From debbugs-submit-bounces@debbugs.gnu.org Fri Oct 13 08:13:01 2023 Received: (at submit) by debbugs.gnu.org; 13 Oct 2023 12:13:01 +0000 Received: from localhost ([127.0.0.1]:45406 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrH2L-0002nt-3B for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:13:01 -0400 Received: from lists.gnu.org ([2001:470:142::17]:48728) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrH2I-0002nc-8A for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:12:59 -0400 Received: from eggs.gnu.org ([2001:470:142:3::10]) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrH1p-0004Ur-BE for guix-patches@gnu.org; Fri, 13 Oct 2023 08:12:29 -0400 Received: from a2062.mx.srv.dfn.de ([194.95.232.172]) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1qrH1m-0001rY-1N for guix-patches@gnu.org; Fri, 13 Oct 2023 08:12:28 -0400 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=mdc-berlin.de; h= content-type:content-type:content-transfer-encoding:mime-version :x-mailer:message-id:date:date:subject:subject:from:from :received; s=mdc; t=1697199141; x=1699013542; bh=vcBTx4xZ/WswnlX 9WL5lhuf17F/k6nv3NfP8H9cDsJU=; b=kLCWT4Qjyt+gEjUsUApxCv92HKpcnjM 6FJ0SI23Q+McCRsnhDbbx/Ez45Yrz458ybR3AP1xEa+0FL2aa61gP/BaAz9SaPQC l0hvbVjANqpPTiVGmvjeh3R5E43syuL/qwZpZguuc+tvXGpOWbCd5itDg79SeMfK bFUGAgeThA18= Received: from SW-IT-P-EX2.mdc-berlin.net (mgw2.mdc-berlin.de [141.80.113.60]) by a2062.mx.srv.dfn.de (Postfix) with ESMTPS id 1B93BA0196 for ; Fri, 13 Oct 2023 14:12:20 +0200 (CEST) Received: from localhost (141.80.218.27) by SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) with Microsoft SMTP Server (version=TLS1_2, cipher=TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384) id 15.1.2507.34; Fri, 13 Oct 2023 14:12:20 +0200 From: "Afkhami, Navid" To: Subject: [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38. Date: Fri, 13 Oct 2023 12:12:09 +0000 Message-ID: X-Mailer: git-send-email 2.34.1 MIME-Version: 1.0 Content-Transfer-Encoding: 8bit Content-Type: text/plain X-Originating-IP: [141.80.218.27] X-ClientProxiedBy: SW-IT-P-EX3.mdc-berlin.net (141.80.113.61) To SW-IT-P-EX2.mdc-berlin.net (141.80.113.60) X-TM-AS-Product-Ver: SMEX-14.0.0.3092-9.0.1002-27932.007 X-TM-AS-Result: No-10--4.671600-5.000000 X-TMASE-MatchedRID: 4r2MyAYFTnf/R1NSMc2qCU7nLUqYrlslFIuBIWrdOeOU8ftiyKjZreCG 89wh97wnRRa406V/YwyBUGewL2YXt8i5BCxh8k4DwLYk+NSxc5r4qCLIu0mtIKY5ZGw7wyeHycO hvTXTlouSkIUZyUQUJxJTjjs9yT6Yo8WMkQWv6iXBcIE78YqRWvcUt5lc1lLgKIzdZS3ou0UF36 ea5FyxC+ygX8edE2gpXXuGEpRg94xj5VCr5RGaUcwe+p/QhylHL1eiHcbQKQ9iLJrD/cAeenRTt qPPGQOVIfVF/V1oSvM1SFnvT3xtg/ZXoppoXJ2l3uIZI4JiTJYQPI4HwLeaEA== X-TM-AS-User-Approved-Sender: Yes X-TM-AS-User-Blocked-Sender: No X-TMASE-Result: 10--4.671600-5.000000 X-TMASE-Version: SMEX-14.0.0.3092-9.0.1002-27932.007 X-TM-SNTS-SMTP: 94F7269088FD871E1426994C7B16F093F1A72A5EF745381C91FA567F9E7F8D792000:F Received-SPF: pass client-ip=194.95.232.172; envelope-from=Navid.Afkhami@mdc-berlin.de; helo=a2062.mx.srv.dfn.de X-Spam_score_int: -43 X-Spam_score: -4.4 X-Spam_bar: ---- X-Spam_report: (-4.4 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_DNSWL_MED=-2.3, SPF_HELO_PASS=-0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-Spam-Score: 0.9 (/) X-Debbugs-Envelope-To: submit Cc: "Afkhami, Navid" X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -0.1 (/) * gnu/packages/bioconductor.scm (r-mafh5-gnomad-v3-1-2-grch38): New variable. --- gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++ 1 file changed, 30 insertions(+) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f6946b72c8..c3e65dda56 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1711,6 +1711,36 @@ (define-public r-italicsdata ;; Expanded from GPL (license (list license:gpl2+ license:gpl3+)))) +(define-public r-mafh5-gnomad-v3-1-2-grch38 + (package + (name "r-mafh5-gnomad-v3-1-2-grch38") + (version "3.15.