcnzsNs50ghs0Gk2jlF48d6lGmOzOZyL83rJyt3MwuKWHxfyQyMnR02HsK 23lDh56grqghXCs4EDefc3phHH9qUrPQeGRCFWraoCNJcw6YYV7/BRs/4J7VDFPBca pc4hGvl3uclfoK27B7v4IdiuiL/qBgAfSI5uBxL0Q28kxebf8IoTUnYmB08bDnA3uR tJ0UPulevrGO/l2u8C0IVOKNJxsiVXXza5/oK8EUvTNH6OdpZluVpz2aP+o9Ts9p/H 9OHQrkRukQ0wA== Date: Fri, 13 Oct 2023 12:33:17 +0000 To: guix-patches@gnu.org From: "Paul A. Patience" Subject: [PATCH 0/2] gnu: dealii: Update to 9.5.1. Message-ID: Feedback-ID: 19227857:user:proton MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=185.70.40.22; envelope-from=paul@apatience.com; helo=mail-4022.proton.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 1.0 (+) X-Debbugs-Envelope-To: submit Cc: "Paul A. Patience" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.0 (/) Hi, The prerequisite-patch-id refers to the Trilinos build fix [1], which is no= t strictly required (dealii-openmpi will just not build without it). Unfortunately, I am flummoxed by the unset-cpath phase's fixing the build w= ith Kokkos. [1]: https://bugs.gnu.org/66462 Paul A. Patience (2): gnu: Add kokkos. gnu: dealii: Update to 9.5.1. gnu/packages/maths.scm | 79 +++++++++++++++++++++++++++++++++++++++--- 1 file changed, 74 insertions(+), 5 deletions(-) base-commit: f4e8baf3806e79d7111d2943859865ae4ee0b59d prerequisite-patch-id: 15b686dd7cb363b42432fb9bc83701cd33bed641 --=20 2.41.0 ------------=_1697316062-5723-1--