GNU bug report logs - #66450
29.1; Debbugs/Gnus sometimes corrupt git formatted patches

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Package: emacs;

Reported by: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>

Date: Tue, 10 Oct 2023 18:31:02 UTC

Severity: normal

Found in version 29.1

Done: Eric Abrahamsen <eric <at> ericabrahamsen.net>

Bug is archived. No further changes may be made.

Full log

Message #5 received at submit <at> debbugs.gnu.org (full text, mbox):

From: Maxim Cournoyer <maxim.cournoyer <at> gmail.com>
To: bug-gnu-emacs <at> gnu.org
Subject: 29.1; Debbugs/Gnus sometimes corrupt git formatted patches
Date: Tue, 10 Oct 2023 14:29:28 -0400

Hello,

While working via Emacs Debbugs, I noticed that applying a patch would
fail, and that this only occurred when fetching and saving the patch via
Debbugs/Gnus.  Below is a reproducer:

1. mkdir -p src && cd src && git clone https://git.savannah.gnu.org/git/guix.git
2. cd guix && git checkout core-updates
3. in emacs: M-x debbugs-gnu-bugs RET 65479 RET
4. Navigate to the message with [PATCH core-updates v3 10/63] in its
subject
5. M-x cd RET ~/src/guix
6. Try to apply the patch by pressing: | RET git am
7. Notice that it fails with a patch corrupted message
8. Save the patch message to a file via: O f /tmp/bad.txt
9. Save a pristine version from Mumi:
wget https://issues.guix.gnu.org/issue/65479/raw/164 -O/tmp/good.txt

10. From your shell in the Guix checkout: git am --abort; git am <
/tmp/bad.txt
Observe:
--8<---------------cut here---------------start------------->8---
Applying: gnu: docbook: Remove leftovers.
error: corrupt patch at line 97
Patch failed at 0001 gnu: docbook: Remove leftovers.
hint: Use 'git am --show-current-patch=diff' to see the failed patch
When you have resolved this problem, run "git am --continue".
If you prefer to skip this patch, run "git am --skip" instead.
To restore the original branch and stop patching, run "git am --abort".
--8<---------------cut here---------------end--------------->8---

11. git am --abort; git am < /tmp/good.txt

It'll fail also because we haven't applied patches 1 to 9, but note the
error is not about a corrupted patch.

Ignoring the different mail fields changes,

--8<---------------cut here---------------start------------->8---
 [...]
 
 docbook-xsl patches are probably remnants from
 1f7d94597f1e78776f854eeca46c03a3aded8466.
@@ -157,6 +92,7 @@
 -      This module implements DTD-independent functions
 - 
 --     ******************************************************************** --><xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform" version="1.0">
+
 -+     ******************************************************************** -->
 -+<xsl:stylesheet xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
 -+                xmlns:str="http://exslt.org/strings"
@@ -175,6 +111,7 @@
 -     <xsl:when test="contains($string, $target)">
 -       <xsl:variable name="rest">
 -         <xsl:call-template name="string.subst">
+
 diff --git a/gnu/packages/patches/docbook-xsl-support-old-url.patch b/gnu/packages/patches/docbook-xsl-support-old-url.patch
 deleted file mode 100644
 index 5b7dda458f..0000000000
@@ -199,7 +136,11 @@
 -+  <rewriteSystem systemIdStartString="http://docbook.sourceforge.net/release/xsl/current/" rewritePrefix="./"/>
 - </catalog>
 -- 
+
 2.41.0
 
 
 