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "MafH5.gnomAD.v3.1.2.GRCh38" version + 'annotation)) + (sha256 + (base32 "18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq")))) + (properties `((upstream-name . "MafH5.gnomAD.v3.1.2.GRCh38"))) + (build-system r-build-system) + (propagated-inputs (list r-bsgenome + r-genomeinfodb + r-genomicranges + r-genomicscores + r-hdf5array + r-iranges + r-rhdf5 + r-s4vectors)) + (home-page "https://bioconductor.org/packages/MafH5.gnomAD.v3.1.2.GRCh38") + (synopsis + "Minor allele frequency data from gnomAD version 3.1.2 for GRCh38") + (description + "This package is designed to store minor allele frequency data. +It retrieves this data from the Genome Aggregation Database +(@code{gnomAD} version 3.1.2) for the human genome version GRCh38.") + (license license:artistic2.0))) + (define-public r-macrophage (package (name "r-macrophage") base-commit: 844dd7dac76fa491a052df1d117a5d817cc8087c -- 2.34.1 From debbugs-submit-bounces@debbugs.gnu.org Fri Oct 13 08:50:39 2023 Received: (at 66515-done) by debbugs.gnu.org; 13 Oct 2023 12:50:39 +0000 Received: from localhost ([127.0.0.1]:45448 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHcl-00047c-8P for submit@debbugs.gnu.org; Fri, 13 Oct 2023 08:50:39 -0400 Received: from sender3-of-o59.zoho.com ([136.143.184.59]:21944) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1qrHci-00047O-5p for 66515-done@debbugs.gnu.org; Fri, 13 Oct 2023 08:50:37 -0400 ARC-Seal: i=1; a=rsa-sha256; t=1697201410; cv=none; d=zohomail.com; s=zohoarc; b=BFzqhxx0VcOLx3DQCgkQD5uQqi+Rh+DfID5ws3Lxv+spZrqvArLGxSgVug82CqpW2G8OVkdj6ZPNZ82f9qfUGocn4pham5/jXQGLEjqRsslRQpi5y42F/S6FPcpNMuZzJ60/y9pIM+Pvxovi1/wO34RvxfuGy9DCSR28c8R9je0= ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=zohomail.com; s=zohoarc; t=1697201410; h=Content-Type:Date:Date:From:From:MIME-Version:Message-ID:Subject:Subject:To:To:Message-Id:Reply-To:Cc; bh=v5aVX3dCrrj0ZhdlZVDtIklUS384XWoymy5o0XItQ00=; b=QaNygtYwb907mvXgOEvmLvrfWeNPuCK6ZZ5mU9bgCK/GmQ3xadnHO0Hx30SjlQeMLZuVz7cXRoB7zBECanYTIg6ir5xZ5JrbvC28wX4CM8rhacb6E+T2IyfoYeTZZzu7R3tr3JXc1Am4nIbhxPTArWv8im9/zflq0AR5AtNq29I= ARC-Authentication-Results: i=1; mx.zohomail.com; dkim=pass header.i=elephly.net; spf=pass smtp.mailfrom=rekado@elephly.net; dmarc=pass header.from= DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; t=1697201410; s=zoho; d=elephly.net; i=rekado@elephly.net; h=From:From:To:To:Subject:Subject:Date:Date:Message-ID:MIME-Version:Content-Type:Message-Id:Reply-To:Cc; bh=v5aVX3dCrrj0ZhdlZVDtIklUS384XWoymy5o0XItQ00=; b=DxlpnRewB7sDePgK4GkuVblUyl/yp9Ji8k3Nc7npoNHcB80EoS2xsGcl5ouQFUOZ vpZO0oVhHQ7kpHl5rS8N/xVKa4Ef7Z9yoxMo0Q/fx+Q5rkCm/fxoK+rRZ+V4ybK1gqF K2YLIJZwmy2VQoAAJVjwEq1waZQeWKZpiq1/703c= Received: from localhost (87-110-142-46.pool.kielnet.net [46.142.110.87]) by mx.zohomail.com with SMTPS id 1697201408628600.6644935899371; Fri, 13 Oct 2023 05:50:08 -0700 (PDT) User-agent: mu4e 1.10.7; emacs 29.1 From: Ricardo Wurmus To: 66515-done@debbugs.gnu.org Subject: [PATCH] gnu: Add r-mafh5-gnomad-v3-1-2-grch38. Date: Fri, 13 Oct 2023 14:49:42 +0200 Message-ID: <87bkd2lm9u.fsf@elephly.net> MIME-Version: 1.0 Content-Type: text/plain X-ZohoMailClient: External X-Spam-Score: 0.0 (/) X-Debbugs-Envelope-To: 66515-done X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: debbugs-submit-bounces@debbugs.gnu.org Sender: "Debbugs-submit" X-Spam-Score: -1.0 (-) Applied after moving to annotation section. Thank you! -- Ricardo From unknown Sat Jun 21 10:28:14 2025 Received: (at fakecontrol) by fakecontrolmessage; To: internal_control@debbugs.gnu.org From: Debbugs Internal Request Subject: Internal Control Message-Id: bug archived. Date: Sat, 11 Nov 2023 12:24:06 +0000 User-Agent: Fakemail v42.6.9 # This is a fake control message. # # The action: # bug archived. thanks # This fakemail brought to you by your local debbugs # administrator