GNU bug report logs - #66118
[PATCH] gnu: Add r-omixerrpm.

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From: help-debbugs <at> gnu.org (GNU bug Tracking System)
To: "Navid.Afkhami <at> mdc-berlin.de" <Navid.Afkhami <at> mdc-berlin.de>
Cc: tracker <at> debbugs.gnu.org
Subject: bug#66118: closed ([PATCH] gnu: Add r-omixerrpm.)
Date: Wed, 20 Sep 2023 12:35:02 +0000

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Your message dated Wed, 20 Sep 2023 12:31:45 +0000
with message-id <fa85906ccea44841a10b4b92d85aaf18 <at> mdc-berlin.de>
and subject line Can not be added to Guix - The package contains a non-free binary
has caused the debbugs.gnu.org bug report #66118,
regarding [PATCH] gnu: Add r-omixerrpm.
to be marked as done.

(If you believe you have received this mail in error, please contact
help-debbugs <at> gnu.org.)


-- 
66118: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=66118
GNU Bug Tracking System
Contact help-debbugs <at> gnu.org with problems

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From: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
To: <guix-patches <at> gnu.org>
Cc: Navid Afkhami <navid.afkhami <at> mdc-berlin.de>
Subject: [PATCH] gnu: Add r-omixerrpm.
Date: Wed, 20 Sep 2023 10:39:12 +0000

* gnu/packages/bioinformatics.scm (r-omixerrpm): New variable.
---
 gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6acf37b312..d4da92b6b6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15065,6 +15065,29 @@ (define-public r-dyngen
 dynamic cellular processes at single-cell resolution.")
     (license license:expat)))
 
+(define-public r-omixerrpm
+  (let ((commit "184f1cc99aefed722e20eb00eda082348a064c4e")
+        (revision "1"))
+    (package
+      (name "r-omixerrpm")
+      (version (git-version "0.3.3" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/omixer/omixer-rpmR")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "10ipasg8zi4ln13a5zj2l4a35hd3sfy3p6gir0sw0vf3cbc11lnz"))))
+      (properties `((upstream-name . "omixerRpm")))
+      (build-system r-build-system)
+      (home-page "https://github.com/omixer/omixer-rpmR")
+      (synopsis "Metabolic module profiling of microbiome samples")
+      (description
+       "An R interface for microbiome metabolic module profiling with omixer-rpm.")
+      (license license:gpl3))))
+
 ;; Needed for r-liana
 (define-public r-omnipathr/devel
   (let ((commit "679bb79e319af246a16968d27d64d8d6937a331a")

base-commit: 6bd17a0806ad32d1493ac51a7443276f719c4224
-- 
2.34.1

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From: "Navid.Afkhami <at> mdc-berlin.de" <Navid.Afkhami <at> mdc-berlin.de>
To: "'66118-done <at> debbugs.gnu.org'" <66118-done <at> debbugs.gnu.org>
Subject: Can not be added to Guix - The package contains a non-free binary
Date: Wed, 20 Sep 2023 12:31:45 +0000

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Hello,

 

This package cannot be added to Guix because it contains a non-free binary.
Therefore, please close the report.

 

Thank you,

Navid

 

- -  

Navid Afkhami

IT Administration

Max Delbrück Center for Molecular Medicine (MDC)

Berlin Institute for Medical Systems Biology (BIMSB)

Hannoversche Str. 28, 10115 Berlin

Phone: +49 30 9406 1316

Email:    <mailto:navid.afkhami <at> mdc-berlin.de> navid.afkhami <at> mdc-berlin.de

 

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