+
+
+
--8<---------------cut here---------------end--------------->8---

So it looks like something in Debbugs and/or Gnus is introducing
extraneous newlines to the message body, which corrupts the patch?

~~~

In GNU Emacs 29.1 (build 1, x86_64-pc-linux-gnu, GTK+ Version 3.24.37,
cairo version 1.16.0)
Windowing system distributor 'The X.Org Foundation', version 11.0.12101004
System Description: Guix System

Configured using:
 'configure
 CONFIG_SHELL=/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash
 SHELL=/gnu/store/rib9g2ig1xf3kclyl076w28parmncg4k-bash-minimal-5.1.16/bin/bash
 --prefix=/gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1
 --enable-fast-install --with-cairo --with-modules
 --with-native-compilation=aot --disable-build-details'

Configured features:
ACL CAIRO DBUS FREETYPE GIF GLIB GMP GNUTLS GPM GSETTINGS HARFBUZZ JPEG
JSON LCMS2 LIBOTF LIBSELINUX LIBSYSTEMD LIBXML2 M17N_FLT MODULES
NATIVE_COMP NOTIFY INOTIFY PDUMPER PNG RSVG SECCOMP SOUND SQLITE3
THREADS TIFF TOOLKIT_SCROLL_BARS TREE_SITTER X11 XDBE XIM XINPUT2 XPM
GTK3 ZLIB

Important settings:
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  value of $EMACSNATIVELOADPATH: /home/maxim/.guix-profile/lib/emacs/native-site-lisp
  value of $LANG: fr_FR.utf8
  value of $XMODIFIERS: @im=ibus
  locale-coding-system: utf-8-unix

Major mode: Lisp Interaction

Minor modes in effect:
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  yas-global-mode: t
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/gnu/store/3wdvamcmdjpcx2ghl0d3i8kii5266gpy-emacs-org-9.6.9/share/emacs/site-lisp/org-9.6.9/ob-eshell hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/org/ob-eshell
/gnu/store/3wdvamcmdjpcx2ghl0d3i8kii5266gpy-emacs-org-9.6.9/share/emacs/site-lisp/org-9.6.9/ob-emacs-lisp hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/org/ob-emacs-lisp
/gnu/store/3wdvamcmdjpcx2ghl0d3i8kii5266gpy-emacs-org-9.6.9/share/emacs/site-lisp/org-9.6.9/ob-dot hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/org/ob-dot
/gnu/store/3wdvamcmdjpcx2ghl0d3i8kii5266gpy-emacs-org-9.6.9/share/emacs/site-lisp/org-9.6.9/ob-ditaa hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/org/ob-ditaa
/gnu/store/3wdvamcmdjpcx2ghl0d3i8kii5266gpy-emacs-org-9.6.9/share/emacs/site-lisp/org-9.6.9/ob-css hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/org/ob-css
/gnu/store/3wdvamcmdjpcx2ghl0d3i8kii5266gpy-emacs-org-9.6.9/share/emacs/site-lisp/org-9.6.9/ob-calc hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/org/ob-calc
/gnu/store/3wdvamcmdjpcx2ghl0d3i8kii5266gpy-emacs-org-9.6.9/share/emacs/site-lisp/org-9.6.9/ob-awk hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/org/ob-awk
/gnu/store/pgshdvjd1d05x4rs0bs7wg1rxh39qzac-emacs-soap-client-3.2.3/share/emacs/site-lisp/soap-client-3.2.3/soap-inspect hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/net/soap-inspect
/gnu/store/pgshdvjd1d05x4rs0bs7wg1rxh39qzac-emacs-soap-client-3.2.3/share/emacs/site-lisp/soap-client-3.2.3/soap-client hides /gnu/store/3bsdryx1ykzj1g1av7njc310vy61qrzw-emacs-29.1/share/emacs/29.1/lisp/net/soap-client

Features:
(shadow mail-extr emacsbug message yank-media rfc822 mml mml-sec
gnus-util mailabbrev gmm-utils mailheader sendmail mail-utils comp
comp-cstr server diff-hl log-view pcvs-util vc-dir ewoc vc vc-dispatcher
flyspell ispell company-oddmuse company-keywords company-etags
company-gtags company-dabbrev-code company-dabbrev company-files
company-cmake company-xcode company-clang company-semantic company-eclim
company-template company-bbdb htmlize ox-reveal ox-odt rng-loc rng-uri
rng-parse rng-match rng-pttrn nxml-parse nxml-ns nxml-enc xmltok
nxml-util ox-latex ox-icalendar org-agenda ox-html table ox-ascii
ox-publish ox org-element org-persist org-id org-refile avl-tree tramp
tramp-loaddefs trampver tramp-integration tramp-compat shell parse-time
iso8601 dired-x w3m doc-view filenotify jka-compr image-mode exif
timezone w3m-hist w3m-fb bookmark-w3m w3m-ems w3m-favicon w3m-image
tab-line w3m-proc w3m-util highlight-indentation flymake-proc flymake
company-capf help-fns radix-tree elpy elpy-rpc pyvenv eshell esh-cmd
esh-ext esh-opt esh-proc esh-io esh-arg esh-module esh-groups esh-util
elpy-shell elpy-profile elpy-django s elpy-refactor diff-mode python
compat treesit ido hideshow files-x etags fileloop generator cus-edit pp
yasnippet-snippets yasnippet paredit ffap debbugs-gnu add-log
debbugs-compat emms-mpris dbus emms-librefm-stream
emms-librefm-scrobbler emms-playlist-limit emms-i18n emms-history
emms-score emms-stream-info emms-metaplaylist-mode emms-bookmarks
emms-cue emms-mode-line-icon emms-browser sort emms-volume
emms-volume-sndioctl emms-volume-mixerctl emms-volume-pulse
emms-volume-amixer emms-playlist-sort emms-last-played emms-player-xine
emms-player-mpd tq emms-lyrics emms-url emms-streams emms-show-all
emms-tag-editor emms-tag-tracktag emms-mode-line emms-cache
emms-info-native bindat emms-info-exiftool emms-info-tinytag
emms-info-opusinfo emms-info-ogginfo emms-info-mp3info emms-player-vlc
emms-player-mpv emms-playing-time emms-player-mplayer emms-player-simple
emms-playlist-mode emms-source-playlist emms-source-file thingatpt
locate emms-mark emms-setup emms-info-metaflac emms-info emms-later-do
emms emms-compat cal-china lunar solar cal-dst cal-bahai cal-islam
cal-hebrew holidays holiday-loaddefs appt diary-lib diary-loaddefs
string-inflection org-clock org-tempo org ob ob-tangle ob-ref ob-lob
ob-table ob-exp org-macro org-src ob-comint org-pcomplete pcomplete
org-list org-footnote org-faces org-entities time-date noutline outline
ob-emacs-lisp ob-core ob-eval org-cycle org-table ol org-fold
org-fold-core org-keys oc org-loaddefs find-func cal-menu calendar
cal-loaddefs org-compat tempo org-version org-macs format-spec ws-butler
epa derived epg rfc6068 epg-config grep-a-lot grep advice counsel xdg
xref project dired dired-loaddefs compile text-property-search comint
ansi-osc ansi-color swiper cl-extra help-mode ivy delsel ivy-faces
ivy-overlay colir color easy-mmode so-long recentf tree-widget wid-edit
company edmacro kmacro pcase debbugs-browse debbugs soap-client
mm-decode mm-bodies mm-encode url-http url-auth mail-parse rfc2231
rfc2047 rfc2045 mm-util ietf-drums mail-prsvr url-gw nsm puny warnings
icons rng-xsd rng-dt rng-util xsd-regexp xml bug-reference elec-pair
savehist winner ring time cus-load feature-mode-autoloads
clang-rename-autoloads clang-format-autoloads markup-faces-autoloads
adoc-mode-autoloads yasnippet-snippets-autoloads yaml-mode-autoloads
ws-butler-autoloads w3m-load string-inflection-autoloads
strace-mode-autoloads sr-speedbar-autoloads rust-mode-autoloads
rpm-spec-mode-autoloads robot-log-autoloads robot-mode-autoloads
loc-changes-autoloads load-relative-autoloads realgud-autoloads
realgud-recursive-autoloads qml-mode-autoloads tablist-autoloads
pdf-tools-autoloads epl-autoloads pkg-info-autoloads
projectile-autoloads php-mode-autoloads paredit-autoloads
org-reveal-autoloads org-autoloads mmm-mode-autoloads
json-snatcher-autoloads json-mode-autoloads nix-mode-autoloads
markdown-mode-autoloads async-autoloads with-editor-autoloads
transient-autoloads compat-autoloads magit-autoloads
jenkinsfile-mode-autoloads htmlize-autoloads magit-popup-autoloads
edit-indirect-autoloads bui-autoloads guix-autoloads rx
groovy-modes-autoloads grep-a-lot-autoloads go-mode-autoloads
xpm-autoloads ascii-art-to-unicode-autoloads gnugo-autoloads
ggtags-autoloads geiser-guile-autoloads geiser-autoloads dash-autoloads
flycheck-autoloads flycheck-guile-autoloads emms-autoloads s-autoloads
pyvenv-autoloads yasnippet-autoloads highlight-indentation-autoloads
find-file-in-project-autoloads elpy-autoloads el-mock-autoloads
dts-mode-autoloads diff-hl-autoloads soap-client-autoloads
debbugs-autoloads csv-mode-autoloads counsel-bbdb-autoloads
hydra-autoloads ivy-autoloads swiper-autoloads counsel-autoloads
pos-tip-autoloads company-quickhelp-autoloads company-autoloads
cmake-mode-autoloads bbdb-autoloads bash-completion-autoloads
auctex-autoloads tex-site guix-emacs package browse-url url url-proxy
url-privacy url-expand url-methods url-history url-cookie
generate-lisp-file url-domsuf url-util mailcap url-handlers url-parse
auth-source cl-seq eieio eieio-core cl-macs password-cache json subr-x
map byte-opt gv bytecomp byte-compile url-vars cl-loaddefs cl-lib rmc
iso-transl tooltip cconv eldoc paren electric uniquify ediff-hook
vc-hooks lisp-float-type elisp-mode mwheel term/x-win x-win
term/common-win x-dnd tool-bar dnd fontset image regexp-opt fringe
tabulated-list replace newcomment text-mode lisp-mode prog-mode register
page tab-bar menu-bar rfn-eshadow isearch easymenu timer select
scroll-bar mouse jit-lock font-lock syntax font-core term/tty-colors
frame minibuffer nadvice seq simple cl-generic indonesian philippine
cham georgian utf-8-lang misc-lang vietnamese tibetan thai tai-viet lao
korean japanese eucjp-ms cp51932 hebrew greek romanian slovak czech
european ethiopic indian cyrillic chinese composite emoji-zwj charscript
charprop case-table epa-hook jka-cmpr-hook help abbrev obarray oclosure
cl-preloaded button loaddefs theme-loaddefs faces cus-face macroexp
files window text-properties overlay sha1 md5 base64 format env
code-pages mule custom widget keymap hashtable-print-readable backquote
threads dbusbind inotify lcms2 dynamic-setting system-font-setting
font-render-setting cairo move-toolbar gtk x-toolkit xinput2 x multi-tty
make-network-process native-compile emacs)

Memory information:
((conses 16 1149718 35168)
 (symbols 48 36454 2)
 (strings 32 312711 14091)
 (string-bytes 1 8502774)
 (vectors 16 72200)
 (vector-slots 8 2100122 82529)
 (floats 8 849 313)
 (intervals 56 32577 1956)
 (buffers 984 18))

-- 
Thanks,
Maxim
This bug report was last modified 1 year and 71 days ago.

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Copyright (C) 1999 Darren O. Benham, 1997,2003 nCipher Corporation Ltd, 1994-97 Ian Jackson.